spacer

EBI Dbfetch

ID   CT033795; SV 6; linear; genomic DNA; STD; VRT; 5617 BP.
XX
AC   CT033795;
XX
DT   21-OCT-2005 (Rel. 85, Created)
DT   03-JUN-2009 (Rel. 101, Last updated, Version 8)
XX
DE   Zebrafish DNA sequence from clone CH211-127A10 in linkage group 6
XX
KW   HTG.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-5617
RA   Johnson C.;
RT   ;
RL   Submitted (28-FEB-2007) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
XX
DR   MD5; ed6ab1ed50b2a7f338cb7038dc852a89.
XX
CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of
CC   a tandem repeat of more than 10kb in length where it has not been possible
CC   to anchor the base differences between repeat copies.  The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   CH211-127A10 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..5617
FT                   /organism="Danio rerio"
FT                   /chromosome="6"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-127A10"
FT                   /db_xref="taxon:7955"
XX
SQ   Sequence 5617 BP; 1683 A; 1201 C; 1203 G; 1530 T; 0 other;
     cggagcagct ctcgtaggcg ggcgccttcg gcgaggagca ggtatgaatg gcacggcggg        60
     cggagcgggc tacggaccgc cgataagaca tcacccacca actgctctct caccgccttg       120
     aattcctggg tgaattcaca gacagtgtcg ccgaacctgg ctggggatat ggggaagtca       180
     agaaagcgga ctttgtcgac tttgcgcata tcagccaggg gtggcgctcc tggaccacta       240
     atgtggacat cgtcctcccc aacgcacacg cagcggactc agtagtccga agagctaagt       300
     cggcagcggt gcgaagctcg taagcctggg ttggacccac cctcgtgcag ctcggccagc       360
     gcctgcgctt ggtagcgctg gtaggtggct atcgcatgca aggcggaagc agcctggccc       420
     gcagctatgt aagctctagc tccgagggag gtagataact tacaggcttt ggatgggaga       480
     cgaggcgaac ccgccaagaa gaggcgcctc gcggatttac cgccatcgcg cactcaacct       540
     gaggaatcgc cacatacccc ctggctgttt caccgtcaag agtggttagg gtggaggaac       600
     acgcagcacg agcagaaaaa agtgctttac aagaccgcgt gagcctactg tgcacctccg       660
     ggaagaaggg aacgcccctc tagtcggtcc ggccgcggag ctgggggata aaccatctcc       720
     aacccacggc cgaagcagcc cgggaaagca cggctaacat gtccgtttca ggatccgtag       780
     tgacagcgct caccagcccg aagggggcga gcgggtctgg atcatcggac aatgaaagcc       840
     caccctccga tgccgcggtg gacatctggt ctccggtgtc atcgggcgta agggctacca       900
     tctgttagac ggatcgcttc ccccgcccga agcttggatg gagcgcttag aggagcggga       960
     ggtccgcggg cccgtgggcg acggattatc tctcgctgaa accctcagat ctgcccgagt      1020
     gcccgctgca gagcagggga caactggggt ggttcgccct tttgcaaagg ctaacggcga      1080
     tcttgcgcaa cagtcatggc atcgcaatga cgacatgaac tgcccgcgag cagcgcatta      1140
     acatgctgga cccccagaca tgtaacgcag tgcccgcgcc catcatccga ggacaggaaa      1200
     ccaccgcatc cagaaacgca cagtcggagc gccgtcctga taaggacgtg ctgcacgact      1260
     gtgttgctct ttctgtgaag tttgcaactt tatacgcacc gctctggagg accggaccca      1320
     aagaacgcca ggcaagggag aaacccagct cgaccgtctg ccactgcgtg tacacactct      1380
     ggaccgggag aatgctctcg ttcgctcaga atcgctggtc acagcaggag gaaccctcat      1440
     cgactcgatc agaaagtctc tgaagcgaaa aggatagcgt ctgctggcgc caggtgagct      1500
     tatatactca gttgattgct tatgccgctc acctgcgcag gcttgcgctg ccaattcatt      1560
     cttaattggc ccgttcaata ctctttcaga cgagtagctt ctgaaccgaa cctcccaatg      1620
     cgtggatttt acaatcaaat ccacttatag tgctgaagtt ccccccgaag gggaactatt      1680
     gaacctacac acaggagact gaaataaatt atattttttg aagaaaatct caaatggcac      1740
     ttaaaggttt ttgcatctga actcttcatt ttctctctat atattttttt tcaattacat      1800
     tcattacaat ttatgcacaa ataataataa ataaagtgtc ttatcctata gggtttcatc      1860
     ccatagaaaa cataaatgaa caggagacaa gtcaggtttt cgagaaacaa gaattacaac      1920
     caaccaaaag atattctatt taattctgaa tacgcagaag atgcctcagc taattaaagg      1980
     aatatgaaag taaaaagctt ttctgtcatg aggtgcttta tcttggccag acagcatggt      2040
     gctttccagc gatagcaaag ggaagctaga cacataacgc acacggatag ctgcacttgg      2100
     acaatttgtg atgcccatgt ttgatagaga acgcaacaca ctgctttgca aattaatctc      2160
     aaacagcagt atggctctaa agggcaggaa tcacccaagc aactggagtt atttttagta      2220
     attataacaa gttgttatat ttaaggtaag gtgtaagctg acatttagtt taaataggtc      2280
     acataaccct taaaataaac tgctttggag ttcatgtatc tgcaagtact acaataaatg      2340
     cactgattgt tccagaagaa acacagactt tgtgtcattg agttcgtaca gtatgagata      2400
     tcaatactaa atgttatact ataggatgat gatgaatatt gttatgaatg ttaagttgtt      2460
     tgatctaaaa atagcctgaa ataggaaata taataagctg ttatggtgaa agttcatgat      2520
     tatagctgtt ctaaacatca aaatataaat attgtggaaa atatacactc ttgtattggt      2580
     caatatgaaa ctcacactcc accaatcgga aagaaatatg gtttatgaaa atgattaaag      2640
     ggaaatattg atttccaatg ccccctagtg tggtaagagg ctgatgttta atacagcaaa      2700
     gctgctcgca aacattccac cacatacaac tttaaaaacc tagttttata ttaatggcaa      2760
     aaataagaaa agaatattca tctgttagtg gctgatgcta tagctttgaa caactctgtc      2820
     tttcctgcat cctgctatga aatataccat ttgataagaa gttttcatgg gatcactata      2880
     tgtatcttaa tgtacataat gcaaactcta gtgcagaata gacactagtg cagaatagcc      2940
     atactcattc cacacaaact atgtaaacaa tatatacgct gagacagttt caagagagaa      3000
     tgagccatca ctgtcaagat aagtgtgtct gtttagggag gaggagctgc agagagccca      3060
     gtgaaggaca gataaaacat ctgctttgaa cagagagaac atttcctctt aaattacctc      3120
     cctacctgac agagaaaatg tgatatctta ctctccctaa ctcccaaaag cctgaaataa      3180
     aagcctttaa cacgctgaga acagttatga ataggaccat atgagactct tatcaagtgt      3240
     ccgattacct ttgtgctgaa aacacatcta tattctatct cctggaacat taataacaca      3300
     ccgaaacaat tatttttgta caaagttgca ggaagaacat tgtttcaaat ttaattggac      3360
     acatatgttt tatatacatg aaaacatgag tgtctattca tttagtgatt tcccgtttta      3420
     agaattattc tcattataat acatgtgaag caatcactat atgagtgata tgatgtaact      3480
     gaagacacat cagtggccat aaggacaaag agtatcaaaa tactactctg gtttcccatg      3540
     aagcagttat agaagtcata aaatattcag ctggtaaatt acttagaagt tgtaagactt      3600
     ggtaaacaaa gcgctgcaag ctttattgtt gtggttacat aattaagaga tcttaatcaa      3660
     acataacaca atcaaacgcc attgtggctg ttgaaagcat atagaggttc aaaagaccct      3720
     ggtgggtctt attttccaca taatgtgatt tatggattgc ttcttaaagt tcaactgtgt      3780
     aggcctattt attatttcca gagtgataca aaaagtgttg ggaaattcac tattggtggt      3840
     gatattacac catgtacgag taaaaaaaaa aacagacttg tttttagaac acaagtgttt      3900
     taaaaaagaa aacagttttt atgtttgcct tttacttatc ttggccatct gcatccttta      3960
     gctacactga cactagaact taaagttttt gtaaaattat cagacaataa gtattcataa      4020
     caacttatca tttcaactag atattaacat atctaatatc ctagaatgaa cacaatacac      4080
     atcaacagca aacaagcctc ttcaggagaa ggataaaatc caacttatct catacagcac      4140
     gtgcttttat gcactgatca catgcaattc ggtggaactg aaacaataca aaataacagc      4200
     aaacacaaaa tgtaaagaaa aagtgctgat atgaacagag tcttacctgc aaatgcccct      4260
     ggtacatatt tagtggagaa taaaaaaggt cccagatcac agttagatga acacaagaaa      4320
     tatgaggaga cttctactgt tcatgcgcgc aagagagttc tgaaagtact gaaagtccag      4380
     tttggggagt cgtcgcactg gagctgtctc gtggactaag tgctgaattt gctttcgtca      4440
     ccgacgcact ttatagggtg aggaggcttg agtgcagccg ctccgagctt cacgcgcgcc      4500
     ggcgagtctc ttcaccaact tgctgaggcg cgcgacggat gcgctgaacg ctcgagaatc      4560
     ttgcctacgt cataatcaaa gcctcattgt ggctctgagg ggtttttatc gtagttggtc      4620
     tgattcttca gcaattcctc cctcctttat cagtctctct ctctctctct ctctctctct      4680
     ctctctctct ctctctctct ctctatctct ccttaccgac tgtctcctcc tctctccagc      4740
     caagagaatt taggcggagt cggttccgtc attcacggga gagtcgctgc acgcgcagat      4800
     gctcagtcta ggtgttctcg tggttatttt gttcaaccag acactaaatc aggtgaatgt      4860
     ctcgattttt ctcttcgtgt gctgttcttc tttgcctcgg agcaaggagg cgccacttcc      4920
     atttgtttta ttacataata gtgtgttgat gggaagaaat acttattata aacaagctta      4980
     ttaacaacat gcctattaat aaatgcttgt ttctaatgtt tgttttaaaa tgataaaatg      5040
     catttctggc ttacatcatt aatgcaaaaa ggaaaataat gttttcacaa tataaaactg      5100
     tgtactggaa ataatcagct aaacttacaa tgtttttatt gtactgtatt atgtgctaat      5160
     gaatgatatc acaggacaaa tgtcagttct attagtaaac atgtagtata taagccataa      5220
     aattataaaa ctcctatata aagtatgaat ctcttctaca gaatagagca gctcctttat      5280
     tgtcagtgaa aaatatgccc tctgttcagt taataaagaa tggtgattag attaatgaaa      5340
     tatgtataag agtgggcaag aatagatttc ttcatttatt taaataaatt gtcagcagca      5400
     ggattttttt acaacactct gagtatgata aatgtgatcc ctagctgtta aaaaaagtaa      5460
     gacccggtta tatttttttc cattccagag cctttacata tacagtactg ctataatata      5520
     gtacaactga atctattgag aggtttcatg ggttgggtga gtattgtgct cttgatcagt      5580
     ctgcagctgt ctaagagggg gttttttttc tgtcaac                               5617
//


spacer
spacer