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EBI Dbfetch

ID   CR936840; SV 4; linear; genomic DNA; STD; VRT; 7197 BP.
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AC   CR936840;
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DT   24-FEB-2005 (Rel. 82, Created)
DT   07-MAR-2006 (Rel. 87, Last updated, Version 5)
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DE   Zebrafish DNA sequence from clone DKEY-91O21 in linkage group 1
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-7197
RA   Holt K.;
RT   ;
RL   Submitted (07-MAR-2006) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
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DR   MD5; e89303f6ddaf7ed3eaf70cb38b035873.
DR   ENA-CON; CT991214.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of
CC   a tandem repeat of more than 10kb in length where it has not been possible
CC   to anchor the base differences between repeat copies.  The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   DKEY-91O21 is from a Zebrafish BAC library
CC   VECTOR: pIndigoBAC-5
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FH   Key             Location/Qualifiers
FH
FT   source          1..7197
FT                   /organism="Danio rerio"
FT                   /chromosome="1"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="DanioKey"
FT                   /clone="DKEY-91O21"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 7197 BP; 2043 A; 1570 C; 1450 G; 2134 T; 0 other;
     aagcttctgt gattagaact aaagttgtgc caagctgaag tgattttcag tgatcttcag        60
     tttcatgctt gcttaatcaa ccgatgtgaa cttttgtgaa caatgtgaaa ttttgattgt       120
     ctgtgcaaaa tacactaatt gttctgtaag ctattcttag cttgttttgt ctgtgtgggc       180
     tgaatactgc atgctatttc ccaaatgaat catttgagtg aatgaatgac tcattaagga       240
     cttgcttcca ccaagtgacc tttttaaaat tgatttatcc ttgtcacaca atacaacatc       300
     ctactccata acacttctat aatttataat tatagaatac aattacaaaa cattactgag       360
     atttttaaga tgtgtcaata tcacactgca ttatatctga ccctccctta tatcacactc       420
     ccttatatct ggtgttcgtg ttacaatgtt attcttaaaa tatgacaaca atgccagggg       480
     aagatacaaa acaaaaatac atttatgact actggtctac aataatattt ctattttaac       540
     aacaatgttt gacctaacat tgactttgtc tctcgcttaa aaaaagtctt attaaatcta       600
     tctagaatag cactataatt caagccattc acataaaaat aaaaaaacat ccctgtgtgg       660
     gtttttagat tttatgagat atatatttgt atcaagcaaa acctggaaag tattcaggta       720
     catcacttca tggtggtagg cactgtaggt tgcagtgtca aacatacaac ccaaagagat       780
     atcttgatat ataaaataat aaataacata acaataccta aacatttcct tgaaattgaa       840
     atagattgta tttgctacaa atactttatc tcaaatgcaa aatacaactt aggatgacaa       900
     gttaaagatt gtgtaataca atatttgcta taaaattttt ccctatcgcc cacccctaga       960
     tggacagaaa tgatgattca ctcattaaga cggagactag ttgcaaccta atgttttagt      1020
     gataaatgta atttaggttt accagtcatt atacctgaac atgaaacact ttttgatcaa      1080
     tataacactc aaaacacctt atttattttt tacccaggtg tctgtttaag acagtcgaaa      1140
     acaccttcca tccatttatc tatctgtctc cactggacaa aatatctgtt aattaacagt      1200
     ttcccacact ttgagattta agtgtgtttt ccataacctt tttaaacagc attatcgggc      1260
     cttgagctct gttgaaaagt ttaagaaatt gacttttatt gatattttag tagacataca      1320
     gaaaaatatc catgtatctg catccaaata tgccaaattt ccatgaccaa cccagacaac      1380
     taaaaagaaa aagatgttta ttcaagtgtc tagtatagtg ctttgacatt taaaaattag      1440
     gcaaactcaa tccactttct aatgtacttc actaaaacgt aatttaggtt cttaatacac      1500
     ttaatattgc atttacgtat acttgacata cttaaaatta taattacata ttctgactag      1560
     tacaagaggt tgttcattgc ttttactctt ttgattgagt agcctattaa atgttttcat      1620
     tttcacatat tactacataa ttaccaggac tttgacatta acacccgcag gtagatttca      1680
     actgtagcgg tttggacagc cattccaact agccattttg gcctaagatt tttagttagc      1740
     ttaacaatag gatttaacaa taaggatatc acaatgcagg agaaaagaaa gcaggctaat      1800
     actgaaagag aggatggtct cgcacaccgt gagacacagg cgatcctcac tcactgacaa      1860
     ttgcttcagt gttgcgtgct tcacatcacc tgtgtgtgtt taaaaagctc agtttcctaa      1920
     aaagcaacct ccctgtaaac gcaactggtg caattggttc ccctccggat ggggaacttc      1980
     aatgctatca gtgaatttac ttaattcacg aatgggggat tttgtttcag aaagccaatc      2040
     gtctgaaaga gtatacaatg ggccaatgaa tgccaatgaa ttggcagcgt aagcttgcgc      2100
     acatgtgcct tattgccaat tatctccgca aataagcaca ggtgaagcaa ggacacgcca      2160
     tccttttcac ttcagagact tcacaagcct tctgagagag tcgatgaggg ttcctcctgc      2220
     tattatcagc gagaattctc ccagtccaga gtgtgtacac gcggtggcag ttggtcgaac      2280
     tggcattctc ccttgcctgg cgttctttgg gtccggtcct ccagagcggt gcgtataagt      2340
     tgcttatttc ctaaaagagc aacacagtcg tgcagcacgt cgttttcagg atggcgctcc      2400
     gactgtgcgt ttctggatgc ggtggtttcc tgtctccgga tgatgggcac gatcactgcg      2460
     ttgcatgctt gggggtccaa catgttaatg tggtgctcgc gggcagttca tgtcgtcact      2520
     gcaatgccat gactgttgca cagttaagat cgcggatagc ccttgtaaag gggcgaacca      2580
     ccccagctgt cccctgcact gcagcgggca ctcgggcaga tctgagggtt tcagctggag      2640
     ataatccgcc gcccacgagc ccgcggacct cccgttcctc caagggctcc atccaagctt      2700
     cgggcggggg aagcgatctg tctaaccaaa tggtagccct tacgctcgat gacacccgag      2760
     accagacgtc caccgcggca tcggagggtg ggctttcatt gtccgatgat gaaccagacc      2820
     cgctcacccc ctccgggcag gtgagcgctg tcaagacgga tcctgaaacg gacatgttag      2880
     ccgtgctttc ccgggctgct ttggccgtgg ggttggaaat ggtttatccc ccagctccgc      2940
     ggccggaccg actatatggg tgctacgtag aggaccagag ggcgaagcct tcgaagcctc      3000
     tcgttccctt cttcccggag gtgcacagta ggctcaagca gtcttggagg gcacctttct      3060
     ctgcccgtgc tgcgcgttcc tccgccctaa ccactcttga cggcggagcg gccagggggt      3120
     atgaagtgat tccgccggtt gagtgcacca ttgcggtcaa tctttgtcgg cgtggcgcct      3180
     cttcttggcg gggtccgcct cgtctcccgt ccaaagcctg taggttatct gcctccctca      3240
     gagccagagc ttacaaggct gtgggccagg ctgcttccgt cttgcacgcg atggccacct      3300
     accagcgcaa ccaagcgcag atgctggcca agctgcacga gggtgggtcc aacccaggct      3360
     tgttatagga gcttcgcacc gcaaccgact atgctcttcg gaccactaag tctgctgcgt      3420
     gtgcattggg gaggacgatg tccacactag tggtccggga gcgccacctc tggctaaacc      3480
     tggctgatat gcgcaaagtc gacaaagttc gctttcttga ctcccccata tcccaggctg      3540
     gcctgttcgg caacaccgtc tgtgaattca cccaggagtt caaggcggtg agagagcagt      3600
     cggatgcgat gggtaatgtc atctatcggc gggaccgtaa gcccgctccg cccgccaaac      3660
     catccacatc tgctgctcct cgccgagggc gtctgcctac gagtgctgcc cggcccccgc      3720
     ctgcgcctcc ggcgaagcgg gcgcatcgag caccttggaa gcaggcagcc ccccctgccc      3780
     agggtgccgt taagtccggt aacggaccgc gaagtgtccc tgagacaggt catccggaca      3840
     agagaaaatt tgctctttcc ccgctggaag gcagggcccc aattccaaca gtaattttca      3900
     gtgcactgac tcagcgctga ctcagcggag gagtcacttg ctaggcgatc ccatatgctt      3960
     attcagccac ggtgcaatcc cccctcacga gcagacccgt gtcttccctc tccgctaacc      4020
     atcttattat atgcgtactt cccctttcag gggtagtcca tatgtatttt ttgccatcat      4080
     gtcttcctca ttgggtagca gatggcctcc gcagcgtcct ccctatcagg actgcaagct      4140
     ttcccaacct actgtcgtat tttcctagaa ttatctagat gctcacgact tcccaaaaaa      4200
     tatatctaat ccataaaact tctttgaagt gggataagta agagccaggg atcacgttgg      4260
     aggaccgcac ctctttttga tgcaggagcg ctcacgctat gcctggctat cctctcatcg      4320
     aggcgaaggt aaggtgcagt cattatggcg ttttccagag atttccccat tcgtgaatta      4380
     aagttcccca tccgaagggg aacgctctgg ttactaaagt aaccctcgga aatgctattt      4440
     aacatcgcca tattgactgt tccttacctg tagttcagtc tcttaaaagg atggcgtgtc      4500
     cttgcttcac ctgtgcttat ttgcggagat aattggcaat aaggcacacg tgcgcaagct      4560
     tacgctgcca attcattggc attcattggc ccgttgtata ctctttcaga cgagtggctt      4620
     tctgaaatga aatcccccat tcgtgaatta agtaaattca ctgatagcat ttctgttccc      4680
     cgagggttac tttagtaacc agagcgttgt ctttgacgct ttcctttata gttaactggt      4740
     gatctgggac ctttagcccg gatagattac tgtgtcataa caatgttaaa tgtatttttt      4800
     aggatttttt taaataaaaa gtgtacatat acagctatat ttcacttatt ttaacacatt      4860
     ctttaacatt tgtggctaag aaataatcat ttatttattt ttggtgtggc caaagaaaaa      4920
     aaatggttaa ttccttagta atgagtaggc acacacaaaa tctgcgcaca cagaattccg      4980
     caaatttctg cagattttta gcccatcatt aattctgttt atttacttgt gtacatgtgt      5040
     gtaaatttat aaatatattt attcagtttt taaaataatt tcagtataat tattgactaa      5100
     catgaaaatg ttcaaatgat ttatttacaa gttagtattt tctgtctttt tgtaacgagg      5160
     agacacggag ggatccatta tgcagtattt attagtcaag ctttcactca aacacataat      5220
     atgcactagc gtgcaaacac acatccacaa cagtctatga agtatcaaga ctggcaatga      5280
     acagacacag aggggtttac caggcatagg tcgagggcag gctgcaagta tcagagtccg      5340
     tataacaggc gaggttcgtg ggcaggtagc gagtatcaga gtctgtgtat caggcgtggg      5400
     tcgtgggcag gcagaaggcg aagcagtgtc agagacaggc tggagtaatg cacaaagaat      5460
     caggcaggga ataacgctca gaaatgctgg ccggggctaa acaagacttc gcactgagtg      5520
     tttggagctg gcttataaag ggtacgtggg tcgttagctt gattcagaac aggtgtatgc      5580
     acaatcagcg tatgtgaatg atgtaatgct agaagtccgg agatggcggc ctctgctggc      5640
     cagcgagggg aatgactggg accgagtcgt tgacactttt agtagatata ttatatagaa      5700
     gacttgcttt gtttaccaaa taaagtggat ctaattggag ctgcattgta aacattaaat      5760
     atgagttaaa aaggtattac tttttagttc atatattaag gttttagtta tgataatatc      5820
     caaaatcatt ccgcataaat ctgcagattt ttaaataaaa ttctgcgcag aaattgcaaa      5880
     aaatatccgc agattccgtc ttgccctagg gatgagctct gaaaagtctt gtgaaataag      5940
     gaactaattt cagtgaaaca ctgtgaaagc acaacccatt tgctcatgca cattgagcaa      6000
     ggtcccaata caaataaagt gaaaatggca tgttactagt aacgttggaa aactactagc      6060
     cacagaggct ggtgatcaaa aaatgtaaag ccctgataat catccagtta catagatact      6120
     atctaatcca tataccataa tggaattcaa agcatagata aacagacaat gcctgtgaat      6180
     cacaaaatat gggaacagag atacttttac agtgttcaca taactgtatt aatctaaaat      6240
     aaatgagaga gaccttaact gacaagaact gtaatgagat atcagtggct ttaatgataa      6300
     atgttaaatg tttgactgga gcacttatat gttaatcatg agatgagcag tttatcatga      6360
     acttcaatcg tcagggaagc catttcagtc atccacacaa gatatttctc ttaaatattg      6420
     tttgtaatat gacctctacc cctcacacag acacacacta attcacgcac acacttgtga      6480
     acccctgtgc tgctctgtca tagcttcagg cctgagtgct gtcgggtcac attactctca      6540
     gtctcccaga atcctctgct ccactctgca cccgtgtccc actgagcgcg ctcagagcgg      6600
     tagactcaat tacagccatt tcatctcccc atgtacccat taacacacac atttatctta      6660
     cataaagaga ccacacacac acatcttaca tacagagaac agtaacacat gttcactaaa      6720
     cgtttgggat cagtaagatt tttttaatga attcacaaga aacctattct gctcacgaag      6780
     tctgcattta tttttatcca aaaaaaaaaa aaaaaaaaag agtaagaacg gtgaaattgt      6840
     ttaatattat tacaatttta agtttttgca tgttgtttcc tgtgatttaa actattttca      6900
     gcattgttac tctggtcttc agtttcaaac gacattaaca aataatgaaa tggtctgttg      6960
     ttctattttt attatacaat ataactatta tcaacactca atctgaaata taaagttaaa      7020
     ttttttttca tttgtgtact atattattgt ttactttcaa tttaataata tttaagtaca      7080
     ttttttattt tattttatat ttattatttt atttgttatt ttttattatt ttttaaattt      7140
     ttttattagt tttataatat tttttataat tctatttgta ttatactata taactat         7197
//


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