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EBI Dbfetch

ID   CT033815; SV 3; linear; genomic DNA; STD; VRT; 9202 BP.
XX
AC   CT033815;
XX
DT   23-OCT-2005 (Rel. 85, Created)
DT   22-DEC-2005 (Rel. 86, Last updated, Version 3)
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DE   Zebrafish DNA sequence from clone CH73-352G6 in linkage group 6
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-9202
RA   Auger K.;
RT   ;
RL   Submitted (22-DEC-2005) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
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DR   MD5; 505bbf5c8f1fae8293888539e729d2e3.
DR   ENA-CON; CT992001.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of
CC   a tandem repeat of more than 10kb in length where it has not been possible
CC   to anchor the base differences between repeat copies.  The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   CH73-352G6 is from a Zebrafish BAC library
CC   VECTOR: pTARBAC2.1
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FH   Key             Location/Qualifiers
FH
FT   source          1..9202
FT                   /organism="Danio rerio"
FT                   /chromosome="6"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-73"
FT                   /clone="CH73-352G6"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 9202 BP; 2846 A; 1578 C; 1451 G; 3327 T; 0 other;
     atgaaaatga aagtttagcc tattaaaatc aaaagtgtgt taattttttt ttacttgtat        60
     tattcagcga ttcctctgag taccactaga aggaagcctg cgtaccactt gtggtacatg       120
     taccacagtt tgagaaccac tgatttgctg catttataaa gcgccaatgt cttaagtatg       180
     atgcgattta ctttctatgt gcaatttttg cacatgattt gcactgatat ttctactcag       240
     ccaatcccca taaacaagaa aaaataaagt agtgactgca ggtggaagga aagtagtgga       300
     gtaaaagtaa tgatcctgca ccaaaaattt actcaaggga agttaaaagt acacattttt       360
     gaaacgactt ggtaaagtac gaattcctga gaaaaactac tcaattacag taatttgagt       420
     atttctaatc tgttacttta caccactgac catatacggt cattcatttc tgactcaatt       480
     tattaattct caagcatgtg caattgtcag tggcagattt gggtaacatg ggtgatcgcc       540
     ttggatggca tggagacacc accgctcccc ctcgctcttc tcgaccgatg tttgcctaga       600
     gtgccagtta agcttgcaac ggtactggca attgtcttga caaatgaaat cttttttaag       660
     ctaaaaacag aattattcag caaaatatat ttgtgatttg tcactctgct gatatctctg       720
     aattgattta tacagaactg ctgaattcat ttaaagtatt taagacaaac cacattacat       780
     tatacagtaa gtaattaact tatttaaaca ataaacagta acctcttact ttttctgtgg       840
     aaaagtaatc taattaatta cagtaactaa tcactctgta actaatattg atacttacta       900
     gtgcacacca taattattaa taacaataaa tgctgtatgt tatacaaaaa atgtgtgtcc       960
     ttgtagaatg ttgaaatgag tttttcaagg gtacatgact gtatgtgatg aaaggtacct      1020
     attgaagtga taaacctagc aaactttatt aaactagtta atattaccca cactgcccta      1080
     aatgtagaag atagacttat aaacagatac aaaatatcta atgataattg aagggcctta      1140
     tagggttgga catggtcagc aacaatactc aggtaggctg tggtgttgac atgatgctca      1200
     attagtacta atcggcccat agtgtgccaa gaaaacattc cacacaccat tacaccacca      1260
     ccaccagcct gaaccattaa tacaaggcag gatggatcca cgatttcata aatgtcgcag      1320
     cagaaatcga gactcatcag atcaggcaac gtttttccaa tcttctgttg tccaattttg      1380
     atgagcctgt gagaatcgta gcctcagttt cctgttctta gctgacagga gtggcaccag      1440
     gtgtgttctt cttctgctgt agcccatccg cctcaaggtt ggaagttttg tgcgttcaga      1500
     gatgctcttc tgcacacctc ggttgtaacg agtgcttatt tgagtggctg ttgccttaat      1560
     cagctcgaac cagtctggtc agtctcctct gacttctggc atcaacaagg catttgcggc      1620
     cacagaactg ccgctcactg gatagtttct ctttttcaga ccattctctg taaaccctag      1680
     agatggttgt gcgtgaaaat actgctgcta taaagccatt tttacaccac agaaacaact      1740
     gtcacacaca tgcacactcc aacacacaca aagcccaaac acacaataag aatcggctgc      1800
     tttaacttta tgaattatta ttatgcaggt atttttaaca ttagaaaatt taccctttac      1860
     ttaagtcaaa aacgagtgtt gcccactgat taaacattga tgaaaactcc acactgatga      1920
     gggaaaacct agacattcac agagtttgcg atgaagatga cgttgtttct tcatgcaaaa      1980
     tacatttgag gattgaattc caattgagcc tctttattag cggtttagtg gagacgggtc      2040
     atttttgacc taaaaggcaa acgctgtata cagaattcta ggacaatagg taaatttaaa      2100
     aaaaaaatca tacttgtatt tacatacttt attatcagta tctattcatt ttaaagtcat      2160
     actaaataca gtgggtttaa cattacctat ttaatagata ctagttattt ttaggtaccc      2220
     tcttataaga cactatattc tgggattatt ataattctta ttttattaat cacaactgat      2280
     ttttacttgc cttatgacag atttgccaaa attgagtgct attaaaaatc taagcagtaa      2340
     catttatagt aagaactata gtgtgtaatg attaggtatt gtgagatcta ataaataatc      2400
     agttgtatct catgaataaa tataaactaa tacaaattaa ttagtaaacg aaaaattagg      2460
     ctaaaagcta aaaagaccta tttataaacc ttaaaactga tatttatttt aaaaagttat      2520
     aataaaatac aaaacaaaaa atgaaatgac agattaaaaa acagaaaatt gaaatgaaaa      2580
     ctatctcata tgaatattta cataagttct agatttctgg tgtacagaat ctcatccaac      2640
     agcagatggc agcacattta catttattat accaactcaa catttctgac acagacccta      2700
     ttgctccatt tgtttaaaga ggcagtatat ttattgtgtt gtgttgtgtt gtgttgtaaa      2760
     tgaacccttt taacagatta ggattaaaca atatatactg cacaacatta aataatgcat      2820
     tttgtaacgc gttactcata ttttacatta acataagcca aacactgtaa cattttcctt      2880
     tccaagaact aattatcaat tattatctaa taataatatt gttaaataac actatttaag      2940
     taattagggt ttatttgaga attctttgtg tgtgtatgta tgtatgtata tgttgcaatt      3000
     attcgattat tccctttcat aatgtaatca tttccaatca tctgtcttta attatttata      3060
     taatttatgc tttacttttt tattttattt ccccatatac tttattactt cctattaatg      3120
     ctttgaatat ttatataatt tatatttcga tcattatttt taatttatta tctacatatg      3180
     ttttattact tcttatttat tgtttgcata tttatataat gtatttgtat tgttattttt      3240
     attgtatttt ctccatatat tttattactt atttatgctt tgaatattta tataattagt      3300
     ttttattatt atctttagtg tattttttcc atattttttc aaaaaattct tattgattct      3360
     ttaattatat tttatatttt aattgttgtt tttattgcct ttctttatat atgttattat      3420
     tacttcttta cgctttgaat gtttgtataa tttatctttt gattgtcatt tttgttgtat      3480
     tatctttata tattttatca tctcttaatt atgctttgaa tatttataaa atgtatgttt      3540
     ggattgtcct tttattgtat tttctccata tatttttttt acttattatt tacactttga      3600
     atatttatat aatttgtttt tttgtctttt tttttgtatt ttctccatct atctcattac      3660
     tttttaataa tgctttgaat ttttatacaa tatatcgttg gattgtcatt ttatcgcatt      3720
     ttctctatat attttctcca tatagtttat cttattatct aggctttgaa tatttatata      3780
     tgttttttat tggtattttt agtgtatttt ttccatatat ttttaaaact tcttatttat      3840
     tctttgatta taatttctat tttgttttta ttgcacttct ctatatgtta ttattactac      3900
     ttatttatgc tttgaatatt tataaaatgt atcttttgat tgtcgttttt gttgtatttt      3960
     ctttaaatat tttattactt cttatttatg ttttgaatat ttatacaatt tgcctttgga      4020
     ttgtcatttt atagaatttt gtctatttat tttattactt attatttatg ctttgaataa      4080
     tcatactatt tatgttttta atgtaattat tattggattt actccatata ttttttatat      4140
     ttcttgttta tgcttttaat attcataaaa atgtatcttt cgattttcat tgtttaatgt      4200
     attttctcta tatattttgt tacttcttat ttattctttg attataattc atcttttcat      4260
     tgtcattctt tttgcgtttt ctctatattt tttaacttct cattctagct ttaaatattt      4320
     ctataataag agaaaaggtt tttaacatca caatgacttc gttaaacacc atttttacat      4380
     tcctattgtt tatgataaaa aatacttgtt tcagatcagc acaaattcaa caataatcaa      4440
     tactcatgtc atcatcattc ttttgtctgc tgcttctgct tttttccctc ttctttcctg      4500
     acagaagaca agacaaaact tgctgttgac aggttttggg tattagacaa aactagacaa      4560
     aacaaatata ctctgataga atctactgta atatatctga tgccgagagc tgatctgata      4620
     tatatttatt aaaaaaaagt atgccatcat caactgtttt ggttgcacta gaggtataaa      4680
     aacacagcaa tgggaaagaa atcgaaaaga tctaaattat tcaggattta tgtgtttgct      4740
     tatcctccct tcatttccac cattttttaa acaaacacgc acaaacaccc acacataaga      4800
     cctgcacttc aatttgcaac tcattgttcg ctgaaaattt ttaattataa tataatggat      4860
     ttaatctcat tccccgtcta gctaaaaaaa aaacaaagat aaaagaataa ttatataaat      4920
     aaataaatcc ctccgtttac aaagtctacg taaagcgaac ttttgattga aaacagtttg      4980
     attgaatttt tttccttttg agagagagca taattaagag ccctcttcaa cagttaaaga      5040
     catgacatta gcgtgagtaa aaatcatcat ttgtccctga attgcagttt gtctctcttg      5100
     gcaactcaag gatttccaaa tgatcatgtc ttattctagt tcttttgatt atgctgccca      5160
     cgctagagct gcactttagg atattaatgt gaactccacg agtgtaaaga agcacacggg      5220
     tagctcatat gaagtaggtt gggaggttaa tatccaaaca tttcgttcac ttttttactg      5280
     cgcttacaaa tgcgggttta ataaccacag cagatgatgg attcaatata aaacaaagga      5340
     aagctcactc taccttaaat ggccattgta cattttattg cattcatttg acatattcat      5400
     gaatatttta tatttatata ttggtcacaa tttattttag ggtgcacttc ttggtgttaa      5460
     taataataat cattatgact attcattaaa taataataat ctacatctac atctatgact      5520
     tttgcctcaa taaactccta atttgctgct taataatagt tattaaggta gtttggtcaa      5580
     attatttcac tgtaaaaaaa aatccataca gttccttcat gtaatccaaa cataaatcga      5640
     ttaagttaat ttaatggttt tagcaaattt aagtggatta aacatagttg agcacgaatt      5700
     gtgttgattc agcttatttt aaacaagtag tttgaacaac tagcaatgat ctttttttga      5760
     gtgtaggtat gcctatagga ttatgtagaa gacgatcaca gagaatttgt acttcataag      5820
     taaataaaca gctaatattt taataagagg caattaataa gccagttaat agtgggtatt      5880
     ggtatttaca ctattgtgtt aagcgtaatt ataacctgca tccacatttc tttgtgacat      5940
     tgaataatag gaaacaaatt gtcaattatt ttggtttata atgacatgat ggaatcaagc      6000
     acactgcaaa aaatactttt cttactttga atttctgtct tatttcttgt ccaaatcctt      6060
     aaattaagaa gcattttcta gacaagtaaa acatgatatt gttttcagta ataataataa      6120
     aaaaataagt agttttttac ccaaaaataa gcaaaataat ctgtcaatat ggtgagcaat      6180
     attttgcttg cattagtaga ttattttgct tgttttaagg aaaaattctg ttaactttta      6240
     cttatatttc tgaaaacaag accatatttt tacttgtcta gataatgctt tttgatttaa      6300
     gaattattag aaatttgaca tagaaacaag agaaaaactt aagcaaggca tttattgcag      6360
     ttgttaattt tgtaaatctc ccattcctaa acatcccaaa aaatttgaga tggtgagtgt      6420
     ggaggtcatt tgagtatagc gaacatgtta aaaaaaaaca gttggagatg atttaagttt      6480
     gtgacatgat cacacattat cctggccaca ctcccctttt tcccgggagt ctcccgtatt      6540
     tcagacccat ctcccgtatt gccgtaccct accccatccc ccccctccac taatctcacg      6600
     atatttgtta aacgttatat ttaattcatc ttgttgtcta tatctaacga cagatttgcc      6660
     gactttggtc ttttgaatct aacacttgtt ctcaggtaac atgttttggc tgagctcaaa      6720
     gataattaat gcaaccgcgt acactgattc tgcacacttg actgattgtt tgcctttatt      6780
     tccaataatg tataaactta ttgcacgtta tacttttata acagccatta ttgattatta      6840
     aaactgatat ttagcaaaag agagggtatg tttcgtattt tcaatgaaaa taaaaggagg      6900
     ctgttatgtt ataggctcag tgttgctata aatatgcata gagtgaaaat gatgctcata      6960
     taaatatgca tcaacatttt tgatggttgt taagttgcta atatcaaaag agaaaatagg      7020
     cagttcctta aatcaagttt tcattttatt gttaagaaag taaaaccacg tagccagagt      7080
     gatgtgaatg agtttataaa gtaaactgtt ccctttgtgg gttcacccgg gagtttgttt      7140
     tccatatcaa acttgcaaag tctaaatata caaggagagg atgcaagact aaactgtgtg      7200
     taggctactt tatattgaga aaaaagcccc attaagagag gcgaatgtct gcagctccgc      7260
     ctccgttttc agatgtcttc gttttctccc atccacacta acacagagta acagcgtttt      7320
     aaaaccaaaa ctgcctcttc tgtgttttca aaacgctcca tttttggtgc tcaaaaacgc      7380
     ctgcgtagtg tggttggatg gcgtaatcgt agcaaaactt atacgtttta aaactaaaac      7440
     atattactgt aaactgggcc tgtattatca tcaatagcgt tacctgttta gcacaaaagt      7500
     ttgtaacata caaaaacgta aaaaacaaaa tcttacctat taaatgtttg gcctttatgc      7560
     tttgttttct gtgtttgctc attactacaa ccattcgcag ccctaaagtc cagcatcttc      7620
     agactggctt tagtctagta cagttaaatt acatttgtcc agggagctct gtacaaatgc      7680
     tgacgggagc tattgacgca tgctcagggt ccatttgcga tatctagtgt atatatatac      7740
     ctatgaacag attatacaaa cagcatcaga atgtaattgg attttttttt taattatgtc      7800
     tacatgggcg acgcagtggc gcagtgggta gcacattcgc aagaaggtca ctggttcgat      7860
     ttttggctca gttggcattt ctgtgtggag tttgcatgtt ctccctgcgt tcgcgtgggt      7920
     ttcctccggg tgctctgatt tcccccacag tccaaacaca tgcggttcag gtgaattggg      7980
     taggctaaat tgtccgtagt gtatgagtgt gtgtgtgaat gtgtgtgtga atgtttccca      8040
     gagatggttt gcggctggaa gggcatccgc tgcataaaaa cttgctggat aagttggcgg      8100
     ttcattccgc tgtggcgacc cgggaataat aaagggacta agtcaacaag aaaatgaatg      8160
     aatgatgtct acattattat acattattac agaattgcga gattaaaaga cagaaaggag      8220
     caaaggctat attgatgatc tgattcactt tcccaacaag attgatgacc agacaggttt      8280
     tcttttcata aaaccctttg tctcatctgt tcttgctgtt tgtagcgcat cagtcaaact      8340
     gactgagtca taaagacatc tgtcaatcat ctgctcattt atgacctctc gatggaacga      8400
     ttcaactcct acttgaactc tcagagtggt tctcctacat gacgagtcaa tcagctccac      8460
     tccagaggtg ggctggggga agggtcgaag tgttgtttag tcgtatgggc tcgctcgcga      8520
     cacacacatt tacagctgtg gttattaact actccgtccg ccactaaaac tttgaggctt      8580
     ggcgttttta aaggttgtcc atccttaata cgtttcctgt tccacccgca tgatcagcca      8640
     atcggaacag agcttaatga atcccctgca aggttaattt gctcagtaat ggcattaaac      8700
     gaatatatgg aaacagtttc tcctctaaat accaattcat tacatctacg cttattaaga      8760
     gcgaggacta tgaaattatg gccagcgtcg ccacattaag agtcattagc ttcacactcg      8820
     ctcgtatttg cctcagcaag gcttgtcaga gaaagcgaag aggggctgga tctccttcca      8880
     ccgaacaccc gtaattactt ctcgcagtaa ccttccatcc aaacctcata ttttgataat      8940
     tctgccccac atttgcatct tcccatccct ccgtcgcata cttagtcaag gtctgtgagt      9000
     gggccgaccc atttgagcgg gaaaatgaag tgattaacga aaagagctct tcctgactga      9060
     gaggttcgaa gaaatggatt cgcggcataa aaaagggatt taacacagga aaaaactcat      9120
     tattccaacc cactcgtttt ttgttagcgt tctttatgcg aggttgtaac atcgctctct      9180
     ctctctctct ctcagagaat tc                                               9202
//


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