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EBI Dbfetch

ID   CR936319; SV 5; linear; genomic DNA; STD; VRT; 4419 BP.
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AC   CR936319;
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DT   07-FEB-2005 (Rel. 82, Created)
DT   01-APR-2005 (Rel. 83, Last updated, Version 6)
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DE   Zebrafish DNA sequence from clone CH211-185L6 in linkage group 22
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-4419
RA   Barlow K.;
RT   ;
RL   Submitted (01-APR-2005) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   clonerequest@sanger.ac.uk
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DR   MD5; b9a02624da3a61ac1b044370c7123d82.
DR   ENA-CON; CT994410.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   During sequence assembly data is compared from overlapping clones.
CC   Where differences are found these are annotated as variations
CC   together with a note of the overlapping clone name. Note that the
CC   variation annotation may not be found in the sequence submission
CC   corresponding to the overlapping clone, as we submit sequences with
CC   only a small overlap as described above.
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one plasmid subclone or more than one
CC   M13 subclone; and the assembly was confirmed by restriction digest, except
CC   on the rare occasion of the clone being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Repeat names beginning "Dr" were identified by the Recon repeat discovery
CC   system (Zhirong Bao and Sean Eddy, submitted), and those beginning "drr"
CC   were identified by Rick Waterman (Stephen Johnson lab, WashU).  For
CC   further information see
CC   http://www.sanger.ac.uk/Projects/D_rerio/fishmask.shtml
CC   
CC   CH211-185L6 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
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FH   Key             Location/Qualifiers
FH
FT   source          1..4419
FT                   /organism="Danio rerio"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-185L6"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 4419 BP; 1615 A; 790 C; 704 G; 1310 T; 0 other;
     tctgagctaa aacctgttag caacatgcta aaaatattac catttacaaa agtatgcttg        60
     aaacatactc aacttcttaa ctgatgcttg aatttgggtt aattcacact agcaatgttt       120
     ttaatagcct agaaaatgtt aaaagtttca ttctttttct tcctttcctt tttatactaa       180
     ggtttacctt acaaacattc agacaagact ttctcaggct aataaagtta gcatcaacaa       240
     tctaaaaccg aaatcttata tgacactata aaagctttta ctgtcactta gatcaattta       300
     atgtatcctt actgcataaa agtgtaaact cagctttaaa agatttatct aaaatctttg       360
     ttagcatcat gctaaaaaca ttaccatgta caaaaatagt agaaacatac tagaaacttc       420
     tcaattcatg ctagcaattg gttgaaatca tgctagcaat gtttaatatg ctagacaaat       480
     ctttaaattc tattttgttt ctctttcttt tctttttatc ctagggttta ccttacaaac       540
     atttagacaa gactttctca agctaacatg aagcttgctc caacaatcta aaaccgaaac       600
     cttatgcaac actacaaaag cttttactgt cactttagat aaaatgaatg cctctttacc       660
     gcatgaaagt atgaactcag ctttcataaa tacaataata actctctctc tcggacccaa       720
     aactcttgac acaatccaat tctcgctgta attatagcca ctagccgcag caccattttg       780
     caaaaaacaa aacaacagaa agaccagaaa tatcccaaag cttcagccta cagcagaaac       840
     aacatttcag aatcacttta agcctgtgat gaattggaga ccccgttttt ttgccgctgt       900
     cagaagtgtc atcggcttca gcgggagacg tttattagtt ttcaccttcc cacaggacag       960
     gttgtgtcct gaatgctgcc gctgtgaccc acagatgcac aactgggtgt cagactttcc      1020
     tcaggcgtca gagcccacaa ttaaatgtcg atttgccatg ccaaaacaca gacctctgca      1080
     atgtacccgt ttccttagaa aaaatgtgct cttttgagac gaaaacaccc cgtgaaccag      1140
     aaaacaaaag ccagactgaa tttgcattaa actgatgctt gattttaggt gaatctgagc      1200
     agcgtgattg tatgtgatat gcatttttta atctttatca tttataaatg cagaaagaac      1260
     atgaaaagcc agaaaactca cccttgtttg ttggagtcga ccaaaatgcg caccaatatc      1320
     cctgtaactg ccaccaggat gggataatga tcgacactct ccaggcctaa acatacagaa      1380
     aaaactaatt tggtcttgtt tgtgattcag ggtctttttc aattcgtcag aactagtccc      1440
     ggacgctgat tggtcatttt aatggtgata tagtaaacat tgtgacgaat tgtgaaaggc      1500
     caattggatc tgttctgttc gattaaaata aaataaaata aaataaaata aaataattaa      1560
     gacaaaataa aaaatagaaa tctaaataaa aaataagttt aaataaaata aaaaaagaaa      1620
     atataaaata aaattaaact aaatttattt aatttaacct aaacaattta aattagaata      1680
     aaataaaata attaaaataa aataataaga ttggcctata ttaaattaaa ttaaattaaa      1740
     aagttaaata aattaaaatt aaaaacttaa aaaagattaa attgaagtta aataaattaa      1800
     ttagaataaa ataaaataat aagattagct taaattaaat taaaataaga atataaaatt      1860
     gcatttgcta aattaaatta aattaaacta aattaaaata aaaaatttaa ttaaatttaa      1920
     ctaaattaaa ttaaaggtaa gtataaactt taactagact ctttaaacta aaaaaccttt      1980
     tcaagaaaaa agatgaattc ctattatttt aatattattt attaataatt attaattcat      2040
     tacataaatt attaatatta atactaagaa gattattatt taggttgtgt tggaaagtga      2100
     ccaaaatcca acatcgagtc aacatcttaa accaacatca tattgacgtc aaatactgac      2160
     atttattcgt caggtatggt aaccaaaatc caatgtctga tcgaagtcat agtggtaatg      2220
     tccacacaac gtcaagctgt aacatcatta gacattgata tttggttgat tttaggttgt      2280
     gttgggtttg gcaaccaaaa tacgtctgat agatgtcata gtggtaacgt ccacagaacg      2340
     tcaagctgac atcattacac attgatattt ggttgatttc aggttgttag aaagtgacca      2400
     aaatccaaag ttgagccaac atcttaaacc aacgtcatat tgatgtcaaa tactggcatt      2460
     tatacatcag gtatggcaac caaaatatgt ctgatagacg tcaaagtggt aacgtccaaa      2520
     caacgtcgag ctgtaacatc attagacgtt gatatttggt tgattttagg tttttttgga      2580
     aagtgaccaa aatccaacgt ggagccaaca tcttaaagca acatcatatt aacatcaaat      2640
     actgacattt atttgtcagg tatggcaatc aaaatccatg gtctgataga cgtcgttgtg      2700
     gtaatgtcca cacaacatca agctgcaaca tcaatagacg ttgatatttg gttgaggtta      2760
     ggttggacgt agccctgacg ttgggttctg atgtcaacct gattttcatt tccaaacaaa      2820
     atgcaacgtc tgcacaatgt ttgaggacaa catcaatctg aggtcatgtt gacaagctgt      2880
     gcctgctggg aatgcttctt aaaaaaaacg ttagaaagaa aaaaaaaatc atgcggtttt      2940
     attaggaaaa tgggtttcta agaaaataag caaagttatt tcagatttca gtcttattct      3000
     ttatgcttta ttcacatttt tcaaggacgc cttaatgctt tcataaagag ctcgggctcg      3060
     ctcttatttt cattgacgga cataaacacc ccctaaaaaa acaataccca aaatgtatta      3120
     gaacaaagta tgactggaga attcaatgac acaaaaccca cttaaatcca ctacacggca      3180
     ctttagcaga aaaacaggtc actgaatctg agaccacagt gaaccgggtc aacgtatcac      3240
     atctaataac attctgaaaa gacactaaac gctgcttcaa gaaccaagaa taaaataaaa      3300
     actcctctga tgatgtgttc agtgtcctcc tggactggat tatgtctttc acactaactc      3360
     aaccttgtaa tttcttaacc catttactct tcaaaaatca ttccctgagc gctaagaatg      3420
     actttccaaa cttcagggat cgtttcaaag gtcgggaacg tctcagaagg catatcaaat      3480
     tactggttat ttgttctggg acaaaatgct ataaaaggaa agtgtgagaa gtcatcagtg      3540
     aggtgacaat aagccataat tcggctgtcg ggagacacga tggaggacaa acccagcacc      3600
     tgagagggtt caattgagat ataactggtt ttggatgtgt agttaaacat gtaatgaatg      3660
     tcctacactc ctatttgcat tactgtgccc ttgtgtttac attaggagga aattgtcgag      3720
     aattacctgg aaggcgtagg ttgaccaccc tgtcgaagag gtttctttct gccgtaactc      3780
     gatttaacac ctggttcagg agctaaagta aaccaaaaca cacacaaatg ttgtcgaaaa      3840
     ctataattct gtgcataaca caaccaccag gtaagtgtaa agcagggttc ctgcagattt      3900
     aatacatgca catttaatca ttaaaccctt gaaatgaaac tctcaaatct tttttacgtt      3960
     taaaagatcc aaacattatt gagtaacagt aaaaatgcaa caagttaaaa cacttatacg      4020
     actaaaacac atggtaatgc tttacttgaa tggggagttc ataagactgt cattaaacct      4080
     ttataatcaa tgtcatttgc tcagatatat agaatagttg gtggttcatt ccgctgtggc      4140
     aacctctgat aaatcaaaaa attaagctga aggagaatga atgaatgaat gaatgaatga      4200
     atgaatgaat gaatgaatga atgaatgaat gtcctatgac aataatgagt gtggttcaat      4260
     ccttaaagta ttctcgtcaa ctgcaaagaa gcatcgtgat ccactttgaa tgtctaccac      4320
     atgcacacca tgatggatcc accatgaaaa ggtgagcaaa tcaaacacat cggttcataa      4380
     atcaaagcct tttctaatca cccagcagcc aaagaattc                             4419
//


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