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EBI Dbfetch

ID   CR936284; SV 10; linear; genomic DNA; STD; VRT; 6350 BP.
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AC   CR936284;
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DT   05-FEB-2005 (Rel. 82, Created)
DT   13-JAN-2009 (Rel. 99, Last updated, Version 15)
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DE   Zebrafish DNA sequence from clone DKEY-176M8 in linkage group 22
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-6350
RA   McLaren K.;
RT   ;
RL   Submitted (12-JAN-2009) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
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DR   MD5; 6d9edadb005b1514d4b0ad03ad423b3f.
DR   ENA-CON; CT994360.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of
CC   a tandem repeat of more than 10kb in length where it has not been possible
CC   to anchor the base differences between repeat copies.  The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   IMPORTANT: This sequence is not the entire insert of clone DKEY-176M8. It
CC   may be shorter because we sequence overlapping sections only once, except
CC   for a short overlap.
CC   
CC   During sequence assembly data is compared from overlapping clones. Where
CC   differences are found these are annotated as variations together with a
CC   note of the overlapping clone name. Note that the variation annotation may
CC   not be found in the sequence submission corresponding to the overlapping
CC   clone, as we submit sequences with only a small overlap.
CC   
CC   The true left end of clone DKEY-164M7 is at 4351 in this sequence.
CC   The true right end of clone CH211-217A1 is at 2000 in this sequence.
CC   
CC   DKEY-176M8 is from a Zebrafish BAC library
CC   VECTOR: pIndigoBAC-5
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FH   Key             Location/Qualifiers
FH
FT   source          1..6350
FT                   /organism="Danio rerio"
FT                   /chromosome="22"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="DanioKey"
FT                   /clone="DKEY-176M8"
FT                   /db_xref="taxon:7955"
FT   misc_feature    2351
FT                   /note="Clone_left_end: DKEY-164M7"
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SQ   Sequence 6350 BP; 1979 A; 1125 C; 1133 G; 2113 T; 0 other;
     aatttattta ttacagaagg aagtacctgc ctttatgagc tttcaagttt agggttccca        60
     aatgccatag acatgtttcc ccaatcagag tttttctgtt acaaaagata cagtttctgc       120
     ctgttgtttt acttaatctt tgcaatctgg caaccacgtt tacacattct ctctctctct       180
     ctctatctca ctcacagaag agctgataaa aaataaagct taagtcggat atatttgttg       240
     aaaaaagaga ccactttaca agcctagagc tatgagccta gagttaaaat ctcagaatca       300
     gaacttttct gtgaaaaaaa aaaaaacctt tctgtctgtt tttattactt tttatttttt       360
     tttacttaat ctttgcgatt ttctcaactc tcattacaca tccttctttg agagagctcc       420
     caaattgaat ataatcaaat aaaatagtct ggggacattt tttttttttt ttcagttaca       480
     taatattttc attttctatg taagaggatt agcgccaaac tatagtaaca ataaaaaaaa       540
     acatgttaaa attaaaataa ttgtaaaaca agattacgtt cataaaattt caagatttca       600
     aaatttcttt tgaaacataa ttactttttt cttaatttaa tgagtttgtt ctcaatattt       660
     tattgttttt ttctttaaat taaatgaagt ttttcttgaa aaataattac tttattctct       720
     aaatataatg attttatgtt caatgttata attaaacatt ttgtcttgaa actggtgagt       780
     tttttttttt tttcttgatg ataaaaactt tattctcagc attgtatttt tgatattttt       840
     cttgaaattg aacaagctta atcttgcatt acacgacttt aatctctaaa gagcgctcca       900
     gcttctgtca tttatttatt tattatttat ttctgcttac caagaataat tatgagatta       960
     agtcagcacc cctcatttta acttttttgg cccatgtgaa cacatatctc cacatgtctt      1020
     tgtttcgttt tgttgggttt atgtaccaaa ggaacatttt tttggatgga tggatggatg      1080
     gatggatgga tagatggatg ggtaggttgg tgggtgggtg ggtagatgga aggatggatg      1140
     gatggacaga ccgatggtag gaagacacag atagacagac agatatatgg atggacggat      1200
     taatggatgg atggatggat ggatggagcc atggatggat ggatggatgc gggtgggctg      1260
     gcgggaggat gtatggatgg gtggatagat tgatagatat ggtatagata tatttggttt      1320
     agctgagttt tctgcatcat tacttcagcc ttcagtgtca caatacttaa taaatcattc      1380
     taatgcactt atttgcccct aaagaaacat gtattatcat gttttattta ttctattatg      1440
     tattacggtg ggatctgaat gcaaccttag cataaaacat tgcttatcag cttatcgact      1500
     cgactgccag agaagttcat tattcgaaag tgttcctgat cattgcttga tattagaaat      1560
     ggatggcaag caagcataga agaacattca caaggcatca tctgaattct caagtagagc      1620
     acaagacatg tgaatcctca acataatgca tggaaaaaag gtgatattca gcaactagtg      1680
     aagagctcat tacctcgacc tcagtgtttc aggccatagt catgaataat gaggccatta      1740
     tggagatgta accgcatgga tcggaaatgg cctttaaacc tttaaatcct gctgctgaaa      1800
     ttgtgtactc cgctgttttg tgggtttgcg tgctttacat cgcaacaaga atcatgatgg      1860
     acactaaaac ctgagatgct gaatgcagaa tagtttatgg ggatgacaga atgattttct      1920
     ggaatatcct gcttctccac atgaaaaaaa attattcatt ggatgtcatt ggttgtaatc      1980
     tatttatatg ggctgaattc aaacaaaata attcaattta ttaatgttta atgtcatttg      2040
     tttgtttaaa tttggcccat atacattacc tgagaaaagt cttgttgcct atccaaattt      2100
     taggaacaac aaataataat tgacttctag ttgatcattt ggtatcagac gtcacatggc      2160
     ttatataaaa ggcaaaagcc tctagattac acttattata ccaaaatata atatgatcat      2220
     gtcttcattt ttaattattt aattaggata ataatgtctg actttgctta gacaaaagtc      2280
     ttgtcactta agagaaataa tgtacagttt agattataaa gtcatggtgc agtggaaaaa      2340
     taattaataa tatgcatgac tcccatgagc ttggaagact gcatccatac atctctgcaa      2400
     cgactcaaat aactttatta acaaagtcat ctggaatggc aaataaagcg ttcttgcatc      2460
     aatattattt ggattaatct tcattgcctc catcttgtcc cagacatgct caataatgtt      2520
     catgtcttgt gactgggctg gccaatcctg gagcatcttc aatctcttgg ctttcgggaa      2580
     ctttgatttg gaggctgaat tatgaggagc gctatcctgc tgaagaattt gccctctcct      2640
     gtggtttgta ttgtaatggg cagcatatat ttcttgatat cttaggctgt tgatgttgcc      2700
     atccactctg cagatctctt ggtgtacccc catactgaat gtaatcccta ccatgatttt      2760
     tccttcacca aacttgactg atttctgtga gaatattgtg tccagactag aactaagaac      2820
     acaaacttgt gtcttccaac tgatatttac gacaagactt tgtgaggtag tctaaaattt      2880
     tttgcaacca attagcttaa actcagtaaa tgcaatgatt ttttttttca gtttatttgt      2940
     tgtttttaaa atgttgggtt tttttaggtt taaagggcac atagttttcc ccttttttta      3000
     tgatttaata ttaatattag ggttcttctg agtgtgccag tttaggttca gttcaacaca      3060
     cagttcagat gtttttatta taaggtgtta aaaagtgtca tgttggtggc gtgtacacag      3120
     cccgctgttt taggggcgtg ttgcttcaca tgaaaattag tttcggcttc ccgcccaacg      3180
     taacaagggg gtggagccaa gagctcccac actctgtgtt tgcaacagac tggcagacgg      3240
     agagagagaa gctaagctag gatcagcatt cagccgtaca tgtatgactt ggacacagac      3300
     caagcagaga gtacaaaatc atttgtgact ttctatagtt tgtataatct ccgagactaa      3360
     taaccacaca cactgaatta actttgactg aggcaccgga tgcgccacga cacggcacac      3420
     cagacactca gtaacgcggc agaaacatga agtgtttcga atcatcacgc cacgcagtgc      3480
     catgcattcc agaactacaa acacaagcct ccaccagagc aaacacaacg gcccccgacc      3540
     cgaagctccg ccgcatgcac cccgacagaa acccacgccc agaactccga aacgcatggc      3600
     gccgcgccac gcagagaggc gcttctgatg tgtgacctgc aggcaagttt gttattttat      3660
     tttcaatgga gagacgcaca cataaggcaa cgtgcttgaa cttttccagc tgcacctaag      3720
     atcacaggga gcttctgtgt tcacgagaaa agcaaacggc tgtagtttaa ggtagacgca      3780
     atgaaaagca cgtttgcaaa cctaccaaaa ggtacaagca ataattccga ttagagcgat      3840
     aatgtggaga ataatgatct tgtgataagc ccaatgagcc ttacatctaa aaatagagca      3900
     agggtgttcc cttagtgata ttgctttgac tcacacactg aaaatggtgg acgtgaaaca      3960
     agaaactgag gatatgatcg tgacgcgcgg ttgtcaatca ttattggtgg gcaggggtac      4020
     cgctctccta catcaagttg cagtcggtct gaaaaccgct ccaattggtc cactgttttt      4080
     atgttgttaa attgaaaaaa aaaaagtact gggtgtgttt atatcacact aatataacgt      4140
     ctatacacta tacttacaca catcagtcca aaccgcttga aaagtagatt tttcaccata      4200
     ggtgcccttt aaattattat atataaatgt ttcatatttc tttaaaggag caagttatta      4260
     taactgtcag tttattcacg cattaattaa ccagttaaac tctgctgtta ttttgggatt      4320
     tccgccagga ttttgcgtac ctacatttaa aagcttccca aatccacata cagaggtgta      4380
     aatgcaaaaa tttgaaatca ttttaaagaa aaccctttga attttcataa aacactatta      4440
     aaagtgttta aaataactgt atatgttgtc tgtcttataa taaatagttt ttttttatat      4500
     atactcaaat ttgaaagtgt accatttagg ttttgtgtgg tctagcttgc tttaattaat      4560
     tttgctggtt cctgcacatg tctgttatca taggaaaaaa gaaaaatgtc tctatcacaa      4620
     tctatgcaaa agttatcgta ttccaattga tgagaggtgc tatacaagcc aaagggatcg      4680
     atcattattt tcacatttca ctattctttt gtttgatcaa acataattca ctgtgtttgg      4740
     accacgtcag acatataaaa gaaattctta tgcacatcac ctcaaaaaca gagaagaatg      4800
     gccatgaagc acacagcata aggtaagaga tgactgttgt ctttgcaatc tggggctgct      4860
     tagtgatcat aaatgtattg tttttacttc tgcgctatgg aaacaccgcg attcattcga      4920
     caactgtttg atatgtgaat ttaattcagt aaaaagaatg ctagaactgt atgagcacca      4980
     gcaagagctt tcatttgagc tataacttgt acatgtgtca tatgaaaaat ataaaaataa      5040
     accaatgtaa aatacctagc tcgggtctcc aaaatactgt gtattaaagt gtaaataact      5100
     tttgtacagt agaataaaaa ccaaattgat gcatatgtgc ataaaatgta gattctacac      5160
     tttcaaacga aacaacttaa aggggtctgg tgcaatgcta gccctttaaa tcttgaagtg      5220
     aaagttgatg acatcaactg gttaaaacaa aattacttac ctcttttcaa attttaacat      5280
     atatgcttta agcttttttt tttttttttt tttttacagt ttctgcagca tcaaccagag      5340
     agacttttta aaaataaata atgtaaaaac ttgtattttt aaaacaattg ccaattttta      5400
     accatactag gaaagtgctg aagtttgtca gacagtgcaa cattaaaata ttccatttac      5460
     attttaaact tttgacaact tcaaactgaa aacctttaag ctataagctt ttaaaactta      5520
     ttcaaacttt cttgtcagcc aacgtcagtt atcacacaca cacgcacata ccgtatgcgt      5580
     gcgcacacac acagtgtcta attaaataat ttgccatatt ttttaatgct ttaagccatc      5640
     agcactcagt cctattaata tttcataata ttaaaattct gcagattccc aatattctgc      5700
     ttttactctt atgaagatct aaattggctt tgtagatcaa aaataattac agtaataatc      5760
     aagacagcag gtgactgcaa cctaatcatt aaaaatactt tgataagatg ataacatttc      5820
     tgttatgctc agtgaaccat gctgtctggc tccaattatt attttaaaaa tatgtttaca      5880
     tttttgtaac atatatattt ttacttttga gtcattaact tacagatgta gctaatttca      5940
     gactccaaaa aaatgtttta cgaacaccta attaatgctt tctctaacat ttcaccttaa      6000
     agaaatgcca gtggtctgca tgacgtagtg aaccgggtca cctagagttt cagatttgtc      6060
     tctagctgga gttttttagc tcctcattat ctttaaggct tctctcactt cactgcatcg      6120
     ctcattacgg cacacagaac gtggaagctg acttactctt tactgtgtct aaatggtgct      6180
     cgcattttac tgtctgaggc agaggtgcaa agctgtgcta agataattag ccacctgttt      6240
     ttgacaccat ctggcacttt tctagggttt ttaatcatta aagagagcag agtttatggt      6300
     ccatatgcac ctatataagt ggatgtgcag aatactgtgt aaaaattctt                 6350
//


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