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EBI Dbfetch

ID   KF458656; SV 1; linear; genomic DNA; STD; HUM; 386 BP.
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AC   KF458656;
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DT   30-JUL-2013 (Rel. 117, Created)
DT   18-SEP-2013 (Rel. 118, Last updated, Version 2)
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DE   Homo sapiens chromosome 8 WGS contig WGS_RP11_AC019257.3_125306 genomic
DE   sequence.
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KW   ASSEMBLY_CORRECTION.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-386
RG   Genome Reference Consortium
RA   ;
RT   ;
RL   Submitted (16-SEP-2013) to the INSDC.
RL   NCBI, NIH, Bethesda, MD 20892, USA
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DR   MD5; 83129815f75fed22563ad37f13611a92.
DR   ENA-CON; GL000062.
DR   ENA-CON; KI270821.
DR   Ensembl-Gn; ENSG00000104728; homo_sapiens.
DR   Ensembl-Scaffolds; KF458656.1:1-386; homo_sapiens.
DR   Ensembl-Tr; ENST00000398560; homo_sapiens.
DR   Ensembl-Tr; ENST00000522435; homo_sapiens.
DR   GOA; E9PB39.
DR   GOA; H0YAN8.
DR   HGNC; HGNC:14103; ARHGEF10.
DR   InterPro; IPR000219; DH-domain.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom.
DR   InterPro; IPR017986; WD40_repeat_dom.
DR   InterPro; IPR030632; ARHGEF10.
DR   UniProtKB/TrEMBL; E9PB39; E9PB39_HUMAN.
DR   UniProtKB/TrEMBL; H0YAN8; H0YAN8_HUMAN.
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CC   This sequence was generated to audit a questionable region in the
CC   reference genome sequence. This sequence was assembled from
CC   Illumina reads representing the individual whose DNA was also the
CC   source of the RP11 BAC library (BioProject Accession: PRJNA189425;
CC   SRA run accession: SRR834589). Assembly was performed with
CC   cortex_con (http://cortexassembler.sourceforge.net/).
CC   ##Metadata-START##
CC   BioSample        :: SAMN01921690
CC   Target           :: AC019257.3
CC   Target Base      :: 125306
CC   Average Coverage :: 50.06x
CC   Minimum Coverage :: 5x
CC   Maximum Coverage :: 94x
CC   ##Metadata-END##
CC   ##Assembly-Data-START##
CC   Assembly Method       :: cortex_con Beta 0.04c, April 2011
CC   Sequencing Technology :: Illumina MiSeq
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..386
FT                   /organism="Homo sapiens"
FT                   /chromosome="8"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone="WGS_RP11_AC019257.3_125306"
FT                   /db_xref="taxon:9606"
FT                   /bio_material="SRR834589"
FT   misc_feature    196
FT                   /note="Region: Target update"
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SQ   Sequence 386 BP; 128 A; 54 C; 71 G; 133 T; 0 other;
     acactctccc aaggctcctg agtcacagtt gtgggggtca aacataaaaa tgtatttgtg        60
     tatatataca tgtaatatat ataatatgtt atatattata ctatatatat tattgatatg       120
     tgtacctata ttatgtatat gtattattta tatgtgtata tatattatgt atgtatattt       180
     tttaaagtcc tgagatgata ctaatatagt atcaggtcaa aagatctgga ataggtataa       240
     tattaaaata caaaaacaaa accaatattc tgggtttcat ggctactgca cgtgatgtca       300
     gtctttctgg cagctcaatc tgacacgtca aattatatgc ccactaaggg gtgggacagg       360
     gagcctccag tgctcaggaa gagtgt                                            386
//


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