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EBI Dbfetch

ID   CT027775; SV 5; linear; genomic DNA; STD; VRT; 7656 BP.
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AC   CT027775;
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DT   26-SEP-2005 (Rel. 85, Created)
DT   05-MAR-2015 (Rel. 124, Last updated, Version 7)
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DE   Zebrafish DNA sequence from clone CH211-9P5 in linkage group 15
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-7656
RA   Almeida J.;
RT   ;
RL   Submitted (23-JUN-2006) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
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DR   MD5; fe08efd9fd77ef07453a53746d85c07d.
DR   ENA-CON; CT993378.
DR   BioSample; SAMEA3146246.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of
CC   a tandem repeat of more than 10kb in length where it has not been possible
CC   to anchor the base differences between repeat copies.  The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   CH211-9P5 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
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FH   Key             Location/Qualifiers
FH
FT   source          1..7656
FT                   /organism="Danio rerio"
FT                   /chromosome="15"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-9P5"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 7656 BP; 2615 A; 1422 C; 1328 G; 2291 T; 0 other;
     aacgactctt cttagattct tcttacatat ttagaaagtg ccttcgaaat catcaatttg        60
     ccaaactgca ggtggttatt tgaataatat ccctatttaa cattcaataa ttcatgcaaa       120
     gggttaaaag aacaacattt cgttctgcaa catttgtgct agcctaccac tagtactatt       180
     gcaacactca aatcaataca gcaaacaatg ttctaaaatc cagattttgt tgagcaacga       240
     cctaaaaaac atgtttgcat ccagtgttgc ctgaggcaat gtcaacagac aggtgtgtga       300
     gttagtcctg taggctaacg gtaagtggtt gtgtgagtgt atgtggatat ttactcagag       360
     atatgagctg agaagagctg gtggagttct ggcacggcag tcggtgcagt gtctgccacc       420
     agccggccgc ccctcctctc gcctgccctg atcaatgggg actgtttgga ttagcactaa       480
     aaactctaac tgcagtgatt agaaaacaca ttagtgttga tcaattagga ggcaaacgct       540
     tctcttaata attgatgggg taaagcaatt tacacacagt cagttagtgg gcttgtcaga       600
     gcattctccg aagggcccaa caaacacagg cgccatgagg tattgacgct gccgcttggc       660
     ctgaatgcct gattaagctc tccggggcct tggcagacag gcacacacat acagcaacgc       720
     tcactccatt aagtgagaac tagaggagac cctacttaag ctgtgctatc cacttacccc       780
     aaacaccagt tcacaacggc agaggtctga aaacagagcc ctggggcacc ccgctcacgc       840
     agacttgtgg ctggcacaat gacatctctc ttttggtcac attgcgctca tttacacagt       900
     ctgtgccttg caagaattca attttgcaaa aggcgccctc ccccttcttt tgtgattgtg       960
     ttacaggatt gatgggagat ggccccctgg cccccagacg gccgcactca gagccactca      1020
     gcacagggac cgtgtgtcag agcggaggag atggttataa atcacagccc cgtctgcaga      1080
     cggcctgtct gcgtatcaag gcttttttaa ccttgttttc ctccctgcta acctttgctg      1140
     tgctcctttt gatgtatacc gccattaagg ctaatggcac ttctctcacg taagccgtta      1200
     gcgctcgtta ggcggtgatc agcccggcgg ccggggaata cagatgtggg cttaataaat      1260
     caattaagca accagaagag gagactggaa ccatatgaaa ggttaagcac caaggttctg      1320
     gcaccactaa atgaactcta gtgggtctct gaatcactga ggactacgcc gagaccgctc      1380
     tgggatgcta tatggtgaac aaagtgagtg gaacagcaca cattatgagc ttcatttaga      1440
     gcacagaaaa caggaaggaa agcacaactg aaaataccca taagtgcacc atcattgcaa      1500
     gagtcagcta atacttagca tggggtaaag ctgtatggtt tgatttctta gaaaaagact      1560
     ttttaatgaa tatgacacac attgagagat ttaaagatca ctgggccaat gatttcggga      1620
     aataattctt gatgatttta aatgttctgt aagctctagt ttaaaaaatg ccattcaaag      1680
     tttggccaga gtaaatgtta aaacaaatga accatttcct caacatgttt acagattttt      1740
     atactcagtg gggttccaaa gctctacatg caccaacatt tataaatatc aaatattacc      1800
     aaagtatagc tggctttaat atttatacaa agaaaaggaa tgatgctaac tggaacaaga      1860
     agtctctcag caagaaacaa ttggaataaa tcaagccgca agtgtgaata aaacatctgt      1920
     tggtaaatgt gttcaaaaat gtgtcaaatt ggccccaaat gtatttagat tctaaagcca      1980
     cgataaaatc gcatgaattc atctttgtta catttttttt ttttttacca aagtgacatc      2040
     tgcaaacaaa taaagccata tttagaccag tggttctcaa ttgctgtcct tgggcccacc      2100
     cctagcccag cacattttat atggttgcgt ccaaaattgc atactttcat actatatagt      2160
     acgctaaaaa ctagtatgca agctgagaag catgtccaaa ttcatagaat tcgaaaaaca      2220
     gtgtgcgaga agtgcccaga taacctgcta ctattgcatg gtttacgggt actatggtag      2280
     tattgcaata ctatggttct aaaatactgg tggtgccact gtagttcgct agtatcgtca      2340
     ttaacggtct atctacaata ggtaatattg catgtggaac gtcactaaaa tgctcacacg      2400
     tttgagtaac aatataccat tttattttaa aaggcaatag atccatttaa ggttgcacgc      2460
     tttctgatgt ttcaaacggt tcatttcttt tcctgtctat acgatttaaa tcaaaaagaa      2520
     cgccgttcaa agtaaaattt tgaattactt tggattgata cctgataaga caaaaacaat      2580
     aaatgaataa aaaaaacatt aaatgaaaaa cccaaaatag tggaaacaat aaaacttttt      2640
     tttaccactt catatagcct aattttgtag ggaaaattct ctttttgtaa taaatttcat      2700
     tctgtataat ttttatcttt attttttttt attttttgtt ggtgagttat ctacaaaata      2760
     aacaaaaata gctcatacat tttaggtgaa gtgacatgca aataaaactt ttttcaataa      2820
     taaggcaatt attaattgta ttccagtaga cctattataa catctaaaat acagtatttc      2880
     tgaccatttt ctttataatt tgaatagtat cgcaatacta tttggtattg tgatacttca      2940
     gctggtatag tatagcaaaa taactaaggg tagactaatg gtatagtaac aaccctacct      3000
     actacttcca gcaaaattct gaagtgcgca tccgatggat gctacggtat cccatgatgc      3060
     acagtgagag aattcatgaa tgagagtgca tgctgacgct agtaggtcat gtgatgatga      3120
     cacaatggcg gatatagtac gtccaaatta cattcatact actcacattc acactgtata      3180
     gaacatactt ttctgacagt tgagtagtaa attcaaactc aaatgcagta ccgatttcag      3240
     atgcagccta tgtcttcctt acttaacaca cctggtttaa aagatcagct cattaataga      3300
     gagatccatg aactgatctt tgcatgtcaa ataaaagaga catacaaaat atgcagggtg      3360
     ggagaactgg aaccccacaa aaactggaat taagaaccac tgctttagac aacacaggtt      3420
     ttatttttta gcctcagtct atctttatct atctatttgt gacttaaaat tgcagatgaa      3480
     gagtttagat gcaaaaactt tgaaatgcca tctgaaattc tcctcttaca tgagcatttt      3540
     ttttcaggct cctatgtgtg tgttaagtga tatcactttt atggcataga ataagtcctt      3600
     ttcgagtctt taaagtgaaa atatctcaac ataaacaaag gaggctgaga aaaatgttca      3660
     tttttgatgg aaatttcaga cagcatataa aagtttttgc atctgaactc ttcaaatgct      3720
     ttttgaggcc actgtactat gtgtgaaaac tggcggaggt gaaagtgcag ggggaactca      3780
     ctttggcagc actgatgaca gtggcagtgt aggactgggc attatctcca catgccccac      3840
     cacgggactg atgacaccgg atcagctaca cacacacaca cacaaacaga gacagaacag      3900
     agtcacatta tcatccagaa cctttcagct ccccagcact cattaaccca cagaggcctg      3960
     tcacagcccg cgccaggacg tctgcaggcg ggcacggtga gtaagaagag gaggaggatg      4020
     ccattaggac aacaaacagt tcttcagccc tattctacaa catgctccct ctagggtctc      4080
     tgtcccagac ctattcaaca cttcagctgc tattggccag aaactcatta cctttgccca      4140
     gacacactgt cccatctgtc cattattagg cagcaactgg cctctctaag gcaaacaaac      4200
     cgcacccatt atatgaatga cggtgaatca agggtccact taataataat atgtcttatt      4260
     atagtgttag ctcctcaaaa tgacacactt tgtctttatt atatgagcaa ttggtacaaa      4320
     agtaataaca ttaattaggt gactgcagtc tgatttaagg ctgagtaaaa gaacacattt      4380
     ttatattaca aaaaagtcta aaggaagcct tgaattatta gtttgatgct gatcagaagg      4440
     gcagagggtt ctaatgctaa aaaatttaac ttgactaaac taaatgagtt aattgaaaaa      4500
     agtgctttat atttaattca aattaccata tgttacaaaa tactccttat aaaataatat      4560
     aattttatat acaaacataa aacaaaaata tattacattt aaaatgattt aaaaagtaca      4620
     atttgtagtt attattaata aaataataaa ttaaaacaaa aataataaca atataaaaca      4680
     aatctttaga tatcatctga catttaataa aagaagtttt aaacaataaa gtaaataaac      4740
     accaaaaaat gtatagtaaa taattttttt aaaaatagtt cttgctattc cagaaaacct      4800
     tttattactg tattattata aaatattatt ttagtctcaa tttaacaaat aactaactag      4860
     ctaactgcat aaataaataa ataaatagta gtttggaaaa gtcaaggttt taaaattggc      4920
     ataccgtttc taaggtatgt gtaaaaacat ttgtcacttt attttttatt tttttaggac      4980
     aacagtaatt ccagcagaat aaatatccaa atatgctatt ttaaactgta aataaatctg      5040
     tttttgaaac aaatgaagac agcatatgtc aatgacttat ttaattattt agtctgacat      5100
     atttattgct tcaaaatact ttaaatattt cttaaaataa aatatatttt gttcaaaggg      5160
     ggaaaagttt tagttgtttt acccagacat tgaaaaagaa gatattttaa agcagtaatc      5220
     acaatactgt gaaactgtga tatcatactg tcaaaatctt ataccgaccc ttataccaaa      5280
     atcttatacc gaccatgcct aaatatatag atatatacat acacacacac acacacacac      5340
     acacacacac acacacacac acacacacat atatatatat atatacacat atatacacat      5400
     atacacatac atacatacat acatacatac atacatacat atacacatat aaacacacat      5460
     atacatacat gcatacatgt atacacacac acacacacac acacacacac acacacacac      5520
     acacacacac acacacacgt acatacagtt gaagtcagaa cgctcttaaa tttgggattt      5580
     tttttttttt tttttaaaat caaacgaggg gtaataaatc tgacttaaac tgcatgaata      5640
     aataaaaact acaatacatt taattaaatt aaataaacca ttaaatttac taaactagtg      5700
     gtttttgggt tttcaaaaaa agaccctttt gcatgcatct ggagttgttt aaaatactag      5760
     gtgtttgcac taccttgttc tcagcatagg ccaaccaccg gcttcccagt gctatagggt      5820
     tgaagttggg cccaggacag gggtagcagc ctgcaagcac aaagaaaaca cacaaatata      5880
     acacaagata aactaaatga cagcacaaag aagacataaa taatccatca gagcaccatc      5940
     ttgcccaaaa ctgtgtttta ttagagctta gcgttagact aataccagag gttaaacaag      6000
     ggttatggca ttttgtgaca gtaggacggc tcctctgctt attaactgcc agacagattg      6060
     acccatgaga gcaatacagc catagaatcc cacatgccat aataatacag acgtacatca      6120
     catttgaacg cacacaaaca ggacagacac gcaagcgaat gcaaatcaga taaggtcata      6180
     aacctaataa ataatcacag aaataccaaa cttctttctc aacccgcaca cactgaaagg      6240
     ttacactagt gcacatcaca gtgtgaagtg tgctgacagt aatttatagc acgagtgaat      6300
     ataaaatata tgtagacagt aatttagggt gtagagtcag gatctgaaac tggggtgaat      6360
     ggagcttgag gtaagccaca aaagcagtga tgcaaaaaaa agcttttgtg tctttccaag      6420
     gcggagggag ccaatgctgt gagataacgt atgtttaaca catcctgtga gctcggttta      6480
     ggggattttc gacattgttt tgcgatctca caaccagaga gagaaaacct tactctatgc      6540
     gaacaaacag gctggtggga cacatgctgt atgaattaaa ttgaaatgaa tttgtattgt      6600
     tcactgtcta gaggccatgt tattttagca tcagtgacat gctattttat attttatttt      6660
     gatattttcg ctttttatat tacttaaggc atcactgtag cacactgggt agcacgatcg      6720
     taagaagcaa ttagatcact agtgtaaacc ctggctgggt cagtagggat ttctgtgtgg      6780
     agttcgcatg ttctccctgt gttcacgtgg gtttccttcg ggtgctccgg tttcccccca      6840
     cagtccaaag acatgggcta taggtgaatt gtataagcta aattggctgc agtgtatgta      6900
     tgtagatgct gtgctttcgt tgtagtgctg cgttgcagct gtaagggcat tcgctctgta      6960
     aaacatatgc tggataattt ggcggttcat tccactgtgg tgatccctga ttaataaaga      7020
     gactaagcca aaaagaaaat aaatgtaaaa ataaatgttt agtaaaaatt ttgttgaatg      7080
     tcgattttaa tgattgatta ttttagtgtt attgtgcgtt ttttttttaa agtaatagta      7140
     attttgcttt tgtcatatag cttgtcatat atattttgtc atatatgtat atatatatat      7200
     atgtatatat atatatatat atatatatat atatatatat atatatatat atacacacac      7260
     acatatatac acacatatat atatatatat atacatatat acacacatat atatatatat      7320
     atatatatat atatatatat atatatatat atatatatat atatatatat atatatatat      7380
     atatatatat gtatgtatgt atgtatgtat gtatgtatgt atgatactct gtctctccat      7440
     gttagaatac atctaccatt aaaagtacat aatgatcagg cctttatttg tgggcaaacc      7500
     aacaaaagca gcaaaggatc aaatactttt tactctcact gtatatatat atatatatat      7560
     atatatatat atatatgtat gtatgtatgt atgtatatac acacacacac acacatatat      7620
     acacacacac acatatatat atatatgaat gaattc                                7656
//


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