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EBI Dbfetch

ID   KF455178; SV 1; linear; genomic DNA; STD; HUM; 390 BP.
XX
AC   KF455178;
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DT   30-JUL-2013 (Rel. 117, Created)
DT   18-SEP-2013 (Rel. 118, Last updated, Version 2)
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DE   Homo sapiens chromosome 1 WGS contig WGS_RP11_AC092782.2_140658 genomic
DE   sequence.
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KW   ASSEMBLY_CORRECTION.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-390
RG   Genome Reference Consortium
RA   ;
RT   ;
RL   Submitted (16-SEP-2013) to the INSDC.
RL   NCBI, NIH, Bethesda, MD 20892, USA
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DR   MD5; 7f70a727ce64777f5bce6b7eeaa9301a.
DR   ENA-CON; KI270763.
DR   ENA-CON; GL000018.
DR   Ensembl-Gn; ENSG00000143702; homo_sapiens.
DR   Ensembl-Gn; ENSG00000276725; homo_sapiens.
DR   Ensembl-Scaffolds; KF455178.1:1-390; homo_sapiens.
DR   Ensembl-Tr; ENST00000336415; homo_sapiens.
DR   Ensembl-Tr; ENST00000366542; homo_sapiens.
DR   Ensembl-Tr; ENST00000366543; homo_sapiens.
DR   Ensembl-Tr; ENST00000366544; homo_sapiens.
DR   Ensembl-Tr; ENST00000413359; homo_sapiens.
DR   Ensembl-Tr; ENST00000450306; homo_sapiens.
DR   Ensembl-Tr; ENST00000464936; homo_sapiens.
DR   Ensembl-Tr; ENST00000481987; homo_sapiens.
DR   Ensembl-Tr; ENST00000490813; homo_sapiens.
DR   Ensembl-Tr; ENST00000492145; homo_sapiens.
DR   Ensembl-Tr; ENST00000522191; homo_sapiens.
DR   Ensembl-Tr; ENST00000522995; homo_sapiens.
DR   Ensembl-Tr; ENST00000523424; homo_sapiens.
DR   Ensembl-Tr; ENST00000612450; homo_sapiens.
DR   Ensembl-Tr; ENST00000619357; homo_sapiens.
DR   Ensembl-Tr; ENST00000621831; homo_sapiens.
DR   GOA; E5RG47.
DR   GOA; E7EMW0.
DR   GOA; E7EWM2.
DR   GOA; H0Y4T4.
DR   HGNC; HGNC:28920; CEP170.
DR   InterPro; IPR000253; FHA_dom.
DR   InterPro; IPR008984; SMAD_FHA_domain.
DR   InterPro; IPR026644; CEP170.
DR   InterPro; IPR029300; CEP170_C.
DR   UniProtKB/TrEMBL; E5RFU8; E5RFU8_HUMAN.
DR   UniProtKB/TrEMBL; E5RG47; E5RG47_HUMAN.
DR   UniProtKB/TrEMBL; E5RGW7; E5RGW7_HUMAN.
DR   UniProtKB/TrEMBL; E5RIH6; E5RIH6_HUMAN.
DR   UniProtKB/TrEMBL; E5RJT5; E5RJT5_HUMAN.
DR   UniProtKB/TrEMBL; E7EMW0; E7EMW0_HUMAN.
DR   UniProtKB/TrEMBL; E7EWM2; E7EWM2_HUMAN.
DR   UniProtKB/TrEMBL; H0Y2V6; H0Y2V6_HUMAN.
DR   UniProtKB/TrEMBL; H0Y4T4; H0Y4T4_HUMAN.
DR   UniProtKB/TrEMBL; H0YB66; H0YB66_HUMAN.
DR   UniProtKB/TrEMBL; H0YB92; H0YB92_HUMAN.
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CC   This sequence was generated to audit a questionable region in the
CC   reference genome sequence. This sequence was assembled from
CC   Illumina reads representing the individual whose DNA was also the
CC   source of the RP11 BAC library (BioProject Accession: PRJNA189425;
CC   SRA run accession: SRR834589). Assembly was performed with
CC   cortex_con (http://cortexassembler.sourceforge.net/).
CC   ##Metadata-START##
CC   BioSample        :: SAMN01921690
CC   Target           :: AC092782.2
CC   Target Base      :: 140658
CC   Average Coverage :: 78.34x
CC   Minimum Coverage :: 7x
CC   Maximum Coverage :: 122x
CC   ##Metadata-END##
CC   ##Assembly-Data-START##
CC   Assembly Method       :: cortex_con Beta 0.04c, April 2011
CC   Sequencing Technology :: Illumina MiSeq
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..390
FT                   /organism="Homo sapiens"
FT                   /chromosome="1"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone="WGS_RP11_AC092782.2_140658"
FT                   /db_xref="taxon:9606"
FT                   /bio_material="SRR834589"
FT   misc_feature    198
FT                   /note="Region: Target update"
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SQ   Sequence 390 BP; 153 A; 67 C; 54 G; 116 T; 0 other;
     ggtttccaga ccaatttttc agaaaacaaa ttaagaatca acataaggct gccaactttt        60
     tattggttaa tcaggaacac taaaataaaa caaaacccca tgaccaacat caaaagaaac       120
     ttaacctatc attacttaat aggtgttact aacactatca tttaataaag gccatttatg       180
     aacattagaa aaggagaaca aaatctcaaa aaatagtacc ttgaattaca taaatataac       240
     ttgaaaagcc atgtaacatt tctctctctc tctctgcttt ttgctttgaa ttagcagaga       300
     tgactgttgt taaagagttg atacaatttt agactttaaa cacaagtgta tggcttgaaa       360
     taaggaaagg gacaatttca ctgcactttg                                        390
//


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