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EBI Dbfetch

ID   CR450705; SV 8; linear; genomic DNA; STD; VRT; 4708 BP.
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AC   CR450705;
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DT   24-MAY-2004 (Rel. 79, Created)
DT   15-FEB-2005 (Rel. 82, Last updated, Version 10)
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DE   Zebrafish DNA sequence from clone DKEY-150P14 in linkage group 11
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-4708
RA   Henderson C.;
RT   ;
RL   Submitted (15-FEB-2005) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   clonerequest@sanger.ac.uk
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DR   MD5; 7ad97f4d3ea6e6a45d924183e79e652b.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   During sequence assembly data is compared from overlapping clones.
CC   Where differences are found these are annotated as variations
CC   together with a note of the overlapping clone name. Note that the
CC   variation annotation may not be found in the sequence submission
CC   corresponding to the overlapping clone, as we submit sequences with
CC   only a small overlap as described above.
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one plasmid subclone or more than one
CC   M13 subclone; and the assembly was confirmed by restriction digest, except
CC   on the rare occasion of the clone being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Repeat names beginning "Dr" were identified by the Recon repeat discovery
CC   system (Zhirong Bao and Sean Eddy, submitted), and those beginning "drr"
CC   were identified by Rick Waterman (Stephen Johnson lab, WashU).  For
CC   further information see
CC   http://www.sanger.ac.uk/Projects/D_rerio/fishmask.shtml
CC   
CC   DKEY-150P14 is from a Zebrafish BAC library
CC   VECTOR: pIndigoBAC-5
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FH   Key             Location/Qualifiers
FH
FT   source          1..4708
FT                   /organism="Danio rerio"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="DanioKey"
FT                   /clone="DKEY-150P14"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 4708 BP; 1133 A; 1154 C; 1121 G; 1300 T; 0 other;
     ttcatcaatg cattgccaga gggggtcaat ggggctatat atatccaata tattatattt        60
     taacgaatta cccattattt ccaggagatc tttttttgat ggagactggt ttacttgtcc       120
     aatttttgaa aacttaactg agtagcttaa attggccttg agtgtttatc gatgtttaaa       180
     gtggtgacct tgatgtattg cagtatttat tttactttac actgtgatgc aaaaatatat       240
     attttaattt atatttttaa atattattta gttttgtttt gtattgtcca ttattctttt       300
     aataccactg actttattat atgaagaatt ttttaaaaat gcttttattt agtatcctat       360
     aaaatttgcg tgaactggat gttgttcggt gtactttaaa ctgaatattg agtggggggc       420
     ggagcttttt tttgtgcatt gttcactcat agaaatctaa taagagagag gtggttaaaa       480
     aatatattgg ctgaaggcat caaactgaca tcaacagaga aggaccgcca ttcaaagatg       540
     gaagcaaatg atcagacttt gattgaagat taccaaaaca aacattttgt ttcagtggat       600
     taacttgcat ggatgaattg ttcacccaaa gaataacaat gtgtgcttgc aaaataaata       660
     tttaaacaat taaactagga tttcacacag actgtagccg cacaaatata taattttttt       720
     ttcatcaaaa tatccaaaaa catgcaaagt gtttgcatgt tttgtaaaca tacattatcc       780
     caaatgtttc aaaaatcttt gtgacatgga tcatatcctg tatcaactta aaaatgttgt       840
     ggattttatt agactatatg ttttataact atagaactaa aacataatgt aaatagaatg       900
     aataaaaagc gctgcttctt attctatgtg atcttgatgc agaagaagtt gactgtggca       960
     taataaaagt aaatgatttc agaatgtaca tttttgggtg acttaagact taaattttca      1020
     aaaacaaaac acatttacgt tggtctctta gctcagtgag aagcaccacc acaatccagc      1080
     ctgtgatctc ccgctgctca gctgtgcttg tgatgacttt gtaaccagac gtgattactt      1140
     tgctgtgacg cttctgtctt tgaggccgct gaatgcctca gtctctaatg cttagcccaa      1200
     agacatgaat agcccttcac atggtgttaa acagactata atctaagtct gaattcatct      1260
     atagagtctg agtctatgct tcaggctatg tattatattt cttcgactga attcggtttg      1320
     gaaatgttta gacaatagac agatttatga caacagatat gatttcaaat tatttattat      1380
     aaatcatttc cacaatgagc agcagtagta aaagtcagtg aaatacttag cattgacatt      1440
     taagtgagtt atggttatta gttttgcagg gtctttattg aagcatggct cattaggctg      1500
     attctctagg gttctgctgc tggaatgcaa gactttctta tgtggcatga tctgtgatgc      1560
     taatttgatt tgtgtgggaa ctgtggtgtt tttattttct tttattaaat ttgttctgtt      1620
     ttgcttttgt tcatgatctt ggccccatta tttattactt aaagggcatg ttcactcaaa      1680
     aagcaattgc accagctcat tcaaagacca gaaacgtatc aaaagacata gtcaacatcc      1740
     atgtgtcttc aacaattcaa ttagattatc aagctaaaaa ctacatgtat tttcgtgtgc      1800
     acataaaaaa aatgactatt gctccccttc ggttggggaa cttcagtgct ataagatttg      1860
     atcttggaaa atccacgtat gggaggattc ggttcagaag ccgcttgtct gaaagagtat      1920
     tgaatgggcc aatggagcaa tgaattggca gcgtaagggc ctgcggacct cccgctcctc      1980
     caagcgctcc atccaagctt cgggcagggg aagcgatccg tctaacagat ggtagccctt      2040
     acgctcgaag acaccggaga ccagacgtcc accgcagcat cggagggtgg gctttcatcg      2100
     gagggtgggc tttcattgtc cgatgatgat ccagacctgc tcgcaccctc cgggcaggtg      2160
     agcactgaca aaacgaatcc tgaaacggac attttagccg tgctttcccg ggctgctacg      2220
     gtcgtgggtt ggggatggtt tatccctcag ctccgtggcc ggaccgacta gaggggcatc      2280
     cccttcttct cggcagccag ggggaatgtg gcgattcctc aggttgagtg cgcgatggcg      2340
     gtcaatccgc ggtccgcctc gtctcccatc caaagcttgt aagttacctg cctccctcgg      2400
     agctagagct tacaaggctg tgggccaggc tgcttccgcc ttgcatgcga tagccactta      2460
     ccagcgctac aaagcgcagg cgctggccga ggtgcatgag ggtgggtcca acccaggctt      2520
     atgagcttcg caccgcagct ggctatgctc ttcggactac taagtccact gcgtgtgcgt      2580
     tggggaggac gatgtccaca ctagtgatcc cggagcacca ctcctggctg atatgcgcaa      2640
     ggtcgacaaa gtccgctttc ttgacttccc catatcccaa gctggcatgt tcggcgacac      2700
     cgtctgtgaa ttcacccagg aatttgaggc ggtgagagag cagtctgatg ggtaatgtct      2760
     tatcgacggg ttcgtaagcc cgcttcgcct gccgtgccat ccatacctgc tcctcgctga      2820
     aggtgcccgc ctacgagagc tgcaccgccc ccgcacatgc ctctggtgaa gcgagcgcgt      2880
     cgagcacctc ggaagcaggc agtcccccct gcccagaacg ccgctaagtc cggcaactga      2940
     ccgcgaaacg tccctgggac aggccatatg gagaagaggg aacttgctct ttcccagctg      3000
     gagggcaggg ccccatttcc aacggcactt tttactgcca tgaaaacatc atgaaagagc      3060
     acttttccac ttccctggat gtgacagccc gaaatctgcc agtctgggat gctatgcttt      3120
     ctagcttgca ggtttggtgc gtttcaccag tggctcatga gcgctgggag gacggtctcc      3180
     tttctcccac ccctcgagcc tctcctctgg ggcttgggtg cggagtgaga gcaaatctct      3240
     cacctccagc tcttccgtgg gacccacgtg cttcccggat cagcacaccc actccgcgct      3300
     gccccactgc tggtatgtca gcgattgtag cgatgagtcc attagcgaga gctctgcgtg      3360
     cctggttagc gtgggccagc ccttcgcggt ggctcatacg cacaatcaga ctcggctatg      3420
     cgatttagcc ccccaagtca ggggtgtgta ttcaccaggg tcagccccct gtccgcccct      3480
     gtcttgcgag agaagattgc tgtcctactg gcggaggatg caatcaagcc gctccctcca      3540
     gccgagatgg aaagcgggtt ttacagtcca cacttcatcg tgcccaaaag agcggtgggt      3600
     catggccaat cctagatctg cgcgttttga accgctgtct gcacaagctg ccgttcagaa      3660
     tgctcatgca gaatgcctct aggacaggcg tctagtcttg catatccagt tgcattggca      3720
     tatcgcctgg agctgttggc agtgttcctc gttctccacc atttttttcc ggtcctagag      3780
     cggcaacacg tgctggtcat gacggacagt acagcagcgt tggcggatat caacgcggat      3840
     gcattctcgc cgcatgtctc tgctcgtccg ccatctgctc ctctggagtc atccgcggct      3900
     gaaatcgatg cacaccattc acattcaggc aagctcaacc gtgcagccga tgcgctctca      3960
     cggcagcctt acgtcctgga gaatggaaac tccaccccga gtcggttcag ctgatatggg      4020
     cacgattcgg ggaagcccag atcaatctgt tgcttccccc gagattgctc attgccagtt      4080
     gttcttttcc ctgaccgagg gctgcactgc actgtctcac agctggcctc ggggcatgcg      4140
     caaatacgcg tttccccagt gagcctgctt gcgcagttac tgtgcaaggt cagggaggac      4200
     gaggaacagg ttgctggttg cgccccactg gcccaaccgg acctggatat cagggctctc      4260
     cctcctcgcg atagccctcc cctggcagtt cccttcgtga gagcacctac tctctcaggg      4320
     acaggacacc atctggcacc ctcgtcaatc tttggaggtc cttagatgcg aggaagactt      4380
     aggtaacctc cgattgcggt ggccaatacc gtcactcggg ctagagcctc ctacccgaac      4440
     gcgcctatgc cctgaagtgg agtctattca ctgaatggtg cgtccctcgc agagaggacc      4500
     cccgtaattt gccagatcag cgttgtgctt tctttacgct gagagtagct ggagagcagg      4560
     ctgtcgccat cgacactcaa ggttacatgg ctgccatctc cgctctcatg acgcggtggc      4620
     tggcggcact gtgtgaacgc ataacctcat catccggttc ctcaggggcg ctaggcgaat      4680
     taatccaccc cgcccactct catgccct                                         4708
//


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