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EBI Dbfetch

ID   CT027651; SV 10; linear; genomic DNA; STD; VRT; 3994 BP.
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AC   CT027651;
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DT   21-SEP-2005 (Rel. 85, Created)
DT   13-JAN-2009 (Rel. 99, Last updated, Version 15)
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DE   Zebrafish DNA sequence from clone CH211-227N17 in linkage group 18
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-3994
RA   Heath P.;
RT   ;
RL   Submitted (12-JAN-2009) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
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DR   MD5; 5a90c9411b194c91d7cbec4c2385332b.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of
CC   a tandem repeat of more than 10kb in length where it has not been possible
CC   to anchor the base differences between repeat copies.  The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   IMPORTANT: This sequence is not the entire insert of clone CH211-227N17. It
CC   may be shorter because we sequence overlapping sections only once, except
CC   for a short overlap.
CC   
CC   During sequence assembly data is compared from overlapping clones. Where
CC   differences are found these are annotated as variations together with a
CC   note of the overlapping clone name. Note that the variation annotation may
CC   not be found in the sequence submission corresponding to the overlapping
CC   clone, as we submit sequences with only a small overlap.
CC   
CC   The true left end of clone CH211-163B1 is at 1995 in this sequence.
CC   The true right end of clone CH211-265B3 is at 2000 in this sequence.
CC   
CC   CH211-227N17 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
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FH   Key             Location/Qualifiers
FH
FT   source          1..3994
FT                   /organism="Danio rerio"
FT                   /chromosome="18"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-227N17"
FT                   /db_xref="taxon:7955"
FT   misc_feature    1995
FT                   /note="Clone_left_end: CH211-163B1"
FT   misc_feature    2000
FT                   /note="Clone_right_end: CH211-265B3"
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SQ   Sequence 3994 BP; 1241 A; 724 C; 776 G; 1253 T; 0 other;
     ttatatccct ggcattgtct gacactggcg cacacacatt aaaaaagccg tgccaggtac        60
     gaaagcttga caggcctagc aacagtaact aaggagggca gggcttttgg aataatatga       120
     aagggcccat tggcataata tgacactaca agaatacgtt tgtgtgcaca aaaaaaacga       180
     ctttattcac agcaacttct cctcagtgtc agtataatgt gcatgtgatg catgaagagt       240
     gatgtgctcc ttagtcgtgt tgtgcttgct tggtcgtgtc tctgacacat actttagatg       300
     tacctgtgct attttcacac agaggaagtc gagcacggtg atccggggta tagaacagtg       360
     cacagtgctt atgaaagtgc accctatact gaaactgtga aaaaataatc agattgaacc       420
     acttaagaca tttgatctgt ttttaaaatg ttttggggta tctttctttg aaagagtcag       480
     gattattgct ttctatagaa gatcagagag ctctcagatt tcatccaaaa aatcttcatt       540
     tgttttctga agataaacga agatctctgt gatttggaac gacacgagga tgtttactga       600
     cagacttttt tttcgggtaa acatttcaag ctctaatttc tacaaaaaat ttaaataaag       660
     ctcctcgctt ctcgcaaccc cgtcccaacc ccccatcagt gttttttgtt atctcatgtt       720
     cattagtcat gtttattgca ttattttagt tttatttgtg ttacaatgat ggtgttaaga       780
     agttgtgtga atgacactga gcagcttctg tatactaaca taatattagt atgcaaaatt       840
     ttacagttat ttttatagta tatatatatt tatatatatt atagtatata agtatagtat       900
     atattataaa tatatatata tatagtatat atatatttat aatataattt tatattattt       960
     tttatacatc aaagctttat tttttatttt tccccagaat aaagcccttc agacttacac      1020
     accatctgat aagcctgtca ggctttattt tgcatttaat ctttattgaa tgcaagattt      1080
     tgtgactgaa aaccaaagca ttcacatctc atcagcaatg tcctggccat tcatcaactc      1140
     cgacagtttg tgcttgattt aggtaagaga tcttctgggc cactcgccct ctgtgcagat      1200
     gttgcacggt cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca      1260
     cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca      1320
     ctataagtct gcttgcatta atcagaggct tcctgattga tcgggggagg atgagctgtt      1380
     tgatcacatc ccgcccttca cttcacccgc tctccttcct cttccagcgc ttctggcagc      1440
     tgttcagatc tgacacagta gcactttagg gaggaccagg tgatgtttta tgaatcttca      1500
     gaagagtaca gggggaaaga ggcataaagt tcactcggat caggccctga ctatcctaat      1560
     cttttgtttc aaagctaata ttgtcgtttt atacaacaat caatttagat tttctttcaa      1620
     tttagattct aagtaatctg atcatataaa taaaataaaa aactgacgaa ataaaatcaa      1680
     aaggttacaa atagttcatg ataaactgtg actcttttgc cacagggtaa aactggtaac      1740
     agtaaaactg gtatctggta acagtatcca gatattgtta catcagcagc tctttcctca      1800
     ctcagcaaca aatgtgccat gatagataat agcccttaaa atccttctcc gcattcactc      1860
     attaaactca ggaagacaaa aggtaattta tcactcagga aatcctgata ttgcccattc      1920
     cagctccaag caaaactagc acacgctccc ttattaaaac tctgcccaag gggctgaatc      1980
     tagtttactt tctggaattc tccttctctt cacacagatt gctagagaga agaaatgcat      2040
     atgagcattt ctgtccggct ctctgtctgt gatacattca tcacaagcga atcaagggtg      2100
     aatctgatgt gttggggaag atacaatgaa atgtgggaaa acatggatga ggcgactgat      2160
     ggaaacggaa atagtttaaa caagagatat agagggattt atatggaaag aggctggata      2220
     ttagattgaa actgttgtaa aataacaaat aggggattta acaaaaaata ggcttgcata      2280
     ttaaaaattc tgagcaactt cgaaaaaaga tatacacttt catagcattc cagcttgtga      2340
     aatgtgtatt tttgcagcaa atatgacctt tatcagaggc aaatggctag taattttttg      2400
     tataaaactt gcttaccgtg caaaagttta ggttttcatt aaatgatttt gtaaacagac      2460
     caacccacag actacttgaa tctgttttgt catagaaaaa ctttatagaa aatgtacaaa      2520
     taaaaagcat tactaaattc atgagccatt gttttatttt ataggaatgt tatgttcata      2580
     aaatgtactc tttgacgtgc tacattatac atattggcat tggttttgag ttagttacac      2640
     atgttttatc tgttggatag ttatttattt gtttgcttgt tgcattctgc ctccagaatc      2700
     taaagcttag atataaatat tagtgggcga cgcggtggcg cagaaggtag tactgttgtc      2760
     tcagagcaag aaggtcactg gtttgagcct cagctgggtc agtttgcgtt tctgtgtgga      2820
     gtttgcatgt tctccctacg ttcgcgtggg tttcctccgg gtgttcaggt ttcccccaca      2880
     gtcctaaaga catgtggtac aggtgaattt ggtaggctaa attgttcata gtgcattaat      2940
     gtgaatgagt ggatgtgtgg atgtttccca gagatgggtt gcaactggaa gggcatccgc      3000
     tgcgtaaaaa catgctggat aagttagcgg ttcattctgc tgtggtgacc ccggattaat      3060
     aaagggacta agccaaaaag aaaatggatg aacgaataaa tattagtatg tttatatcat      3120
     cgttgtcaca ttttttaatg aataaaaaca tcacaacaag taaacaacaa gccataaaaa      3180
     tagtgttgaa tcatgttgaa atggacatta tgaaagcaat caattaaaaa aatatataca      3240
     ttttataaaa gtatttttaa aaaatactgt atacatgtaa cattacattt ttaccagagc      3300
     aaatagccac tatttgttat acattcatag tatcatacta tatgtagggc tgctacatat      3360
     actatagtat tttatatata tacaatgctc acaaatgcca tttttaaaat taatattttt      3420
     tttcaatatt ctcttgattt aagctctttt ttattgttat ataatatttt tccctgtatt      3480
     atggggcgac gcagtggcgc agtaggtagt gctgtcgcct cacaggaaaa gggtcgctgg      3540
     tttctgtgtg gagtttgcat gttctccctg cgttcgcgtg ggtttcctcc gggtgctctg      3600
     gtttccccaa cagtccaaag acatgcggta caggtgaatt gggtaagcta aattgtccgt      3660
     aatttatgag tgtgaaagat tgagtatgga tgtttcccag ggatgggttg cagctggaag      3720
     ggcattgaaa gtcaccattg attagacaaa agcagcttca gctgtgtgtc taatcaattg      3780
     tgacttggag gaggtgaaaa gcaagacaag acaaggcaaa gcaagacaaa ggaaacgtgt      3840
     tgtaatgtca ctatacagct aacaagactc agcaacattg tatgtgtttg tgctgcttat      3900
     gtagttcagt gattagtcca aaagcagctt cagttgtgag tgtctaatca atggtgactt      3960
     ggagcaggtg agtgtgtgtt gcatgactgg gatc                                  3994
//


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