spacer

EBI Dbfetch

ID   FO704800; SV 1; linear; genomic DNA; HTG; HUM; 10387 BP.
XX
AC   FO704800;
XX
DT   12-JAN-2014 (Rel. 119, Created)
DT   12-JAN-2014 (Rel. 119, Last updated, Version 1)
XX
DE   Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH17-338F14
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KW   HTG; HTGS_DRAFT; HTGS_FULLTOP; HTGS_PHASE1.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-10387
RG   Genome Reference Consortium
RA   Rance R.;
RT   ;
RL   Submitted (03-JAN-2014) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: grc-help@sanger.ac.uk Clone requests: Geneservice
RL   (http://www.geneservice.co.uk/) and BACPAC Resources
RL   (http://bacpac.chori.org/)
XX
DR   MD5; 74e5bb1908defd451cce290818d3b3a7.
XX
CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: grc-help@sanger.ac.uk
CC   -------------- Project Information
CC   Center project name: bMO338F14
CC   -------------- Summary Statistics
CC   Assembly program: XGAP4; version 4.5
CC   Chemistry: Dye-terminator; 100% of reads
CC   Consensus quality: 9547 bases at least Q40
CC   Consensus quality: 9947 bases at least Q30
CC   Consensus quality: 10078 bases at least Q20
CC   Insert size: 10187; sum-of-contigs
CC   Insert size: 13094; agarose-fp
CC   Quality coverage: 12.96x in Q20 bases; sum-of-contigs
CC   Quality coverage: 13.53x in Q20 bases; agarose-fp
CC   --------------
CC   * NOTE: This is a 'working draft' sequence. It currently
CC   * consists of 3 contigs. The true order of the pieces is
CC   * not known and their order in this sequence record is
CC   * arbitrary.  Where the contigs adjacent to the vector can
CC   * be identified, they are labelled with 'clone_end' in the
CC   * feature table.  Some order and orientation information
CC   * can tentatively be deduced from paired sequencing reads
CC   * which have been identified to span the gap between two
CC   * contigs.  These are labelled as part of the same
CC   * 'fragment_chain', and the order and relative orientation
CC   * of the pieces within a fragment_chain is reflected in
CC   * this file.  Gaps between the contigs are represented as
CC   * runs of N, but the exact sizes of the gaps are unknown.
CC   * This record will be updated with the finished sequence as
CC   * soon as it is available and the accession number will be
CC   * preserved.
CC   *        1     3769 contig   3769 bp long; fragment_chain 1
CC   *     3870     6774 contig   2905 bp long; fragment_chain 1
CC   *     6875    10387 contig   3513 bp long
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..10387
FT                   /organism="Homo sapiens"
FT                   /chromosome="11"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-17"
FT                   /clone="CH17-338F14"
FT                   /db_xref="taxon:9606"
FT   misc_feature    1..3769
FT                   /note="assembly_fragment:00026"
FT                   /note="fragment_chain:1"
FT   misc_feature    3870..6774
FT                   /note="assembly_fragment:00013"
FT                   /note="fragment_chain:1"
FT   misc_feature    6875..10387
FT                   /note="assembly_fragment:00066.0"
XX
SQ   Sequence 10387 BP; 2767 A; 2605 C; 2039 G; 2776 T; 200 other;
     actaagccca tgcagactct aaaggttgta gagtctggtc gctatctgtc ctcaatgaga        60
     cccaggccca atgcagactc taaaggttgc acagtctgct ctatatctgt cctcaatgag       120
     acctaggacc agtgcggact ctaatggttg cctagtgtgc tctctatctg tcctcaatga       180
     gacctaggcc caatgcagac tccaaaggtt gcacagtccg gtctctatct gtcctcaatg       240
     agacctaggc ccaatgccga ctctaaagtt tgcacagtgt gctctctatc tgctctgaat       300
     gagacctagg cccaatgcag attctaaagg ttgcacagtc tgctctctaa ctgccctcaa       360
     tgacacctag gcccaatgca gactctaaac gttgcatagt ctggtctcta tctgccctca       420
     atgagaccta ggcccaatgc agactctaaa gtttgcacag tctgctctct atctgtcctc       480
     aatgagacct aggccaagtg cagactctaa agcttgcaca gtctgctctc tatctgacct       540
     caatgagacc taggcccaat gcagactatg aaggttctac agtctgctct ctatctgtcc       600
     tcaatgagac cgagtcccaa tgccgactct aaaggttgca cactctggtc tctttttgtc       660
     ctcaatgaga cgtaggccaa atgcagactc taaagtttgc acagtctgct ctctaactgt       720
     cctcaatgag acataggccc aatgcagact ctaaaggttg catagtctgc tctctatctg       780
     ccctcaatga gacctaggac cagtgaagac tctaaaggtt gcgcagtctg ctctctatct       840
     gtcctcaatg agacctaggc ccagtgcaga ctataaaggt tgcacagtct ggtctctatc       900
     tgtcctcaat gagacctagg cccaatgcag actctaaagg ttgcacagtc tgcactctat       960
     ctgtcctcaa tgagacctag gccaagtgca gactctaaag cttgcacagt ctgctctcta      1020
     tctgacctca atgagaccta ggcccaatgc agactataaa ggttctacag tctgctctct      1080
     atctgtcctc aatgagacct aggcccaatg cagactctaa aggttgcaca ctctggtctc      1140
     tatctgtcct caatgagacc taggcccagt gcagaccgta aagtttgcat agtctgcttt      1200
     ctatctgtcc tcaatgagac ctaggtccaa tgcagactct aaaggttgca cagtctgctc      1260
     tctatctgtc ctcgatgaga cctaggccta gtgcagactc taaaggttgc acagtctgct      1320
     ctctatctgc cctcaatgag acctaggccc aatgcagact ctaaaggttg cacagtctgc      1380
     tctctatctg tcctcaatga gacctaggcc caatgcagac tctaaaggtt gcacagtctg      1440
     ccctctatct gtcctcaatg agacctaggc ccaatgcaga ctctaaagtt tgcacagtct      1500
     ggtctctatc tgtcctcaat gagacctagg cccaatgccg actctagagt ttgcacagtg      1560
     tgctctctat ctgctctcaa tgagacctag gcccaatgca gactctaaag tttgcacagt      1620
     ctgctctcta actgccctca atgagaccta ggcccaatgc agactctaaa ggttgcacag      1680
     tctgttctct atctgtcctc aatgagacct aggacaagtg cagactctaa agcttgcaca      1740
     gtctgctctc tatctgacct caatgagacc taggcccaat gcagactata aaggttctac      1800
     agtctgctct ctatctgtcc tcaatgagac ctaggcccaa tgcagactct aaagtttgca      1860
     cactctggtc tctttctgtc ctcaatgaga cctaggccaa atgcagactc taaaggttgc      1920
     acagtctgct ctctaactgt cctctatgag acataggccc aatgcagact ctaaaggttg      1980
     cacagtctgc tctctatgtg tcctcaatga gacctaggcc cagtgcagac tctaaaggtt      2040
     gcatagcatg ctctctatct gtcctcaatg atatctaggc ccaatgcaga ctctaagggt      2100
     tgccgagcct gctctctatc tgccctcaat gagacctagg cccaatgcag actctaaagg      2160
     ttgcacagtc ctctccctat ctgtcctcaa tgagacctag gcccaataga gactctaaag      2220
     gttgcacagt ctgctctcta tctgtcctca atgagaccca ggcccaatgc agactctaaa      2280
     cgttgcatag tctgctctct atctgtccgc aattagacct aggcccaatg cagactctaa      2340
     acgttgcaca gtctgctgtc tatctgtccg caattagacc taggcccaat gcagactcta      2400
     aaggttgcag agtctgctgt ctgtctgacc tcaaggagac ctaggcccaa tgcagactct      2460
     aaaggttgca cagtctggtc tctatctgtc ctcaatgaga cctaggccca gtgcagactc      2520
     taaagtttgc acattctgct ctctgtctgt cctcaaagag acctagggcc agtgcagact      2580
     ctaaaggttg cacagtctcc tctctatttg tcctcactga tacctaggcc cattgtagac      2640
     tctaaaggtt gcacagtctg ccctctatct gtcctcaatg agacctaggc ccaatgcaga      2700
     ctctaaagtt tcaacagtct ggtctctatc tgtcctcaat gagacctagg cccaatgccg      2760
     actctagagg ttgcacagtg tgctctctat ctgctctcaa tgagacctag gcccaatgca      2820
     gactctaaag gttgcacagt ctgctctcta actgccctca atgagaccta agcccaatgc      2880
     agactctaaa ggttgcacag tctggtcgct atctgtcctc aatgagaccc aggcccaatg      2940
     cagactctaa aggttgcaca gtctgctcta tatctgtcct caatgagacc taggaccagt      3000
     gccgactcta atggttgcct agtctgctct ctatctgtcc tcaatgagac gtaggcccaa      3060
     tgcagactct aaaggttgca cagtccggtc tctatctgtc ctcaatgaga cctaggccca      3120
     atgccgactc taaagtttgc acagtgtgct ctctatctgc tctcaatgag acctaggccc      3180
     aatgcagact ctaaaggttg cacagtctgc tctctaactg ccctcaatga gacctaggcc      3240
     caatgcagac tctaaacgtt gcatagtctg gtctctatct gccctcaatg agacctaggc      3300
     ccaatgcaga ctctagagtt tgcacagtct gctctctatc tgtcctcaat gagacctagg      3360
     ccaagtgcag actctaaagc ttgcacagtc tgctctctat ctgacctcaa tgagacctag      3420
     gcccaatgca gactataaag tttctacagt ctgctctcta tctgtcctca atgagaccta      3480
     ggcccaatgc tgactctaaa ggttgcacac tctggtctgt ttctgtcctc aatgagacct      3540
     aggccaaatg cagactctaa aggttgcaca gtctgctctc taactgtcct caatgagaca      3600
     taggcccaat gcagactcta aaggttgcac agtctgctct ctatgtgtcc tcaatgagac      3660
     ctaggcccaa tgcagaatct aaaggttgca tagtatgctc tctatctgtc ctcaataaga      3720
     tctaggccca atgcagactc taagggttgc cgagcctgct ctctatctgn nnnnnnnnnn      3780
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc cgtacctcca ttgtctgatg agaccaggcc      3900
     caatgcagac tctaaacgtt gcatagtctg ctctctatct gtccgcaatt agacctaggc      3960
     ccaatgcaga ctctaaaggt tgcacagtct gctgtctatc tgacctcaag gagacctagg      4020
     cccaatgcag actctaaagg ttgcacagtc tggtctcttt ctgtcctcaa tgacacctag      4080
     gcccagtgca gactctaaag tttgcacagt ctgctctctg tctgtcctca aagagaccta      4140
     ggcccagtgc agactctaaa ggttgcacag tctgctctct atctgtcctc aatgagacct      4200
     aggcccaatg cagactctaa aggttgcaca gtttgctctc tatctgccct caatgagacc      4260
     taggtccaat gcaaactcta aagtttgcac agtctggtct ctatctgtcc tcaatgagac      4320
     ctaggcccaa tgccgactct agaggttgca cagtgtgctc tctatctgct ctcaatgaga      4380
     cctaggccca atgcagactc taaaggttgc gcagtctgct ctctaaatgc cctcaatgag      4440
     acctaggccc aatgcagact ctagaggttg cacagtctgc tctctatctg tcctcaatga      4500
     gacctaggcc cagtgcagac tctaaaggtt gcacagtctg ctctctatct gtcctcaatg      4560
     agacccaggc ccaatgcaga ctctaaaggt tgcacagtct gctctctatc tgtcctcaat      4620
     gagacctagg tccaatgcag actctaaagg ttgcacagtc tgctctctat ctgccctcag      4680
     tgagacctag gcccaatgca gactctaaag gttgcacagt ctgctctcta tcggtcctca      4740
     atgagaccga ggcccaatgc agactctaaa ggttgcacag tctgctctct atctgccctc      4800
     aatgagacct aggcccaatg cagactctaa agtttgcaca gtctgctctc tgtctgccct      4860
     caatgagccc tagacccaat gcagactcta aaggttgcac agtctgctct ctatctgtcc      4920
     tcaatgagac ctaggcccaa tgcagactct aaaggttgca cagtctgctc tctatgtgcc      4980
     ctcaatgaga cctaggccca atgcagactc taatggttgc acagtctgct ctctatctgt      5040
     cctcaatgag actcaggctc aatgcagtct ctaaaggttg cacagtctgc tctctatctg      5100
     tcctcaatga gacctaggcc caatgcagac tctaaaggtt gcaccgtctg ctctctatct      5160
     gccctcaatg agacctaggc ccaatgcaga ctctaaaggt tgtacagtcg gctctctacc      5220
     tgccctcatt gagacctagg cccaatgcag actgtaaagg ttgcaccgtc tgttctctat      5280
     ctgccctcaa tgagacgtag gcccaatgca gactctaaag gttgtgcagt ctgctctcta      5340
     tgtgccctca atgagaccta ggcccaatgc agactctaaa ggttgcacag tctgctctct      5400
     atctgtcctc aatgagaccc aggctcaatg cagtctctaa aggttgcaca gtgtgctctc      5460
     tatctgacct caatgagacc ttggcccaat gcagactcta aaggttgcac agtcggctct      5520
     ctacctgccc tcaatgagac ctaggcccaa tgcagattct aaaggttgca cagtctgctc      5580
     tctatcggtc ctcaatgaga ccgaggctct atgcagactc taaaggttac acagtgtgct      5640
     ctctatctgt cctcaatgag acctagaccc aatgcagact ctaaagtttg cgcagtctgc      5700
     tctctatctg tcctcaatga gacctagggc cagtgcagac tctaaagttg catagtctgc      5760
     tctctatcag tcctcagtga gacctagacc taatgcagac tctaaagttt gcaaagtctg      5820
     ctctctatct ctcctcagtg agacctagac ccaatgcaga ctctaaagtt tgcacagtat      5880
     ggtctctata tgccctcaat gagacctagg cccagtgcag actcgaaagg ttgcacagtc      5940
     tgctctctat ctgtcctcaa tgagacctag gctcaatgca gactctaaag gttgcacagt      6000
     ctgccctcta tctgtcctca atgagaccta ggcccaatgc agactctaaa gtttgcacag      6060
     tctggtctct atctgtcctc aatgagacct aggcccaatg ccgactctag aggatgcaca      6120
     gtgtgctctc tatctgctct caatgagacc taggcccaat gcagactcta aaggttgcac      6180
     agtctgctct ctaactgccc tcaatgagac ctaggcccaa tgcagactct aaaggttgca      6240
     cagtctgttc tctatctgtc ctcaatgaga cctaggccaa gtgcagactc taaagcttgc      6300
     acagtctgct ctctatctga cctcaatgag acctaggccc aatgcagact ataaaggttc      6360
     tacagtctgc tctctatctg tcctcaatga gacctaggcc caatgcagac tctaaagttt      6420
     gcgcactctg gtctctttct gtcctcaatg agacctaggc caaatgcaga ctgtaaaggt      6480
     tgcacagcct gctctctaac tgtcctcaat gagacatagg cccaatgcag actctaaagg      6540
     ttgcacagtc tgctctctat gtgtcctcaa tgagacctag gcccagtgca gactctaaag      6600
     gttgcatagt atgctctcta tctgtcctca atgagatcta ggcccaatgc agactctaag      6660
     ggttcccgag cctgctctct atctgccctc aatgagacct aggcccaatg cagactctaa      6720
     aggttgcaca gtcctctccc tatctgtcct caatgagacc taggcccaat agagnnnnnn      6780
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      6840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaattca cagcatattg aagggaagta      6900
     aaaggcagct ttaaacctag catttttaat tattccattt caatgtctct tttcatgctg      6960
     tgcctattag aataaaataa aattttcaag tctttctggc ccccttctgc ctgctccaaa      7020
     acctaatggc acttgtggcg ttggacctcc tttcagctag agtgctgggc tgaagcagtt      7080
     gtggagaaca ctttgatccc agccagagta aaagctgagg acattcagta ataatttgtc      7140
     ttgcctaata atttgaaagt gcctaaggac taacctcaga acatcatgac cccaatgaat      7200
     gcttaaaaat aacaagttta aggagagatt gtgtgatcca tataatgctg taatgaagtg      7260
     attgacatca gtgtcctgag ctggctgggg gacatgtgga ggtgccagag tattttctac      7320
     agagtatcac agccgtgcaa gtggccagcc atggcattct gcatgttgga acaacccagt      7380
     gtgctgacag tattcatccc ccaacatcag gatctcaata aacccatctg agacccaaat      7440
     ctaaaaatca aagacaactc caactagatt tgattttctc cccaaaagtc aatccctcct      7500
     ttttacataa aagctgactc tggtacatcc tgaaaagagg aatggttctg tacccaggaa      7560
     ctaaagtcct agaaaccaag cctggatgcc agcagtagca gggacatcac gccatgagct      7620
     gaagaagcac tgttgggtag ccacagacca aatactacac tcttgggaat tgtctttagc      7680
     tctaagagaa aatgtgtcat gggctgtcta aatagtaggg ctgcattatt tatgtcatat      7740
     ttatgccttg atttttttcc aagaagactt gaggtttact aaaatatgtg caaaatgaga      7800
     cactgaggat aaaagaggat caagacttta gtgagaaaga accaactccc cattcagaaa      7860
     gctttcatat tggtcatggt ttgatcttag gactgctacc tgtgtcttat ttccttatct      7920
     ataacaaaaa gctacctaat taccaatttt atgtttgtta ctagcactac attataaagt      7980
     aaggatggaa gttctctata aattgattta tcctcccttc ctctctcaga aaaggaatgc      8040
     cttaagattt ccagtcttgc ccttttccga aagaaggcat cttggtgtga aggagtagga      8100
     aaaaaagcat cttttaaaaa aatccccgat ttgacatgta ctacctggag cactaaaccg      8160
     agtccacttt ccttttcctc atctgtacaa tggatttcaa agagggaaac tttgtcatat      8220
     gtgactgcat gaatgaacct gcaggacatt atgctaagta aaattagcca ggcacaaaag      8280
     gacaaatacc acatgatctc acttatatga aatggaatct aaaaaaactg aagtgaacct      8340
     gacctcaggc aaggagtgga gtggtggtta ccagaggctt ggcgggggca gggggcaggg      8400
     gggaagaagg atatgctggt cacaggatat gaagatggaa gtttgctata aattgatata      8460
     tcctcagttt ctctcttaga aaagaaatgc cttaagtttt caactaatat atagtaatcc      8520
     aagtcatgca aacatgttga aatacaagtg aatgggaatg cagttaatat atggatagca      8580
     ctgagacgtc cctgaaaatt ttttcagacg gaggaaataa atgttttgag atttattgca      8640
     cagcgtgctg actattgtaa tgtatatttc aaaattgcta agagtaaatt ttagatgttt      8700
     tcaccataaa aaaataagta tttcaagtga tggacgtatt aactagcttg atttaaacat      8760
     tctacattat atacatatat cataacatca ctttgtgccc ccaaaatgtg tacaattatt      8820
     tgttgattta caatcaaatt tttaaaaatt aaaaaatatt acctgtatct caggggttcc      8880
     atgaggacta aagatgagac tattgatatg aaagtccttg ataaaatgca gagctattta      8940
     tgaatcacag tgtttattat tttaactatt tataataatt tgatataagt tgcattaaac      9000
     atcctgggaa catattagtg ttataaaaac cgtaacagta tattaattct ctgaattttc      9060
     taccaactca cacatataat acacacatac atacaaacac tcacatgttg acacacaccc      9120
     aaaacagaaa taaacatatc cacagagccc tctgtttagg tgcttctttg atcccccaga      9180
     gtggcctgag caaaattcct aaccttatgt cttggtacac aagtgattaa gaatcagttg      9240
     tgagtaaggc ataaataata tgattctcaa aaaatgtggg catttctgtt gcctataatg      9300
     caacatatac atacagttct aagatacctt aaatcctata aaatcacaaa ttaaaataat      9360
     aggactatag aaaacctagg agtgggacag aacactcaaa agtctatgca acattttaac      9420
     caccgcacta acaaaaataa taatgaaata tgttatcaaa atacaagcag agttaaaaca      9480
     tcatgttaaa ttcctaatac gtagagatag ctaaatatgg ctgtatattt ctttttttct      9540
     tttttttttt ttgagacgga ttcttgctct gttgcccagg ctggagtgca gtggtatggt      9600
     ctcggctccc tgcaacttct gcctcccggg ttcaagtgat tctcctgcct cagtctccca      9660
     agtagctggg attataggca cctgtcacca cgcctggcta attttttgta tttttagtag      9720
     agacagggtt tcaccatgtt ggccaggctg gtctcgaact cctgaccttg tgatccacgc      9780
     acatcggcct cccaaagtgc tgggattaca agcgtgagcc accgctcact aaaggtgatc      9840
     tgatggaata aagtttaagc aatggtagat tctactaagt ttggagataa gggaaaaaca      9900
     cacaaaaatc aaaggtaact gtgcagtaag tcctccaaaa atggagcatg tggcaaaaat      9960
     aagccaagaa gaaattatgg cttgtatatc agttatctat tgctgcatat caaacttccc     10020
     caaatgtagt aacttaaaac accaccattt attagtgtgt ctataggtca gctgactggt     10080
     tttactgacc tgggccagcc ttgaccgatc tcagcaagat gcaaggaccg ttgcattcgt     10140
     gatcagtcag caggtcagca gtagcctggc taaccaagaa ggaactccag tgtgatattc     10200
     tctgcttgaa ggaattttta aatctttagc aggttagtct ggacttattc atgtaatggt     10260
     catacagttt caatggaaca aatggaattg tggaaggtct cttgaggcct aggcttgaaa     10320
     ctggtaggcc attaattctg cccctgttga ctggccagaa caagtcacag agccaattca     10380
     tattcaa                                                               10387
//


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