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EBI Dbfetch

ID   CR545461; SV 6; linear; genomic DNA; STD; VRT; 3994 BP.
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AC   CR545461;
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DT   01-JUL-2004 (Rel. 80, Created)
DT   15-FEB-2006 (Rel. 86, Last updated, Version 7)
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DE   Zebrafish DNA sequence from clone CH211-219C23 in linkage group 11
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-3994
RA   Smith M.;
RT   ;
RL   Submitted (15-FEB-2006) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
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DR   MD5; d2db8d978defa60ed6033ff38637068e.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of
CC   a tandem repeat of more than 10kb in length where it has not been possible
CC   to anchor the base differences between repeat copies.  The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   CH211-219C23 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
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FH   Key             Location/Qualifiers
FH
FT   source          1..3994
FT                   /organism="Danio rerio"
FT                   /chromosome="11"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-219C23"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 3994 BP; 1182 A; 704 C; 826 G; 1282 T; 0 other;
     aaaagtacac tgtaatttca ctgtacttac gcggtacttt gcgggttgta aaagaaagcg        60
     ttaccaaaaa atctactgca aacttttact aacatttata tacttttatg tttcacttaa       120
     tttttcccat ttatcaaaat tttatttcat attttcccct aacatattaa tttgggtgtc       180
     cacatttttt atactgtgat ctaaagtttt tagattagtt gttagattga tagattattt       240
     tcagtttggg ctttaatact gactaattta acaaagtata acgtatacat taaaatagag       300
     atctgtagga gtgtactcat ttatgctaag cactgtatgt atgttcacat taggcttttt       360
     ctaccacttt ttcattttat tattaacatt tgttcatcta atgtgaggtc attgtgaagt       420
     gctacatgtt atacttcata atccttttgc agtttattta ggttgaaaca tttgtttcat       480
     ctgaacatgc atatacaata gagcagggca gctcaaccct gctcctggag atctaaagtc       540
     ctgaagagtt cagctccatc cctgatcaaa cacacctgaa ccaattaatt aagacctaaa       600
     cggcacttga taattacagg caggtgtgtt tgacatgaat tgcaactgaa acctgtaaga       660
     tggtagatct ccaggaacaa ggttggtcac ccaatagagc aatgcagtaa atattgttgt       720
     tattatactt gttaacatta cttttgttca gcttaggtca attttgtgct aacactgttt       780
     atcgcatgat aaatgcttca tcttttaatc gcagcaagaa tattcaactc tatcataagc       840
     ctactttaca tagtgactgc cactgtacta ttcactactg tcctgatgat ttactgtaat       900
     gatggtgttt tttttttttt ttttgcatct gtcagatgtg tgtatgtgcg gtgtggtcgc       960
     catgctattt ctgttcttaa cactgcttat gatgacatac aggcttatgc tttgattaag      1020
     cggtggcgtg aatttaagca ggtgtagttg tgttggcata ttttgataac agatgcattt      1080
     taggcttggc tcagccaaat ttatttgggc ccacccacat tgtgagtcct ggctatgcta      1140
     gtgccgtgat gggaggaata aatgggcgtt taatgagaat actctggagt aatggaagaa      1200
     actttggtgt gggtactaca agactgcagt acaatgtctg aaattccaac agtaaacaag      1260
     gaaacaccaa ttaataatta atcaattcaa cagttgggtg gcacagtggc tcagtgaata      1320
     acactgtcac ctaacagcaa gaaggttgct ggttcaagtc ctggctgggc catttgtttg      1380
     catagagtgt gcatgttctc ccagtgtttc cgtaggtttt ctccgggtgc tctgggttac      1440
     cccacagtcc aaagacatgc accatagtga actaaataaa caaaattggc tgtagtgtag      1500
     tgtgtgtgtg tgtgtgagag agagagagag agagagagag agagagagag agaatgtggg      1560
     tgtatgggtg tttctcagta ctgggttgca ggtggaacgg catccgcttt gcaaagcata      1620
     tgccggaata tttggcaatt tatttcacgg tggcaacctc tgaaatagag actaagccga      1680
     aggaaaataa atgaatgaat ggtattcagc agtcccatga gactaatttc taaatcacct      1740
     taaaagcaat ttatttcaat cgaaaaaaaa tcttattggt gtcaagatca taaaagtcca      1800
     caatgtgaca tacatttcaa caatactaaa caacaaaaat ttaaatatta aatgacagca      1860
     ggactgcatc tcctgttagc ttggcagtga ttaatttctg aatgaatctc catttgtaat      1920
     aaattaagat tacgattgat tacattgcct tttcacaaag acagactata gattcctgta      1980
     tgaattcatc attggaattc attaaaccat caaatgcctc taatatttac ttattagaca      2040
     ttcactgtca gctacttttt tatttctatt tagatattta tattttcagt ttcacatttc      2100
     ggtcaaatat gaataaaaag cttttaaatc tttaatttat ccgtaaaatt tttccatatt      2160
     ttagtcaatt tgagtttgta ataacacttt aagataaacg tctttatttt gtaaaacatt      2220
     agattgtttt gtgaagaatg ttgcagtaaa cattgtttaa ataaatatat ctaaaaacag      2280
     gcgacgcagt ggcgcagtag gtagtgctgt tgcatcacag caagaagggc gctggttcga      2340
     gcctcggctg ggtcagtttc ccccacagtc caaagacatg ttacatgtga attgggtagg      2400
     ctaaattgtc cgtagtgtat gagtgaatga gtgtgtgtga atgttcccca tagatgggtt      2460
     gcagctagaa aggcatccac tgcgtaaaac gtgctggata agttagtggt ggttcattcc      2520
     gctgtggcga tcacagatta ataaagggac taagcctaaa agaaaatgaa tgattgaatg      2580
     aataaatatc taaaaacaat cgtggctact ttagtctaaa tgtttgttgt gaaataaact      2640
     actaatgtct gatatacatt taaaacatga ctttttgttg aaatttctca atccaattga      2700
     atttatgaat agtcagatca gttcatctcc gcatcgttaa gtagataaca cgttttaatc      2760
     gactgacagt tctatctgaa atatacattt aatttataac cctgaatgca tctaatctta      2820
     aatcagggtg gtcagactcc ccttaaacag ctccaataac tcgatttaat cttcagtctg      2880
     ttgaaatcta aagtagccat ccagatatgc agaacgcgcc taaaatgtgt ccgtttaagt      2940
     gtcgagcgtg ctgtagtgcg tctcagtgtg tgtctttaag tagtacgctg cggtaggagg      3000
     agttgtagcg attgtgacgc cgccagcgga gccgtggtgc tgagctgaac agcgcctgtc      3060
     cacctgcagt agggcgcgag accgaccggg acaatattct ctcgcatcgc tcagcggaac      3120
     ctgctaccga cagcacatct cacaggaatt atctgcacgt ttgtgaataa caaacatctg      3180
     cctccttcgc tgatggccaa aatgaaaacc ggctgcgcga ttcttgtggc gtgtgcctta      3240
     gttgtgggca catctttggt aagactaaat gttttattta caaacattcc tgaagtaata      3300
     ggctactact taaaatcaaa ttctagtaag ctgattgttt ggtggagtgc acttgtgtag      3360
     gtgaatttat gtcggtaggc gacttactca aagaacagta gtggtgcatc gagcgcttaa      3420
     atactttgtg tgtttggaaa tccaaaattg ctgtcgtagc acttatataa tagtcgcttt      3480
     ttctgtcaaa tagcgttcca acaagtacat cagtttgtgg tgaacactag tcgtctatct      3540
     gtaagctgca gtggcttgca gctgcacttt taacacacat tgcagaggat gcggcgatgc      3600
     ctgtggtgtg tctgcgagta atagtgctgc tctgtcctta ccggaggaat atgcgaatat      3660
     gcaaatcgat ttaatattaa tatgcatgct aaggaatatt catgctccta ttcataacat      3720
     cagggataat ttaacttgta gggttgcttt agagtcagcg atgcacattt ctctccctct      3780
     ctccagaaac aatacgagta gaagaagccc tgtacatgaa atctaaaagg tgctggagtg      3840
     ttaagtaaat ataagttctg caaataagac acatattgcc gttgaacgtg gtggatattg      3900
     acattcactt tgatgactca ttcagaataa aaatctatcc agctgggggt gaaatgtagc      3960
     tatagagatg cattcacatg gtgggcagag gcag                                  3994
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