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EBI Dbfetch

ID   CT573439; SV 9; linear; genomic DNA; STD; VRT; 10223 BP.
XX
AC   CT573439;
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DT   04-FEB-2006 (Rel. 86, Created)
DT   13-DEC-2012 (Rel. 115, Last updated, Version 10)
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DE   Zebrafish DNA sequence from clone CH211-182P21 in linkage group 3
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KW   GAP_CLOSURE; HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-10223
RG   Genome Reference Consortium
RA   Johnson C.;
RT   ;
RL   Submitted (13-DEC-2012) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: grc-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
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DR   MD5; c9b76afeb2ce68ddda0ba78d1e30bc5b.
DR   ENA-CON; FR651163.
DR   ENA-CON; CT991486.
DR   Ensembl-Gn; ENSDARG00000078222; danio_rerio.
DR   Ensembl-Scaffolds; CT573439.9:1-10223; danio_rerio.
DR   Ensembl-Tr; ENSDART00000110080; danio_rerio.
DR   Ensembl-Tr; ENSDART00000149914; danio_rerio.
DR   GOA; E7F732.
DR   GOA; F8W5R9.
DR   InterPro; IPR000719; Prot_kinase_dom.
DR   InterPro; IPR001245; Ser-Thr/Tyr_kinase_cat_dom.
DR   InterPro; IPR008266; Tyr_kinase_AS.
DR   InterPro; IPR011009; Kinase-like_dom.
DR   UniProtKB/TrEMBL; E7F732; E7F732_DANRE.
DR   UniProtKB/TrEMBL; F8W5R9; F8W5R9_DANRE.
DR   ZFIN; ZDB-GENE-100812-4; aatka.
XX
CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: grc-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats. Where
CC   this is found the longest good quality representation will be submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of a
CC   tandem repeat of more than 10kb in length where it has not been possible to
CC   anchor the base differences between repeat copies. The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   CH211-182P21 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
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FH   Key             Location/Qualifiers
FH
FT   source          1..10223
FT                   /organism="Danio rerio"
FT                   /chromosome="3"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-182P21"
FT                   /db_xref="taxon:7955"
XX
SQ   Sequence 10223 BP; 3368 A; 1827 C; 1840 G; 3188 T; 0 other;
     gaattcacac ttctcaaacg atccgggaaa caggcctggg cacggtacgg atggcatagt        60
     gtgagtaggc cctaaatgca gcttgaacgc acaacctagt ggcacttata aaattaatgt       120
     accagaagaa ttttgtgtaa cactttaatt taaagggaca taattagaca aattcaatgc       180
     atccaagtac tacatatatt acaattatgc ataattacat ttattaacca accctaacaa       240
     acctaaactc aaaccacatt ctaatccaaa ccacatagta attaatttat accactcagt       300
     agttaaatga ataattatgt cacactttac ttgtcataaa acctgtcact tttaaaataa       360
     attcaattcg agttcatttg taaagtgctc aaaaacagaa aaggatttgt gtataaggtg       420
     gaaagtaaac atagttaaac tgcatttata caatacttag ctttctttca aaaagctgat       480
     atctacacac tttattaggt acacctgtcc aactgcttgt taacgcaaat tcctaatcag       540
     ccagtcacat ggcagcagct caatgcattt aagcatgtag acatggtcaa aacgatctgc       600
     agttcaaact gagcatcaga atggggaaga aaggtgattt aagtgacttt gaacctggca       660
     tggttgttgg tatcagacgg gcttgtctga gtatttcaga aactgctgat ctactgagat       720
     tttaacacac agccatctct aggatattga ccttattctc cgcagacgag cgggcgctgc       780
     catttgaatc tttttggcac gagacttccg gtctctttca cttccattca tttttagaca       840
     ttaaaaactg ctcgtttcgc tgtttgatgt tgcaaactga tatttccttg ttgtattatt       900
     ctaattggtc tgtatagtca tgcaaacatt tgtttgtaga gcaagtagtt tgaccgtttt       960
     ttgtcgttta ttattccttg tcatttctct cataggcgac tgaaacggaa gttctaagac      1020
     aatcgcgaaa acgggcgcac ttccgcattt gagaataagg tcaatacata gaatggtccg      1080
     aacaagaaaa aatatccagt gagtggcagt tctgtgtgcg caaatgactt gttgatgcca      1140
     gaggtcagag gagaatggcc aggctggttc tagctgatag aaaggaaaca gtaatttaaa      1200
     taaccacttg ttacaaccca ggtatgcagt agagcatctc tgaatgcaca acacgtccaa      1260
     ccttgaagtg gaaggactac agcagcagag accacgacgg gtgccactcc tgtcagctaa      1320
     gaaaaggaaa ctgagtctac aatttgcaca ggctcgccag aattggacaa tagaagatta      1380
     gaaaatggtt gcctggacta atgagtctcc atttctgctg cgacattcag atggttgggt      1440
     cataattgtt caacaacaag aaaacaaaga tccatcctgc ctgtaccgct gatagtggta      1500
     gtgtattggt gtgggggata ttttcttagc acactttggg ctcattagta ccaattgagc      1560
     atcgtgtcaa cgccacagcc tacctgagta ttgttgctga ctatgtcaat ccctttatga      1620
     ccacagtgta cccattctga tggctagttc cagcaggata acgcaccatg tcataaagcc      1680
     cgaataatct cagactagtt ttttttttaa catgacaatg agttctctgt agtcaaacgg      1740
     cctccacagt caccagactt aatacaataa agcatctttg ggatgtggta gaatgggaga      1800
     tttacatcat gtgcaggcga caaatctgaa gcaactgcgt gatgctatca tgtcatcgtg      1860
     gaccaacatc tgaggaattt tcccagtacc ttgttgaatc tatgccatga aggatcaggc      1920
     agttctgaag gcaaaagggg tccaacccag tacttgtaat gtgtacataa agtggccagt      1980
     gagtgtatgt gtataataca tgttcaatga agagtatctg tacattaagt gcgccctatt      2040
     ggtataaaac cacttatgat ataagcccca tgtaagaaca atctcaatta cctttatttt      2100
     gttttacact tataatttat tgtgaatgga aattgttaag agcattttaa aatgaaaaat      2160
     gtcatcccca catcttatat agtttgaaga caatgtagtt caacagccta caactttcat      2220
     agcacaccat tgtcatcgca ggcacattgc tggctgtgtt tcttattaat aaaacaatac      2280
     tgaaagtgaa atccacacta ttctcagatt tgtcactgac attccttatg gtgtcacaag      2340
     gctgtcaaga atgttagaga caaatttgag gatagtagaa aaagagtaca aaacagactc      2400
     tctctgtggc cattgtaaat ggatggcccc ggacagaaaa aaaaaaaaaa aaaaaagcag      2460
     tggccttgtt tatgttctct cagcttacag agagatggag aatgaaccat ctctggaagt      2520
     acaacacaca tctgtcggtt gcataatgtg ccgtgtgagc ggcccggagg actcttggca      2580
     tgatggatgc atggggaaac tggactgcaa gacggaaagg aagtttctta tgcatggagc      2640
     actagagagt acagatgtag atgaagctgt ttttaacaac cgtattgtga acagatatga      2700
     aacagacgtg ccttcagctc aaacgtttgt atttttttct atcaaaacag gtatcagcgt      2760
     ttaaacatgt ttaagcatcc aaatgtttga gattttttta aatgaatcga tagttttttt      2820
     atgcaaggat gcattaaata aaattctaaa cagcattttc aacattgata ataatcagaa      2880
     atgtatcaaa tcggcatata ccagtcattt ctgaaggatc atgtgacaag gaaaactaga      2940
     aaattttatt taatttggaa acctaattta gtgaaactac tccaaagcta ttcagcacat      3000
     agtctacacc atcttatcta attttgtaaa acattacaga atgtgttact gaagcttgct      3060
     ggccaaacag gattactgtt gtcttatgtc aaatgtttgg tttgaacgca ctttaaaagt      3120
     tatgtttgct ctttgttcat tctacatatt taaatgagtt aaaacaatta ggtttcccat      3180
     gttcaatcaa cttaaatttg taaaaacaaa atagctaact taatttcctc aacttgtccc      3240
     aacacaaatc gactgagtgg aacccagcat tttttacagt gtgtgaaaaa tatgaaacca      3300
     aaatgttctt gtaccagtca cacttgtaat gcaagccaaa ttcccttttt aagaagtgaa      3360
     ttcccaattc ccctttacaa atctgctcac tcagtggcca tgttagcaat gcctctaagc      3420
     agttcatcca agttcaaagt cctaaactca actcagttta tttctagagt actttcaacc      3480
     agccacaatt ggtaccacaa ttggtaaaac acataataca tacaaacata caaggagtac      3540
     aaccagagta cctaaactca caagacatta ttaaaagata aagaaaatat gtgtgttttc      3600
     agtgacctct gaaaagactc aaaagctgga gaaattctta tagtggtaga atattccaaa      3660
     gtcttggagc tgctactgaa aaagctccat cacctcgaca tcaagtgtcc tgtcccatta      3720
     ttgttgttgc ttaagcacta attaaaaaaa taaataaata aaatgctcca gctaccgcgc      3780
     atgcacaatg aattgaataa caccaatatg ctttatgaat gtttctgtgg taaccagagg      3840
     atggcagttg caaacactaa acaaaacaga gacataactt gcagcaaaga tcacaggatg      3900
     ccagtagaaa gacattatgt gtgatgtgat ttaatataat ttgtctagtc aaaatcaggc      3960
     atgcaacagt cgccatatta tagggattgc ttttaacaaa caagtgaaac tttacagacc      4020
     ccttccccaa gaaacttcat ggctacataa aaagattaac gtttgggtat ttcaatcaga      4080
     aagtgggttt gtctttactg tggcagcata tactaagcat tgcatgcctc tacattcaaa      4140
     gtaatagtag cctttctaaa tatagactat atatttatcc gagtctctgc acaaacctat      4200
     ggtgcctgct gtatctatat gatctgcaaa gcatttttca ttgatctaaa aagagaggat      4260
     tctgtagtaa accccacatg atatatgaca attcagttag ccaaaactgg tctatttgga      4320
     cgaaaacaaa aaaacaaaac aacactggcc actttcagat aaactacttg aacaacgtaa      4380
     aatatcctac attttttgga ttggaatttc tttattgtcc ccaaagtgca atttggttca      4440
     cagcaatggc ttacacataa gagagtctaa tggaatgttc acaccagaca cggatgaaat      4500
     gacaagcatg agggattttt atgttaagtg tcctcaacat atcctaatcc tatctaatcc      4560
     ttgcggatcg ctggagaatt gcaagcacaa aacactaaag aactgcaact accagcatgc      4620
     acctcacaca cacctgttcc tgttttccac tcattgcaaa cacacacagc tatagctaat      4680
     aaagtgctat acatccaaag cttcacaatc atgagggggg agttgagata caaactgtag      4740
     tcgaatagga gcaaacggta catgctggga aacccagagc gtagtcataa ataggcgaat      4800
     ggtcagtgct ggccataagc aacataatca aaccatcaaa gcaagggtca aacaaaggaa      4860
     tgtaagacaa ggtaaggaaa atgggttcac caaacagttc gcaagactta gcccagatga      4920
     gtgtgtgtgt gtgtgtgtgt gtttaagagg tgttaaataa cctgtgtaat cagtcctgaa      4980
     cagctttagt tgtgtctgtt tgcaatcatg ggggatctag gtcaggtgtg tgagtgaatt      5040
     gcatatggga tttgtagtgc agttgaatgt gatcgttctg cagcagcctg caagagcaac      5100
     actgctggtg aaagacatga ttagacttcc tgtggctttt ttgcagaaat gaggtggcat      5160
     gaatgacgcc atttgaatga atgacatttg aatgaatgca aattgtgcat tatgggtgat      5220
     tgatgcaggt aatgcgtgtt tcgcacaaat cgtttaatta ggaaaaatct gaaatttggc      5280
     agacatacag tgaaagaaat caagtccata ggcataagac taatatggta ataaggtata      5340
     caacggtttg gaaaattcaa ggtcttaaaa ctgccaagat tttctttaat atcgttccta      5400
     aggtttgtga aagattttta tttacatttt ttttaggaca actgtatcta aagcagaaaa      5460
     catatccaaa gatgccgttt taaattgtaa agaaacctgt gtttttggat caagtcaagt      5520
     caatgatata tttcattatt cagcctgaca tgtttactgc tccaaaatat ttaaaatgtt      5580
     actcaaaata aaatatttaa acacatttta aaagaatata ttttagagca gtaatcacaa      5640
     taccatgaaa taataagact gtgatattat tatccaaggt tatcatacca tcagaatctt      5700
     atacctgccc atgcctaatc aagtcatgtt ttttttccag ggaataatat ttctaaaaga      5760
     gctgctcaca tggaattaaa ccagattttg aaaaatccca aacaatacaa acataaaaat      5820
     aaaacaaaac aaatctgatg tttaataaca aatggattga cacaagaata ttgtactgaa      5880
     gtattgaaac gtatttaata ctttatataa aggttttttt tggcaatgca gtttaaaaat      5940
     gcctctcata tggagaatga agtgggattt ttttttcaca gactttacca gtgtaaaaat      6000
     cttgatagtt ctgtgggtat tgctattata ggacctttag cttttctcca acaacttttg      6060
     atgttgaaaa aaaaaaaaaa aaaaaggggg gggacttttt tagtagttag aagtgtatat      6120
     attttctaga ttttatatgt aaattatggt gcaaaaacct gataataaca tactttatgt      6180
     tattttacag ccttagttta ttcatttttc ttcagtttag tccctttatt catcaggggt      6240
     tgccacagcg gaatgaaccg ccaacttacc cagcatatgt tttacacagc ggatgccttt      6300
     ccagccgcaa cctaattaca gtccatacac acattcacac tcatacacta cggctaattt      6360
     agttcataag ggtatcagcg gggtcttaaa aagtctaaaa aatttcttaa atctcaaaag      6420
     ctaaatttta gatcttaaaa agtcttaaat ctactaaaat gttgtgttgt agattttaaa      6480
     tctttttttt ttaacctgtc ttaatttttc taaaaacttt ccattcattt actgctgagg      6540
     atactgatct aacctaaatt ttatattatt aaattattat tgtagacaga attgacagct      6600
     atcttttgtt ctattcttgg taagggttat aaggtttgtg aatggatata tttcaaaatt      6660
     aataaaaata acttttaaaa aaatattaat tttgtattat taaatgtatt aaattgtaat      6720
     cattttttga taggacaagt aaaaatcttg tctaactggg atacattaaa acattcttag      6780
     catttaaccc tgtttaagtc taaaatttca ttcataatgg tcttaaaaat gtctcaaaaa      6840
     gtcattttta cttggtgaaa cctgcagaaa ccatggttta ttcatttcac ctgtaccgca      6900
     tgtctttaaa ctgtggggga aatcggagca accagaggaa acccacggga acacagggag      6960
     aacatgcaaa ctccaaacag aaatgtcaac tgatcctaag ccaccttgtc gccccagact      7020
     taattcttta tatatagttt ctgacataat atattgtttc aatctactaa aatgtcaata      7080
     aactttactg tgttaaactg ttcaattgaa ttttcaccat caaaagtaaa tagagcagag      7140
     ctcatcgtcc cataatgcaa ttcataaggc tttaaaaaac cctgtgaatg acgaaatata      7200
     aaacctgtta actaatgggt atttttggag tgcacccaat gcaccaaatc aggaaacccc      7260
     attcacaact gcatggcaac aacccccagg ataactcagg atatttagag tgagttttgc      7320
     aaatgcaaac aacgttgaca tttcctttaa gaatgctaaa aatctgctga atgtattcca      7380
     cataatttta cctcaagtca aatccaatgt ctgtgtgtga agccgtgcga gtcaggtttt      7440
     ctccctatga ctcacactct ctctgtctgc gtggagcatc aggggagggt tggggagaca      7500
     gtgggatggt ggagccgcac gcaggcagcg attggacaaa agagttttag gagccagcca      7560
     attgcctccg gactgttcgt tgcctgtggt tacggccttg tgattggccc aggtgttgca      7620
     gagtgagagg gtagcactga gtccctcgtg atattgacaa ggactcggtc atggttggac      7680
     tgctcgtttt ttgtcttcat cttcttgcat gttgtattaa agcgaagagc cggaaattaa      7740
     ctcttgacta aatgcaatga agcacaacct ccgcgcttta acatccttgg ctatttctta      7800
     actcctaaaa ctacattcac agcttttcat tgactgtgaa cataagcttc agtgtggaag      7860
     acgtcaagca tggagaatct tacagtgcag gctcacagtt atggctataa aagtacctac      7920
     ggcagacatc cgcatcatgt agaagacatc tatgttcaaa gcaaataaca gagtctccta      7980
     actttattct tgaagtccac tatcatgcag tttagattca agcagggtca ggaaaggcca      8040
     atcaattcaa gatgaggggg aacaaaaaaa aaaaaaaaac tgaagtaaaa tgtgaaatgt      8100
     aagtttactg tcagtttgct ccatcatgtt ggatattgca tcatatttag ttttcatttt      8160
     accgtttttt acagtatttt tttttttttc taaatcagtt atactctatt ctgttgagct      8220
     tatgaattca gtagctaatc agatggattt agattagtca ccgctgggat tgagttattt      8280
     ttaaatgttt gccttgcagt tgctacagta gactaacatc agactttgaa gagatagaat      8340
     gtcaatcttg caaacacaaa tgattgtata tatatatata tatatatatt cttttaatcg      8400
     ataataatga tcatgttaca gtatttaaag tagtaataga cagtaaggat tttgagaatc      8460
     ataaaaatgt agcactagcc tgtaattatt tccttatttt atttacactt tatgtagttg      8520
     acataattgg cttttttttt caaaatttag tgcctctatt tcaatgatct aggcgcaaag      8580
     tgtaaaatgc atggtgcaaa agcattaggg gaagtcagaa tccacttttg ctattttaag      8640
     gatggaaaaa tatgttctgt gccctggtac atggtctaac agttttatta ttatgcttat      8700
     taatttgtca ataagaatta tgagtgtgct ttgagtataa attgcattaa accaatcaga      8760
     gcctcatctc cccattccct ttaagagtca gttgtgtcat atcatggcac atttgctatt      8820
     tacatggtgg actttatttg tagtaaaact aaatgcttca ctagcaagaa aaccgttaaa      8880
     cagaccatat gcagcgtgag gataaagaac gagcctcctc cattcagcct cttcttttac      8940
     tttttatttt actccttaac tttcgtggat aaggaaacgg tgttgtacgc actggagttg      9000
     tacctacata tttaattttg tttgttaagc acagatttgt ttcaaaacta tttctaaata      9060
     cagttctaat ttccagcaaa cgaataaatg actggcattc tacaactgca aattattcag      9120
     attatttaaa ttagtcatta ataaactgaa aaaagccccc agagctgaaa gcataaaggt      9180
     agtggctttt atatttatgt agaaaatata aatttttgta acattttaat cctttttttt      9240
     aatatgtaaa gatatttgta ggttgctgta ctgtgttgct gtgtattaag caatgtgtag      9300
     acctgtatag gcgcataact aatgtgctct gcgctgaaca gttggtcagt ggtacagtct      9360
     gttttggttc ctcaaaacat caacaacaac gcatcaacaa tgcgtctctt cagaccagca      9420
     catccatgag ttcacaaagt ggcccaaaaa gatttgctat ttaatcaaag tggtgcaaaa      9480
     cgtgaaaatt agggttttgc tggtctgaaa atagcaacaa atcatgccaa acatgtcttg      9540
     cacatttatt gtaatgagct aatgataggg tcccatgtgt tcaagttcaa tttaagtgtt      9600
     tggcattaaa aaaaacacaa atacaattaa tacaggtata ataaaaaaaa atattcttat      9660
     ataaatgtta aaaatgtccc tggaagtcac ttcaagtaca gatagctact ttctttctaa      9720
     tttatccata attatttatt gttagtcaat ttatatcatg gcctgtgtta gggaaagttt      9780
     ttttttggaa gtaacgcatt acaatagagt tactccccaa aaagtaaata gctgtgttaa      9840
     ttagttactt tctatggtaa gtaatgtgct acattacttt tgcattactt tttctgacct      9900
     ggcttgaact ctttcagaac ttgcagaggt tttctttttt tatttttatt tatttatttt      9960
     tttttttaaa gagaagctct gcagttaaca acacactgta tttcctttat ttaccttaaa     10020
     aaaaacaaac aaacaaacaa acaaaaaaac acatttaaac taatgtagga tggtgttatc     10080
     ttcagagaaa ctcctgacca cagagctata catgctgtat atacagatta atgaaagttt     10140
     aaagcaataa gtttgccact tctgtacttt ttgtcttatt agtgaaataa aaccactgtc     10200
     ctttcagata atcctctttt tct                                             10223
//


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