Dbfetch
ID KF458282; SV 1; linear; genomic DNA; STD; HUM; 271 BP. XX AC KF458282; XX DT 30-JUL-2013 (Rel. 117, Created) DT 30-JUL-2013 (Rel. 117, Last updated, Version 1) XX DE Homo sapiens chromosome 6 WGS contig WGS_CEU_AL035594.7_83990 genomic DE sequence. XX KW ASSEMBLY_CORRECTION. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-271 RG Genome Reference Consortium RA ; RT ; RL Submitted (26-JUL-2013) to the INSDC. RL NCBI, NIH, Bethesda, MD 20892, USA XX DR MD5; 127065370c211bc774fae274e8ec1c17. DR ENA-CON; GL000054. DR ENA-CON; KI270801. DR Ensembl-Gn; ENSG00000152894; homo_sapiens. DR Ensembl-Gn; ENSG00000273993; homo_sapiens. DR Ensembl-Scaffolds; KF458282.1:1-271; homo_sapiens. DR Ensembl-Tr; ENST00000368207; homo_sapiens. DR Ensembl-Tr; ENST00000368210; homo_sapiens. DR Ensembl-Tr; ENST00000392449; homo_sapiens. DR Ensembl-Tr; ENST00000415055; homo_sapiens. DR Ensembl-Tr; ENST00000525459; homo_sapiens. DR Ensembl-Tr; ENST00000531050; homo_sapiens. DR Ensembl-Tr; ENST00000532751; homo_sapiens. DR Ensembl-Tr; ENST00000621720; homo_sapiens. DR Ensembl-Tr; ENST00000625418; homo_sapiens. DR Ensembl-Tr; ENST00000625760; homo_sapiens. DR Ensembl-Tr; ENST00000626594; homo_sapiens. DR Ensembl-Tr; ENST00000627768; homo_sapiens. DR Ensembl-Tr; ENST00000628245; homo_sapiens. DR Ensembl-Tr; ENST00000628472; homo_sapiens. DR GOA; A0A0G2JQF6. DR GOA; E9PGC5. DR GOA; E9PRW2. DR GOA; H0Y6P5. DR GOA; H0Y6V4. DR GOA; H0YDP9. DR GOA; Q5TG12. DR HGNC; HGNC:9674; PTPRK. DR InterPro; IPR000242; PTPase_domain. DR InterPro; IPR000387; TYR_PHOSPHATASE_dom. DR InterPro; IPR000998; MAM_dom. DR InterPro; IPR003595; Tyr_Pase_cat. DR InterPro; IPR003599; Ig_sub. DR InterPro; IPR003961; FN3_dom. DR InterPro; IPR007110; Ig-like_dom. DR InterPro; IPR013098; Ig_I-set. DR InterPro; IPR013320; ConA-like_dom_sf. DR InterPro; IPR013783; Ig-like_fold. DR InterPro; IPR016130; Tyr_Pase_AS. DR InterPro; IPR029021; Prot-tyrosine_phosphatase-like. DR InterPro; IPR036116; FN3_sf. DR InterPro; IPR036179; Ig-like_dom_sf. DR UniProtKB/TrEMBL; A0A0G2JQF6; A0A0G2JQF6_HUMAN. DR UniProtKB/TrEMBL; E9PGC5; E9PGC5_HUMAN. DR UniProtKB/TrEMBL; E9PMV4; E9PMV4_HUMAN. DR UniProtKB/TrEMBL; E9PRW2; E9PRW2_HUMAN. DR UniProtKB/TrEMBL; H0Y6P5; H0Y6P5_HUMAN. DR UniProtKB/TrEMBL; H0Y6V4; H0Y6V4_HUMAN. DR UniProtKB/TrEMBL; H0YD44; H0YD44_HUMAN. DR UniProtKB/TrEMBL; H0YDP9; H0YDP9_HUMAN. DR UniProtKB/TrEMBL; Q5TG12; Q5TG12_HUMAN. DR UniProtKB/TrEMBL; Q6P493; Q6P493_HUMAN. XX CC This sequence was generated to audit a questionable region in the CC reference genome sequence. This sequence was assembled from a CC random sampling of Illumina and LS454 reads representing a single CC population of the 1000 Genomes Project CC (http://www.1000genomes.org/), using cortex_con CC (http://cortexassembler.sourceforge.net/). CC ##Metadata-START## CC 1000 Genomes Population :: CEU CC Target :: AL035594.7 CC Target Base :: 83978 CC Average Coverage :: 13.95x CC Minimum Coverage :: 4x CC Maximum Coverage :: 22x CC ##Metadata-END## CC ##Assembly-Data-START## CC Assembly Method :: cortex_con Beta 0.04c, April 2011 CC Sequencing Technology :: Illumina GAIIx; 454 CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..271 FT /organism="Homo sapiens" FT /chromosome="6" FT /mol_type="genomic DNA" FT /pop_variant="CEU" FT /clone="WGS_CEU_AL035594.7_83990" FT /db_xref="taxon:9606" FT /bio_material="NA12891" FT misc_feature 130 FT /note="Region: Target update" XX SQ Sequence 271 BP; 85 A; 40 C; 35 G; 111 T; 0 other; ttttaatttc tttccttatt tataaaatga gactgttctg aagattaaca gcaaaaaaaa 60 gataaagtat attaaatgcc ttgtttaata ccaggcatat agtcagaatt caataagtgt 120 tatctgatgt tgtttcctgc attgcttttc ctattacacc cttagttttt ggcttatagt 180 tatcctctat ttttaaaatc aatcttcaga tatttttcaa tgattaagag tttcattcag 240 tatgttgctt ttacactgat aaacatacag g 271 //