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EBI Dbfetch

ID   CR854861; SV 1; linear; genomic DNA; STD; HUM; 8396 BP.
XX
AC   CR854861;
XX
DT   22-OCT-2004 (Rel. 81, Created)
DT   13-JAN-2009 (Rel. 99, Last updated, Version 10)
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DE   Human DNA sequence from clone XX-BQB97F8_109B10_3 on chromosome 6
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KW   HTG.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-8396
RA   Palmer S.;
RT   ;
RL   Submitted (09-JAN-2009) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: vega@sanger.ac.uk Clone requests: Geneservice
RL   (http://www.geneservice.co.uk/) and BACPAC Resources
RL   (http://bacpac.chori.org/)
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DR   MD5; ba9dee4ad095910b14c97b4514597350.
DR   ENA-CON; GL000255.
DR   Ensembl-Scaffolds; CR854861.1:1-8396; homo_sapiens.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: vega@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   This sequence was generated from part of bacterial clone contigs
CC   constructed by the MHC Haplotype Consortium and collaborators.
CC   Further information can be found at
CC   http://www.sanger.ac.uk/HGP/Chr6/MHC
CC   
CC   IMPORTANT: This sequence is not the entire insert of clone
CC   XX-BQB97F8_109B10_3. It may be shorter because we sequence overlapping
CC   sections only once, except for a short overlap.
CC   
CC   During sequence assembly data is compared from overlapping clones. Where
CC   differences are found these are annotated as variations together with a
CC   note of the overlapping clone name. Note that the variation annotation may
CC   not be found in the sequence submission corresponding to the overlapping
CC   clone, as we submit sequences with only a small overlap.
CC   
CC   The true left end of clone XX-BQB97F8_109B10_2 is at 6845 in this sequence.
CC   The true right end of clone DAQB-97F8 is at 100 in this sequence.
CC   The true right end of clone XX-BQB97F8_109B10_3 is at 8396 in this
CC   sequence.
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FH   Key             Location/Qualifiers
FH
FT   source          1..8396
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /mol_type="genomic DNA"
FT                   /clone="XX-BQB97F8_109B10_3"
FT                   /db_xref="taxon:9606"
FT   misc_feature    6745
FT                   /note="Clone_left_end: XX-BQB97F8_109B10_2"
FT   misc_feature    8296
FT                   /note="Clone_right_end: XX-BQB97F8_109B10_3"
XX
SQ   Sequence 8396 BP; 2680 A; 1708 C; 1551 G; 2457 T; 0 other;
     tcctgcctca gcctccctag tagctggaat tacaggcgct caacaccatg cccggctaat        60
     tttgtatttt tagtagagat ggggtttcac cttgttggcc aggctggtct tgaactcctg       120
     acctcaggtg atccactgcc tcggcctccc aaagtgttgg gattacaggc gtaagccacc       180
     acgcctggcc aatctggcac ctttttaagt ttgataagaa acatttacaa tctagtctgt       240
     ctgaagcctg ctacttggag gcttcatctg catggtaaat aacaacctta gtctccacaa       300
     cctcttatct taacctagac acttctttct attgaatcca catctttaga taaattctca       360
     aacaattgcc aaccagaaaa tctttgaatc cacctgtgac ctggaagccc ctacttcaag       420
     ttgtctcctt tctggaccaa accaatgtac atcttacatg tattgattga tgtcttatgt       480
     ctccctaaaa tgtataaaac caagctgtag cccaaccacc ttgggcacat gttctcagga       540
     tcttctagaa ctgtgccaga ggccactggt cactcatatt tggctcaaaa taaatctctt       600
     caaatatttt acagagtttg actctttttg tcaacaactt aatgcggggg ttaaggacac       660
     caatgcccaa cacagtcaaa aatcttcata taacttttga ctccctaaag actaccaata       720
     gcctactgtt gaccagaggt tttaccaata acataaacag tctagtcata catatttgta       780
     tgttatattt attatatact atattcttat aataaaatga gctagcaaaa aggaaatatt       840
     aagaaaataa taaataaaat aaaataaatt tacagtactg tactgtgttt atcgatactg       900
     taagtttaca tgagctggtt tacaagacaa accatgtgtc taaaattgtg aagaaccgca       960
     gctgcagacc tcactctatg gtatatatca aagaattcaa ctttttcctg taatgccagg      1020
     acttttctct gctccttggg agcacttcag catcactagt ggcactttgt atagatccca      1080
     tgatgttatt caaggtttac aacataacgc taaacatgaa aaatatacga gaaccataag      1140
     agatcacttt ttactgcaat acacaattta tgatgattag catcaggagg cattttatgc      1200
     acatacttgc agcactcgga cttaccacag cagcaacaga aggtggctat gaagttatca      1260
     cagtaatgtc ctatgtatta tagttattca atgcagttgt gactcaatac tgtatcttta      1320
     tgtttgttta catgtctctc cactgtgaat ggcattatgt atggtctgta agtgcataac      1380
     ttttcataag ttttaatttt ttataacaga tttgtgcata ttttatggta gtaaattata      1440
     aaaacatact agtatctaca tatgttttat gagttcatga catacctaac tttaagaaag      1500
     ttttcaatat ttctaggcta catgattcat ctgtgggttt tttttgcaaa ctgtcatata      1560
     tctccaaaaa atttcaaata tatttatttt taaaaatcaa cccataagag gacccatgca      1620
     attcaaacct gtgttgttca aaagtgagct gtaattacaa aaaggagaaa ataattatct      1680
     gaaactgatt tcaacaaaaa taaagataaa atattttaat tatcctaaag aaaaataatt      1740
     ccccaatatg actaaacaat gttaactaat aaaaacagtc ctttgtggat tctttttcaa      1800
     gtactcctta gaggcaagac aagaacatta tttgttgaaa ccattttggg agtaattatg      1860
     cttagtgaaa ttcaattagc cagtacattg atagtaccat ttgcacttaa catagaatta      1920
     tggaatggga tctttactct ttgactaaga aatataagtc tcacaaatta ggcaagaaac      1980
     attgtagctt agtttttcat cattatatac tcatgaactt tccaactcac ttcctgaaaa      2040
     actggccaca tagctacaat tatttgtcac ccccttggta actccatgtg gatactctgc      2100
     tgaaagcctg gcatggtccc cgtgcttcca gtgcacaact tcctaatatt ctgtgcttgc      2160
     caattcctaa gtaagggtga aaaagttgaa actccttgtc ttttgtatga agcagtagtt      2220
     ggaaaagtgt gtcacacctc atgtaggaag ctatagacct aagtagggtt tattgagatg      2280
     tcctatagat ctccctagaa tatagaaatt cctgtcaagg gagaagagga ataaccaagt      2340
     gatctgccat tttcattgtt ggaaaaaaat atcagtattc atgtaaaaga ggtctacttt      2400
     atgagttaag tcttggtcca aaaggaaacc tccatataca tgcaatgtaa gtagggattg      2460
     gtcaatactt tctcgggtga attctcaagt acaagagaat attttaactg caacactgcc      2520
     tcattggtgt caatacccag ctatctttca gcggggctac tggttgttgg agcaggtaca      2580
     gacttccaaa atccaagtga agaaaaagta cagtgagtca tattcttttt tatttaaaaa      2640
     aataaaaatt aacacactac ttttcttata atactagtaa cacctgccca ataaggaaag      2700
     attagaagtc tacaaaatta atagagacaa attaatctgt catttcttca ttgtgagata      2760
     atcactatgg gatccactct ccaatgcaac tgatttttaa aaaattaaag cctctgaaaa      2820
     gcttcttaag gacaaacagc aataatgaga catctgttca agaaaatctc tgaaaattgg      2880
     caagaaaagc aagagtctgt ggtatttgaa ccaagactat accctccctc tctcctgcat      2940
     gccagctcag tgaggtcagt aaggcataga ctccactcta gattgctaca gcccagagca      3000
     caggcctccc tctccccaca gctccatatc agagcgcttt atttctagga agggcaggaa      3060
     ttcagaatcc ctcatcctgt ccccagctac ctgttgctga gactatgtcc gagacaagtg      3120
     cagttgagaa gtgagaggac cgttcttctg cccaattccc acttgtggaa tggagagtct      3180
     gccttgggtg tggtatgcta agactactgg ggccctaata accctttacc tggctcatga      3240
     gggaatggct ccactgcagg agaggcaaac caataggaca gcaggctgct ggccacaccc      3300
     tccacttagt gctcagctcc tagaattgag gagtcactcc gagagaagct tgccacagtt      3360
     acacccagct ccagagccct gacttagaga gtttgcctgg gaggaaaggc aatatattag      3420
     gaatatattt taggaacata gaatatattt tatatctatt ctatataaaa tggaatagat      3480
     atcctaatgt attcccaaag gaagtaactt catgtggaac agagcatgga gaagtttaaa      3540
     cctaagggca ctctcaatta cagtagagtt gtggtgaaaa gcagttggga gatttgtgca      3600
     tctaatgcag gtacagctta gactgtaggc tggttagttt acagaagaga actagagaat      3660
     aaaataggtg ggaagagccc tcccaaagta aaacaaatat caaacactga cctcagaaac      3720
     tatttcatag aaggactcac tattttattc gattactttg tagaggaatt ttgccccagg      3780
     gcattattga aaagagtggt aattaatgga cttcagtggc tgggtaggtg agggaaagaa      3840
     tgaaaaagag tcctacagga ccactgtcat tccagggtaa ccctggatat actcaaagct      3900
     gggcctcctt gaggtaacat caaaagctta acactgtggg atgaggagat gaagacagac      3960
     tttattaaaa taatccagac aatcattgtt aatcacataa acaaacaagc aaataagaat      4020
     aacaagcaaa atgtgggggt agtacccaga gtttctataa tatagttcct aaaatgttca      4080
     tttttcaaca aaaattatga gctacgcaaa gaaacaaaaa agtgtgacca atacaccaga      4140
     aaaatagaag gcagaagaaa ttgcttgaga gaacaaattt aacacaaaaa tatttaaagt      4200
     agctactata catatgttta aatatattca gtattttcat caggattctc cagagaaaca      4260
     gagacaaaaa gatatgtatg atgattgact cgctcaatta tggatgccaa gaagtgccac      4320
     aatatgccat ctgcaagtag gagacccagg aaagcaggtg gtgtaattca gtgagagtca      4380
     gaagggttga ggatcaaggg agccaatggt acaactccca gtctgaggcc aaaggcctga      4440
     gaaccaggac atgggctgca gtcatggcag gaggagggga agaaggagct ctggtgtcca      4500
     ggggtagaag tagatgtccc agctcaaaga gaaagagaat tcacccttcc tccacctttt      4560
     tgttccattt gggtcctcaa tggactgaat gatgcccacc catattagtg agggatatct      4620
     tctttattca gtcttctgat tcaaatacta aaatattctg gaaacaccct cacagtcaca      4680
     ctcagaaaca atgttttacc agctatctgg gcatctctca gccaacccaa gttgacacat      4740
     aacattatcc attacattca tagacctaaa ggaaaggatg gctaaagaag tgaaggaagg      4800
     tgtgatggca atgtttcatc agagagaata acaataagag gaggtgcagc tgggcttcct      4860
     gggtcgagta ggggctcaga aagctgtgaa actcactcat ttcctgcatc aggacttact      4920
     tcagtcctgg atgaataaca ctgaagctat atacttacaa tattcctaac acccggattt      4980
     gtatatgtgt tttcttcccc aagaaagcta taaacagcga aaattttgct gtaagtttcc      5040
     ctgtgtcttt ctctccctct ctccctttcc cctccccaaa actaaagatg aaaggaatgt      5100
     taactgtccg tttttctgtg accagcaaac cttatctaac ttcccaattc cagttccttg      5160
     tgaacatact ttataaagtc ctggtaagat cctgtctctt ttgctatgcc tctacaaggt      5220
     cataaagtaa ataaaaccta ggttgcaatt ccggttttcc tcaagatcta agacatggaa      5280
     caaaataatt tactgccttt gtttctcact ctggtaacat cttcccaccg catgtatttc      5340
     cccccttaaa gagtttaaaa ggcaattacc caaaaccagc agtggctacc cgttcgagac      5400
     cccttccaca ctgtggaagc tttgtacttt cactctgctc aataaagcct acagcttttt      5460
     ctctctattg gtccgtgtct ctatcactcg cggcaggcag ccgccacacc aattctttgg      5520
     cgtggctaag gcaagaacct ttggcattac aacaacagcg atagtagttg tcttagtcca      5580
     ttcagctgct ataacaaaat gccttagact aggtaattta taaacaacag aaatgtattc      5640
     ctctcagttc tggaggctag gaaatccaag atcgaagaac aaacagattc agtgtttggc      5700
     aagggcttac tgtctgtttc ccagacagtg ccttccacct gtgttttcct tttttttttt      5760
     tttttattat tatactttaa gttttagggt acgtatgcac aatgtgcagg ttagttacat      5820
     atgtatacat atgccgtgtt ggtgtgctgc acccagtaac tcgtcattta acattaggta      5880
     tatctccaaa tgctatccct cccccctcac cccaccccac aacagtcccc tgtgtgtgat      5940
     gttccccttc ctgtgtccat gtgttctcat tgttcaattc ccacctatga gtgacaacat      6000
     gcggtgtttg gttttttgtg cttgcgatag tttgctgaga atgatggttt ccagcttcat      6060
     ccatgtccct acaaagggca tgaactcatc atttttctgt tttcatacag tggaagtggt      6120
     gaataagctc cctcaccttc ttttacaaga gtactaattc cattaatgag gactctaccc      6180
     tcataaccta atcacctccc aaagacccca cctcttaata ccacacacta gaaaatggga      6240
     attgagcttc aaaatataaa tctgggggca ggggacacaa atatttagac aatagtataa      6300
     taaaaaggaa ccaaatagaa attatggagt tgaaaagtac aataattgaa ataaaaattc      6360
     actagagagg cttaaccata ggtttgacct agcagaagaa agaaatgtag aataaagttt      6420
     aaactatatt tcaaaaaaag attttggtag gtctatgcca tgcttcttcc tcatcatctc      6480
     tgccttttaa aatccaaaga cattttcaaa gtatatttaa ttgtaacatt tcccttgaaa      6540
     gtacgcatta ttctccaaat gtacattatt ttttttctaa gaaaccacct actacttagc      6600
     attataaata ggtgcttctt ttgtgttcca ttagaccata agccccttaa gtttaagcct      6660
     gttttccaca agtctgcatc tcccaccatg cctagaaaat ggccttgatt caaaaaatat      6720
     ttcttgtgtc tttaaacaaa ttgagttgaa ttcaacacag aggggcgttt ctctacaact      6780
     ctacactgac cctacattct ctagtgtttt catattacac ttacctccaa cacatttatt      6840
     tgttcctggt ctcgctcttc ttcagtccta agttacaact aacaaatgaa ttatataaaa      6900
     acaataactg gccaggcgtg gtggctcaca actgtaatcc cagtactttg gaaggccgag      6960
     gtgggtggat cataatgtca ggagattgag accatcctgg ctaacacagt gaaaccctgt      7020
     ctttactaaa catacaaaaa attagccagg cgtggtggcg ggcgcctgca gtcccagcta      7080
     ctcgggaggc tgaggcagga taatggcatg aacctgggag gtggagcttg cagtgagccg      7140
     agatcgcgcc actgcactcc agcctgggtg acagagcaag actccatctc aaaaaacaaa      7200
     caaacgaaca aacaaaaata accactgctt cctatattac ctcattctca tgtgtgcttt      7260
     ttcaggtaca aatttctaga gattaattca aacacaagga attgcatctg gaaatttaga      7320
     agctggaatt ctctaatgat agagactgcc tcttaattct tgtctggcca agactagcat      7380
     tgtcttcagt caagatgcaa atgtatactt cctcgcccgt ttgtcgataa gctcaatcac      7440
     atgtagataa gtcaacttat cacgtaatat aaatggttgc aaaagaaggg taccagggct      7500
     ttggaattag gcagaactta gtttaaattt tactctgcta tatcctggat gtctgacttt      7560
     gggcaatttt aatggtctct ctgaatctca acattttaac ctacacaata tgttaagcaa      7620
     gtcttatatg aataaataat tgaacaacat taaaattaaa gttaggtata ctatctataa      7680
     atctaacaag ttatagagat ctgttacatc agggttttac actgaactaa atgaaattga      7740
     tcaaaattct ttttgatcaa aaacagatga ttgttggtaa ttttaggtag tttaatgtaa      7800
     tttaacactt cattaaaaga cattagagac tgggcatggt ggcttatgcc tgtaatccca      7860
     gcacttcggg aggccaaggc ggtggatcac ttgaggccag gagttcaaga ccagcctggc      7920
     caacatagtg agaccttgtc tctactaaaa ttacaaaaat tagctgggca tgatggtgtg      7980
     agcctgtaat cccagctact caggtgagtg agacacaaga cttgctggaa cctgggagtt      8040
     ggaggttgca gtgagtccag atcgtgccac tgtactccag cctccaggca gtgtgagatt      8100
     ctgtcaaaaa aaaaaaaaaa gacattagag atacctatgt aaatggaaag atatgctata      8160
     ttcacaaata aaatatccaa aatataaaca caatttttct ctgagttaat ctacagaacc      8220
     aatgcagttc tacttaaaat cccaacataa tattgtggaa tcactatgct gattgtaaat      8280
     aattatagaa gagcaattgt ttaagactag cctataagtt agttacacat gcaaataaac      8340
     agtttggttt ctttactagt tatacataga aagaaacagg ttggtaagat tttgcc          8396
//


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