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EBI Dbfetch

ID   CR533574; SV 5; linear; genomic DNA; STD; VRT; 7121 BP.
XX
AC   CR533574;
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DT   22-JUN-2004 (Rel. 80, Created)
DT   13-AUG-2005 (Rel. 84, Last updated, Version 7)
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DE   Zebrafish DNA sequence from clone DKEY-101H2 in linkage group 25
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-7121
RA   Howden P.;
RT   ;
RL   Submitted (13-AUG-2005) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
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DR   MD5; d9df81c787bc5398efcfb47d8862a7ff.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of
CC   a tandem repeat of more than 10kb in length where it has not been possible
CC   to anchor the base differences between repeat copies.  The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   DKEY-101H2 is from a Zebrafish BAC library
CC   VECTOR: pIndigoBAC-5
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FH   Key             Location/Qualifiers
FH
FT   source          1..7121
FT                   /organism="Danio rerio"
FT                   /chromosome="25"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="DanioKey"
FT                   /clone="DKEY-101H2"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 7121 BP; 2315 A; 1323 C; 1349 G; 2134 T; 0 other;
     ctatgcaaga tcaaacgctt aaaacacaca ggatgtacag caatacacaa atatctttac        60
     aaaggaaaaa aaataaagga ttaaaatatt attaaaatta ttatttacta catcaataaa       120
     aaaaccacca cctccatgcc ttcttcattt gcgggagctt tttcagttta ttcatgacaa       180
     tttgaatttg tataatatta ttattaacaa tattaattat ttcttgcata tttatatttg       240
     ttttaataaa aacaagttta gatttgtcca cctgtcaggt tttggagacg cttgcatcac       300
     catatggggc ataagaatag gacgcgtgtt tggatataac cacacttcat tattattgtt       360
     tattaatgca tttgctggaa attagaactg aatttaaaaa tagttttgta acaaatcttt       420
     gcacttaaac aaaattaact atgtaggcta aggggccgat cacactgaat gtgctttttt       480
     gcgctgaggc gccttttttg aatgatttac taacagcagc aagcattttg catgctgctc       540
     atgcaatctt gcgtgcctcg ggttttgacc cttgcgctgt gcgctggcag ttgaaaaaag       600
     tcaactctaa gtggaaaaaa gcgtgataca tcactcacat gtttttcatt ctccactcaa       660
     atgaaagtag aggtggggtt tccgttgagg tgcctgcagt gtttgtgttg tcaagacaac       720
     tatggagact tttgaagatg gaggagagac ttgtggttgc tgttttgagt tatccagagc       780
     tgtatgactt ttcaaatctt gaatttcaca atattattaa ataataaagt tatatttata       840
     tcaacagcaa cactctcaca gaataccagc tgattcaaat gttgcctaaa aacgtaaaaa       900
     atcctaccac gcttcttttt tcttgtcaac aaaaaatgca gtgtggtgcg cctcgtgttt       960
     ttggaacata aatgcgcatt tagggtgatc ggcccctaaa tgatgtattc agtgaagtgc      1020
     gtacaacacc gattccttaa ccacgaaagt aaaggagtaa agagtataag taaagtaaag      1080
     agaaagtaaa gaaactgaat ggaggaagct cattgtttat cctcgttttc tcgccagtga      1140
     agcgtgcagt ttttccactt acaaagtccg ccatgtaaat agcaaatgtg ccatggcgcg      1200
     acacaactga ctcttaaagg gaatggcaga tgaaactctg attggtttac gttttgctca      1260
     aaacacaccc ataactcatt aagagaataa gcaaccctct tagaccatgt gccagtgtgc      1320
     aaagcatatt tttccatctt tcaaatagca aaagtggatt cagacacact cttagggctc      1380
     tattttgacg gtcaatgcgc aaagcgcaaa acgcagggcg caaatgcttt cagggcgtgt      1440
     caggacgcgt ttttgctaat ttaaggacgg gaaatctgcc ttgcgcttcg gcgcatgcta      1500
     aaagggttga gtttattttc ttaatgagtt ataggtgtgt tttaagaata aaccaattag      1560
     agactcatct cccattccct ttaagagtca gctgcatcgt gccaagagcg aattcgctat      1620
     ttacaggacg caaagtaagt ctaagtggaa aaaatgagca tttcacaagc aaatagttaa      1680
     cagttaacag ttttttttta acagaaaact gttaaacaga gcatctactg cgtgagaatg      1740
     agagataatg gatcactttc actttcgctc ttggataggg aaacttttac gcacagacat      1800
     caattagtct ataaataaat acttttgttt gtaaagctca aatattcgtt tcaaaactat      1860
     ttctaaattc agttctaatt tccagcaaac gaataaatga ataataatag caaaatgtgc      1920
     tcaaaaacct gagttatatc ctaaaacaca tgctttgccc catatggtct aaaacctgac      1980
     aggtgggcaa atctaagctt gtttttaata aaacaaatat aaatatggat ataataaata      2040
     atactgctaa taataataac aatatacaaa agcaaattgt taggaatgag ctgaaaaagc      2100
     cacccgagat gaagaagaca taaaagcagt ggtttttcat atttatgtag gctataaaat      2160
     aatatgtttt gtaatattta aatcctttat atttatattc tatatctatt cttattatat      2220
     catatatata tatttcctta atatttacat ttttcatatg taaagatatt tgcctattgc      2280
     tctcttgtgc gtattaagca gtgcgtaagc gaggcgcaac tttgcgccgg agtttagacc      2340
     gggttagttt tggtctaatg aaaaatctat tatagattct caaaatactc aataacgcgc      2400
     cagcggtcca cctcagaacg ccttcctttt tagaccagaa cgcctatgga cgcaaaaatg      2460
     aacgctaatg catttgctat ttaaacagcg tagtgcaacg ccttaaaacg actcttgcgc      2520
     caagcttaaa ctaccaaaag actattgcgt cacgccttgc gccacactgc gccgggtgta      2580
     tgatagggcc cttaatgctt ttgctccatg ccctttagac tttgtgccta gaccattcaa      2640
     atagagccct acatttttgc aaaaccacaa agacatactt aaacatatgt ttgattgcag      2700
     tttgtaggta agaacaccat agggaaatat gacaccaaca acttttgctt cttttcacac      2760
     taatgatatt taccgaaact tataatcgac gaataaaaga atatgttgtg cagttctttg      2820
     cacaacacca aacaaatacc acaaaacact gacgtaattt aatctgtatg aagatctctc      2880
     ttcttgtaga tgtgtacaat aaggacgtgt atctgaaaca caataaaaag tagtctaagt      2940
     aacacatttc agatttacaa aaatgtatat agcgccttct agtggatttg tcatctgaaa      3000
     tgtgcattga aacatatttc taataagcct gggctggaac tatgctgtta aatcttaata      3060
     atttgcatat ctttcatacc tcttacagca tctgcagaca acagtgcagg cgctgcaggc      3120
     cgagctgcgt atccagcgtg acttgaacca gcttctccag ccgcccgggg agcctctggc      3180
     ctgcgaaccc agtgaggagc aggaacgtca ggctcgagag ctcttcttgc tccgccgtac      3240
     gctggaggag atggagctgc gcatggaggc ccagcggcag acgctcgttg ctcgcgatga      3300
     ctctgtcaaa aagctcctgg agatgttgca cagcaagggc ccgtcagcta aagccagtga      3360
     agaagatcat gagcgaacac gacgcctggc agatgctgag atgcacgcgc accacctgga      3420
     gaacctgcta gaacagcggg ataaagagct ggtggctctc agagaggtgt gtgacaactg      3480
     gagatgaaac atacattaca aaatattaca tttatatcat atacaagtaa cagtgattat      3540
     ttggtctaaa tttagctttg aaaaatattg aactctttag cttgaaatcc aaaatccctc      3600
     tgttattttt atatttttag atgtttttct tagaccgttt cttaattttt gatatacatg      3660
     tcaaaacaga atattaaaag tctgatttat tttgagtttt agaaatcaac tatttgacat      3720
     actttttgac aaagtgaagt ttattcataa actaattttg agaggataac gtgcttatga      3780
     ttgacacggc tggcccagag tcaagctaat gtacgaacca ctaatcagac tattcctaac      3840
     ccagtataaa taaccaaata tcttaccttt agtcatcttt gtctcgaaga atctcccctt      3900
     ccaccccttc tcctcctctt ttcaacaggg cagcacgacg gccctgtggc tagcactgcg      3960
     gcctcacagc aaaaaatgcc tctggctcgg gtatccaccc aaccagacag catttttgtg      4020
     tggagttcat gttctccccg tgcttgcgga gatctaccca agctcaaact cccctctcgc      4080
     cctgtaacgt gagggagctc cgggctcgag gatcttatga gctcagggct ctctcccggg      4140
     acagcatgcc aaactagctt attaccaatc atcagcttag tgtgaactct taaaaggcag      4200
     tttagatgct attataacag aaactaaatc aaactattgc ccaattcata tactatccat      4260
     cctaaatagt atttgaaaat agaattagtg tgtcccaaac tatagtttgt tgaaaagagt      4320
     atgctaaagg tttccggata ttttactatt tccagtaaaa attcaaagtg cagaactgtc      4380
     cgtactcgaa ctgctaatac ataatgctaa tactaacgaa aatacattgc gcgttggatg      4440
     tgaatttgat tagaactaca aagtatggaa aaacgtgtaa ataaactaca aacacggcgg      4500
     acacacgaga taaaagtcaa gtcaagaggc ttcggtaaat ttgtataaat gactattaat      4560
     taatatctaa ctaactggaa aatatttaaa tcacattttc tgtgggcgac gcagagcacg      4620
     ttcgcctaac agcaagaagg tcgctgggtc gctgattcga tcctcggctc agttggcatt      4680
     tttgtgtgga gtttgcatgt tctccctgcg ttcgcgtggg tttcctccgg gtgctccggt      4740
     ttcccccaca gtccaaaaac atgcggtaca ggtgaattgg gtaggctaaa ttgtccgtag      4800
     tgtatgagtg tgtgtgtgta tgtgtggatg tttcccagag atgggttgcg gctggaaggg      4860
     catccgctgc ataaaaactt gctggataag ttggcggttc attccgccgt ggcgacccca      4920
     gattaataaa gggattaagc cgacaagaaa atgaatgaat gaatgaagga acattttccg      4980
     tgttatattt caactgcaag aactatatga acttgtttaa tgacttattt ggaagatgac      5040
     ttgtaaaagc ttatttatcc aaagacctga tgagatttct atgcatgaaa gtatcacaaa      5100
     tgacagatta atctgctgct gctgaatccc caatatagta ggtaaataaa tatgacagaa      5160
     atgtggatga tgtgtcgaga tgtttgacag gagacgtaac taagcaacat aacaatagcg      5220
     aggaagtagt attatattat tatatgcatg tcctacacaa aagagtacat acttttaggg      5280
     ggtagtataa gtatgaaaaa tgggacactg catatgtaaa ttacttgtaa ttattttatg      5340
     taaatctatg aaactaaata aagagagcac gaatatctgg ttttggcagg agcactttta      5400
     gcttagcgta gcatagatta ttgaatcaga gtagaccatt agcatctcgc acaaacttta      5460
     aaaaaaaaat ataattttat gtatttggtc ttagaggacg atgtaaatac agaaatgtca      5520
     agctttaaat agaaaaatga tctaaacttt gaacaagatg ctaatggtct aatctgattg      5580
     agttattttt gctaaactaa gctaaaagat tactcgtcag acccggtgat tggctgaata      5640
     gtttaaaaaa tgattgagtt aaaactcaac tgtttaactt gtaaaatgag cctatttgca      5700
     caaaagtgag gcgttccttt acatataaga aaaaacaata gaaagaaatg tctaattctc      5760
     atttagttta acctgatgtg ctaaaacaat tgaaaactgt ttaaagatgg taataatttg      5820
     gcaaagattt agttactcaa tactctctag tgtctaatgt agtctttaaa tgttttgatt      5880
     acatttttat ttgagaaact aactttttta atttacatat atatttatat aaaatacaat      5940
     ctaataaatg agaatctaaa gtgaattttg caataacata gtttagataa cttgaataac      6000
     atggttgaca aacctcatac aaaatggatg acaaataaaa ccactcatac aatattaact      6060
     acatccttct gaagatgacg accaggtttt ctgaaggtta agcacctcct ttctcaggaa      6120
     aagtacaaat aaatgaaata ttaaatatct aaaatatctg tagtgaataa acaacatcac      6180
     aacatcctgt cacacaataa aggcatctgc tctctttaaa gcgtaaaaat taggatttgt      6240
     aattgaacta gatagcagaa cacatttgca ctcgaaagca gcttctgcag tgggatagac      6300
     acaggcaaaa gttaaaaaaa caaaaaaacg ctgctctccc ttaaggtatg atggcgtatc      6360
     tgagagctct atttctggta ctggtgtgaa gaaagtggca aacatgtgtg ttaaattgca      6420
     ggagctgcac cgccgcctcg aggggacgcc agagaccacc aaaacaaaag ctcttcagac      6480
     tgtcattgag atgaaggtaa tactttagcc cctgttttaa tactgtttat ttatactgtt      6540
     tgcttatctt ttgtctggca gggagggaaa ataacgttct gtcttcactg atcaaaataa      6600
     actacagtcc catgaaacat tgtgaacgat ctaatcaaat caaaaagatt catgggagtg      6660
     ggcggagcta aagatctaat ttggcacaat tttccttata tgacttcaat tggtttcatt      6720
     ttcatcaaaa gtatatataa ttgattagca ttgtaaaagc aatgggttgg tttttcgagg      6780
     tttttctgtt tccctttgaa gaaaatcaat ggagttttgc ttatgcaact cgactgtcgc      6840
     tctctgttta ggctattaaa gggatagttc acccaaaaat gaaaattcac tgaccaatca      6900
     ctcacactca agcagttcta catttttagt aaggaaatgt gcacacagaa tgcgattttt      6960
     tctttccaat gcgctacttt tctattgttt tctattgtaa acatgcgtgt ttgactgtta      7020
     cattaacacc attcgcgcca cacacaatct ttaactttca cacgcagctc taaaagcaga      7080
     agagctgacc attcagaaga gctttgaagt ggggcaagct t                          7121
//


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