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EBI Dbfetch

ID   CR936338; SV 6; linear; genomic DNA; STD; VRT; 3994 BP.
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AC   CR936338;
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DT   09-FEB-2005 (Rel. 82, Created)
DT   10-MAY-2005 (Rel. 83, Last updated, Version 7)
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DE   Zebrafish DNA sequence from clone CH211-251A3 in linkage group 8
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-3994
RA   Holt K.;
RT   ;
RL   Submitted (10-MAY-2005) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   clonerequest@sanger.ac.uk
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DR   MD5; 014c78108ec9eb776fae875c05ed60da.
DR   ENA-CON; CT992383.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   During sequence assembly data is compared from overlapping clones.
CC   Where differences are found these are annotated as variations
CC   together with a note of the overlapping clone name. Note that the
CC   variation annotation may not be found in the sequence submission
CC   corresponding to the overlapping clone, as we submit sequences with
CC   only a small overlap as described above.
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one plasmid subclone or more than one
CC   M13 subclone; and the assembly was confirmed by restriction digest, except
CC   on the rare occasion of the clone being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Repeat names beginning "Dr" were identified by the Recon repeat discovery
CC   system (Zhirong Bao and Sean Eddy, submitted), and those beginning "drr"
CC   were identified by Rick Waterman (Stephen Johnson lab, WashU).  For
CC   further information see
CC   http://www.sanger.ac.uk/Projects/D_rerio/fishmask.shtml
CC   
CC   CH211-251A3 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
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FH   Key             Location/Qualifiers
FH
FT   source          1..3994
FT                   /organism="Danio rerio"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-251A3"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 3994 BP; 1336 A; 624 C; 663 G; 1371 T; 0 other;
     atttgtatca ttaactatta tgcgagttta ctttgcataa aagacaaatt aatatatgta        60
     actaactttt gtactagatt ttttttagac ctagactttc ttaacagtct aaaaatatta       120
     aacactaact aactaactaa ctaactaact aactaactaa ctaactaact aactaactaa       180
     gattattatt tagcttttta aaatgttaat ttcattttta ttttccttaa tgcaattaac       240
     aaaaaaatgc aaatactacg tacaaggaac caaagctaaa taaattattg gtattataga       300
     ggttgacagc cagattaaca aatagtgata agcgtacaaa tgtaacataa atgttaaatg       360
     taaatgttaa aatgtaaatg ttaaaagtga gatataagca aataaaaggt tttagagcca       420
     taaagggatt gcattttttg tgaagggact ggattaaagg actttttttt aattctgtgg       480
     aatctcaata tcatgtacac tgtaaaaaat ttccaggttt tcacaacaag ttactgtaat       540
     ttttcacagt aaattacatt agtatctctt cacagtattt aactgaaaaa ttcacagtaa       600
     tatgttgtat tcataatttt attgtgaaat tactgcaggt agcatgatta cagcaaatta       660
     ctgtgaaaag ggctatatct tttgcacgtt agttatagaa attcaaacct ttttttaact       720
     caacgtagaa attaatacaa atgaactttt aacagataat aacagaatgt tatagccccc       780
     aaaacgattt ggttaccaac atctttttgg ttgtactgca cctttattta attttataca       840
     gttaacatag aatatgaaat aatatttaat gaacaactct gtgcttagcc aaaacataat       900
     aaacttgaat aaaaagtaat taattaatga aaccaaagac tgttaaacag ccaacaatta       960
     tttcaatgtc agggtaaatg tctgctttag acggtttcat gagtattggg cacctttcat      1020
     cgcctggagg tcactaatct cagaattata tatatatata tatatatata tatatatata      1080
     tatatatata tatatatata tatatatata tatttctttt tttttttatc tatataaata      1140
     aaccacagat tagagtttta aacaactaca ttctagcatg aaaaacagtt aaaacttaat      1200
     tttcggacgc atatagagcc atcgaagacg gggcaattgt cccaatgtct agcctgaaga      1260
     caggcgcctc tcggcggata catgagtaat gagcgccgtt accgcctgga ggtcatagat      1320
     ctccgctacc ggcaaaacac acttaaaatt acacacaatc tttactaaca atccacagat      1380
     ttgagttttg aagaactaca ttctcgcatg aaaaagtatt aaaactttat ttcattacat      1440
     attacaagca atatttataa tattatgtgc ctctcatcca ccattacagc ttgatggagc      1500
     ttggtgcgaa ttgaatcctg ggaggaaaaa ataataattc tcagtacact ccaaacgaac      1560
     tttattctta ttgttaaagt cagagatata taatattttg aattgcgaag aaaataatta      1620
     actttatatt tcaatcaata tattactttt gcactgcttc ggttcaggac tcgtgtgaca      1680
     ttgaatcaga ttcagatatt ttatcagacg tgttcatgag ctcatagtca tcaacaagca      1740
     attcgtgtac aagcagtaca cgaaccaagc aatatgatga aatataaatg aattatatgt      1800
     ttgcgtctta caatattata caaaatggaa tcgttttcag gcgaattcga ctctttactg      1860
     ttcacttaaa ggagccgaat tcgactcttt actgttcact taaaggagcc gattcattta      1920
     acagaactga ctcgactcga ccgcaaacaa gcgccataac cacagacaac gcctgcctcg      1980
     tctcttcacc aaacgaattc atcctcggta agtgttaaaa tatgactttt gtccgttaaa      2040
     tgagtgttgt atgtgtattt ctgtatagtg catgtcattt aacaggaatt taccgagtac      2100
     tttagttgta ctcgcacgta acttacaggg tttaagcgcg ccttttttaa aacaggaaat      2160
     taacgacgcc agatggtgat tgtagtgttt tctgaggtat tagcataacg ttaacgttag      2220
     ttcctgataa aagaaagggg attttctttt attaacttct tgttaactgc attttctgtt      2280
     tcagtaactt acaagactga agtaaaggtg aaatgactaa agttaaggta agctctgacc      2340
     ttcacttaag ttaacgttac ggttagtcac catcatgtac gttaattttg ttcactgtaa      2400
     cgttaacgtt aagttagtta aataaactaa actcattatg aaacaagtct taactgtttt      2460
     actaaatgag gcttataata caattcagtt gtattctttt aaactaacac taacacagta      2520
     catgtatatt tctcactggt gttaatgcat tgctaacatt tactaatgag aactaattgt      2580
     atattgtcac taactgtaga ttttgttttt tggtgttcag gtgtacctga taatagctga      2640
     agtgtgaggt gagtgtaaat tctgagcaca caaatatagc ctaaattcat tatcacgatc      2700
     taaacctata tatatatata tatatatata tatatatata tagagagaga gagagagaga      2760
     gagagagaga gagagagaga gagagtatgt gtgtgcgtgt gttaagttga gtcttattct      2820
     actcttatta tattcatatt tttttgcagc cattgatgtt gaaacactga tgctaccaat      2880
     caacccttgc ttgattatta aaggtaatgt tgatgccttc ctcattttta ttagattttt      2940
     aaatgtcagg tttttcacag atttgttgtg agcagtttct tgtacaaact ctttttcttc      3000
     ttccagaagt tccaccagta ccttcagtag tagtaaatat tagacaaaga ttttttttta      3060
     aactatagtt tttattttca ttagcaattt tactgggcat gtgtgtttgt ttgcttggtt      3120
     tttaataggc agagcatgga atgtcaactt tgtttctaca aacaaattta attattcaca      3180
     aacacctcta atttagtcct tctttccccc ttttagtctt attccttgga gggtcgagtg      3240
     gtcatgggac ctcacctgga tttcacaact gactttggat ctggtctgaa actgaagtat      3300
     gctgaagatg ccttttgcac tctggaattt aaggtaatct ctacaataaa aattttaact      3360
     gagggcttgt tttggggggg ttaaacaagg attgtatagg agcacaagtc atgactcccc      3420
     ttgtcccctt gttataaagg gccgtgttgc agacacaatt tgtttgtctg tgctggagac      3480
     cagaggggaa gctgtcttta aaaggatggg gctcttatac catatgtgaa gttacctatt      3540
     caggtgagta gattacatgc aagtcattgc aaatgcataa atagtgggaa atttttactg      3600
     ggcagcacaa attaagtgaa actcaaaaca tgtggaagaa tatttagaat atttgcaaaa      3660
     aacttgattg aaatgaaaac aacacaagtg ctgtatcact tcaatcaagt tttttttgca      3720
     aaattttcct aatatttaaa tcatgaaaaa ttagcttgat gcaagaaaca tcctgctagt      3780
     attcaagagc aagtgctgtg atgcacgtgt tcactttgca ataagtgtga acccagcatt      3840
     agattatagt ctgtaaacag aaggtgtaaa tcaaatcaac tgttttaaaa tgctctgccg      3900
     aggtcattaa aatcactatt tgttgttaga ctgttcttga atgtgtgttt gtgatggaaa      3960
     tgtttttcag atgtttttgt ttaaataatt gcag                                  3994
//


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