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EBI Dbfetch

ID   CR318642; SV 8; linear; genomic DNA; STD; VRT; 10590 BP.
XX
AC   CR318642;
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DT   01-MAR-2004 (Rel. 79, Created)
DT   19-JUL-2004 (Rel. 80, Last updated, Version 9)
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DE   Zebrafish DNA sequence from clone DKEY-28N22 in linkage group 18
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-10590
RA   Phillimore B.;
RT   ;
RL   Submitted (16-JUL-2004) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   clonerequest@sanger.ac.uk
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DR   MD5; 18ac7c11fc212ba0f85735387129ba34.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   During sequence assembly data is compared from overlapping clones.
CC   Where differences are found these are annotated as variations
CC   together with a note of the overlapping clone name. Note that the
CC   variation annotation may not be found in the sequence submission
CC   corresponding to the overlapping clone, as we submit sequences with
CC   only a small overlap as described above.
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one plasmid subclone or more than one
CC   M13 subclone; and the assembly was confirmed by restriction digest, except
CC   on the rare occasion of the clone being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Repeat names beginning "Dr" were identified by the Recon repeat discovery
CC   system (Zhirong Bao and Sean Eddy, submitted), and those beginning "drr"
CC   were identified by Rick Waterman (Stephen Johnson lab, WashU).  For
CC   further information see
CC   http://www.sanger.ac.uk/Projects/D_rerio/fishmask.shtml
CC   
CC   DKEY-28N22 is from a Zebrafish BAC library
CC   VECTOR: pIndigoBAC-5
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FH   Key             Location/Qualifiers
FH
FT   source          1..10590
FT                   /organism="Danio rerio"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="DanioKey"
FT                   /clone="DKEY-28N22"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 10590 BP; 3511 A; 1805 C; 1921 G; 3353 T; 0 other;
     tttttcatac aaatgtatta ttatatacat tttattctaa aagactttct gtatatttgt        60
     atttttctga ctgtttgcag tatttttaaa attatgaagt aataaaaaac actctaatat       120
     ggctaaaaaa ccctatttgg aacaagactt taaccaatgt tcagaatttt gtgcaaaaaa       180
     acgtatgcta attagcacat atttaatgag ttgatgcctc gtttacattt ttaaacttaa       240
     gatttcataa aacttaaaaa gaaaaagttt ggaaatcttt atataatcaa ttaaccgagg       300
     agttatggag attacaatta atcctttttt accctgttca cttgcagttt cttactgcaa       360
     aaaacattta tcagtgtaaa tatattggtt actatttttc aatatatctg ttcaatttca       420
     aggcagcgac ttgctcgtga gtgtgaatct gggattgatg tgaaagatgt acagacggag       480
     agagtgcgtg tgatgaacaa caacaacccg cacgtggtgc ttagaaacta catcgcccag       540
     aatgcaatag cagcagctga aaatggagac ttctcagagg tgaggcttca ttagcttgtt       600
     attcatagct tctaaattgt aattttagtt taacagggag acggttatca ctaaatgttt       660
     tactttttct caatgttgat attatgttaa aaaatgtttc ttaatcacca aagatccata       720
     ttaaaaagat ttctgaagat gtcaccacaa ttacaatttt ttaatacttg tgttaaatca       780
     taatatttta ctgtttttga ttaggttact ctaacttttt ttttttattc ttttgaaaat       840
     acttattcga tcacaattac tctgtcagta ggttttgtta agactgttag tgtgggtgcg       900
     tattccgcac actatgggga ccaaacaccc cataatggct atgtaaaaaa agatttttgg       960
     aaattgttgc aaatttaata aaaataaaaa acctgaaata tcgcatgtac ataagtattc      1020
     acagcctttg ctgtgaagat ctaaattgtg ttcacgtaca ttatgttatt actgatcatg      1080
     ctttagatgt ttcagcagct taattggagt tgacttgtgg taaattcagt tgatttaaca      1140
     tgatttgaaa aggcatacat ctgtctataa ggtcccaggg ttaacagtgc atgtcaaagc      1200
     acaaaccaag tatgaagaca aaggaattgt ctgtagacct cagagacagg attgtcttga      1260
     ggcacaaggc tggggaaggc tacagaaaaa tgggccttag tcagggaggt gatcaataac      1320
     acgatggtca ctctgtctga gctccagcat tcttctgtgg agagaggaga accttacaga      1380
     aggacaacca tctgtgcagc aatccatgaa tcaggcctgt atggtaaagt ggccaaacag      1440
     aaggcaacta aaggactctc agaccataac aaacaaaatt tctttctggt caaacaaaaa      1500
     atctctggtc tgatgagact aaaattgaac tctttggagt gaatgccagg tgttttattt      1560
     ggagaaaacc aggcacctct catcgccagg ctaataccat acttacagtg aagcatggtg      1620
     gtggcagaat catgctgtga ggatgttttc agcagcagga actcgaagac aagtcaggat      1680
     agagggagag atgtacagag acatcctgaa tgaaaacttg cttcagagtg ctcttgaccc      1740
     cagactggag cgaaggtttg tctttcagca aaacaatgac ccaaagcata cagccaaaat      1800
     atcaatggag tggcttcaca acaactcggt gaatgtcctt gagtggccaa gccagagccc      1860
     agacctttat cctaaggaat atctctggag agatctgaaa atggctgtac accgtcacct      1920
     accattcaac ctgatagagc ttgagaggta ctgcaaagag gaatgggcaa aaattcccaa      1980
     aagacaggtg tgccaagctt gtggcatcat attcaaaaag acttgaggcc ataattgctg      2040
     ccataggtgc atcaacaaag tattgagcaa aggctgtgaa tacttattta atgcaacaat      2100
     taaaataatc tttttataca ttgttattat ggcgtattgt gtgtagaatt ttgaggaaat      2160
     aaatgaattt aatccatttt ggaataaggc tgtaacaaaa aaatgtggaa aaagagaagt      2220
     gctatgaata ctttctgcat gcaatgtaga cggatggatg gatagatgca tagatctcat      2280
     aatgcttcaa aatttgtatt caaaactttg tctcaaatca ctttaggtcc aaagagtcct      2340
     gaaagtgctg gaaaagcctt tctcagtgca ggaaggtctt gaacagccag gttggatggg      2400
     aagaggagga gcagctattc ctggagaaag agacgagact gaagaagaag ggagtaatag      2460
     ttcaggagca ggggctcgag ggcttgtccc ttatgacagc aaaccccctg tctgggccaa      2520
     tgagatctgt gtcacctgat catcataaaa ccttcgtgac aactaacctg ctcattaaag      2580
     cagaataatc ctgcagaagc tggttaggcg tcagcggagg tattaaatga ggtattaaac      2640
     tcctgtctac cagttcaaaa atgggtaagg tgtaagtgaa atgtgactgg tttttaatga      2700
     tgactttgac cagcagtctt tgcatgacag gtctcagtcg gaaagacaga agttaagcct      2760
     ctctatgtat aaaatgactt ggatttgaat gtagaaggag ctttgaaagg aaacgcacaa      2820
     gccattgagc aagacagctt aaacgcacaa actggtgtaa ttgtttactt ggagagcatc      2880
     tttttcacac cagattaatt agttgcacta atatgtagcc ctgttttaac atacaatcca      2940
     ttcgtagctg gaacagtcca ttgtacaaca attactttta aatagtaatg aactatttaa      3000
     cactttattt ttaataattt tctatataat caataatttt cttttttccc ttttctgaaa      3060
     ccccctttca aaaacacgat aaactgtgac aacattattt atatcatttt tatgaacttt      3120
     ccggattaat atgtgctatt tctatttcta taataaacgt agcaaatttc actgtgttct      3180
     aatcctttta tccaggatta cttctgtgag tttttcattt gtaacagctt ttggaatggg      3240
     agcagatttc attgttttca tttagggagg aatgtctttg cctgagggcc agtacttggg      3300
     taacatgtta acacaggttc tggtgttcac cttaaagaaa ttaaggcaga ttttaactgt      3360
     gtcaagtatg aaacttgttg catatagctg gagaaactag tattctgttt catgttgtaa      3420
     atgaccaaat gccatgggac tcccaaagcc ctcgttttaa tggttttcaa ggctgtggag      3480
     gaacaaacag gcagctgttc tcacgtttaa tgaaggacga acatgttctt ggatattatg      3540
     tcttagtgac gcaagtcatg tatggaaagc tgcttttaca ttaatcccct aaaaagagct      3600
     aataaatttt tatggtacta atacttttat tacctgtaaa caattccaat ggtgattttt      3660
     attaatggta gtagcttgtt gaagagagtt agacaaggat tttacaatgt ttctgaaaag      3720
     tcaagtgtcc aggtttttgt caactgttac gatagcgtta gaacattcta ctatactccc      3780
     attataacat atatatatat atatatatat atatatatat atatatatat atatatatat      3840
     atatatatat atatatatat atatatttac actgaaaaga gtgtaaataa tgttcaactt      3900
     aatttgtttg tttaaattca gcccaaataa attgtttaca accacttaac gtaaaaaatt      3960
     tagtaaatcc aaggaatcat ctttgaataa ttttttttca gtgtgtatat atatatatat      4020
     atatatatat atatatatat atatatatat atatatatat atatatatat ggatttatat      4080
     acacatttat tcattcattt tcttttcggc ttagtccttt attaatctgt ggtcaccaca      4140
     gcagaatgaa ctgccaactt atccagcatg ttttatgcag tggacgcact tccagatgca      4200
     acccatcact gggaaacatc catttacaca catacactat agacaattta gtctacccga      4260
     ttcacctgta ccacatgtct ttacacttgt gggggaaact ggagcactcg gaggaaaccc      4320
     gcgcaaacac agggagaaca tgcaaactcc acacagaaat gccaactgac ccagctgagg      4380
     ctcaaacctt ctttctgtga ggcgacagca ctacctactg caccactgtg tcacctataa      4440
     atatatatat attgtatata tctgacagtt gaagtcagaa ttattagccc ccttcaaatt      4500
     tttttcttct tttttaaata ttttccaaat gatgtttaac agagcaagga aattttcaca      4560
     gtatgtctga taatatttta cttatgcatt aagtcttatt tgttttattt cggctataat      4620
     aaaaacagtt tttaattttt ttaacaattt agggacaaaa ttattagctc ctttaagcta      4680
     tattttttct caataatcta cagaacaaac catctttata caataacttg cctaattacc      4740
     ctaacctacc taggtaacct aattaacctt gttaagcctt taaatgtcac tttaaactgt      4800
     atagaagtgt cttgaaaaat atcttgtaaa atattatgta cagtcatcat ggcaaagata      4860
     aaaaaaacag ttattagaga tgagttatta aaactattat gtttagaaat gtgttgaaaa      4920
     aattagctct ccgttaaaca gaaattgggg aaaaataaac aagcggtcta aaaattcagg      4980
     gggggctaat aattctgact tcaactgtat atataccttt ttgtcatatg gctcactggt      5040
     caggtattca tccgctctaa atatcaaggt gaaagtcatc atagcttgcg tagaacagac      5100
     ccagctccca aaccaacttt gagaatagat aaacgatgat atttctattt ttaagagcct      5160
     cgcactaacg cattaacggc tgaccactaa tatataaata ttcagcttat agcaaaacct      5220
     tcatcattat ttcttggtgt catcctcatg tatgttgact attactaatg taacattacg      5280
     gacattttaa aataacattc acaatgtaat gtaatgtgtt ctatatagtg catttatcgt      5340
     gtatggccat atacccaaag cacttcatcg gatttgaaat cacctcagag agtgaggacc      5400
     tcagtttaac gtcttgtcta aaagacggca ccttcactat ggggcattag gactcacaca      5460
     gaccataggt tgagcacccc ctgctggcct cactaccatt tccaacagct gcctggtttt      5520
     ccattgtggt ctcagccctg cttagcttca gcaagaaacc agccttgggc tgcaggtaga      5580
     tatggctgtg gccattacca tagccccttt cacacattca gacctttccg gaaaattgct      5640
     ggtaatgtgt gaaaaggccc tttttgaaaa taacggtaaa ttcgttctgg caattttctg      5700
     gaaagagaag ttgtaacatt accagtaatt tgccagaatg ccgctctgtg taattttatt      5760
     taagctttaa acaaaaaaag tgaaaccatc aacagaagac tgaccacttc tatgataaca      5820
     aatacaagcg cagccgttta gagctgattt ctgattaatg atgtctgaat ttacggttgt      5880
     tctggaatgg atgtgtgaac agtctttttc agaaaaatca tggaaaatta ttgcctgtgt      5940
     gatcatgtgc tttgttttat ttatcggtta agtcgttcca gtaattttcc agatatttac      6000
     tggcatcact gtgtgaaaga ggctaataac taatgatata gaaaaaagta ctaaatttga      6060
     agaataaaat cgatttatca gctaggtaat gcaacgactt caggttaaaa cggcttgcca      6120
     tacagaccgc cacgccggag tgggagcggt tacgcgcaca tgtacaactc aagaacgcgc      6180
     acaggtagat cgctattatc agtgttgagg taaacctaga aatcacggcc tcgggactcg      6240
     aagtagcgcg tttaaagggc tattcgacaa tatgacagcc cgatcgagac ctggctattt      6300
     tcgacaggag ataaataaaa caatctggga ggtgccggat agatacaaag atctgaaaca      6360
     ggtggggacg ggggcatatg gtacagtatg gtgagtgtgc cttcattttc tgtacttcct      6420
     ggaaagattc gtgcttaaca ttttaagaac cgtttcactg tgacagaact gtcagtgtat      6480
     ccgggatgtt ttcaaaacaa atgatgtgga aggaagtagg aaagtagcac aagtgaaagt      6540
     attagtttat ttatatacat attttcgttt tgagctgata caagttaatt atttcccagt      6600
     cagtctgcgt tttatagaga tacacaacat taacaatact taaattgaat attaaatgca      6660
     attgtctgct aaatcacgat gtgtagaact cattgcatta ctttgaggtt gataattgta      6720
     agatggcagc tgttgaccag agatcaggtg aggatttatt gcatgttctt aagtttctgt      6780
     attttattta acatcctcag agttgtattt catagtacaa caattcaagt tttaatttgc      6840
     tatatttcta cgtagaaaat ggtttcaaga tgatagggta agtagagcat caaaacaata      6900
     taatgtaacc ctccaaaaac cctataaccc tgctttcttg gttcgttata tatatatata      6960
     tatatatata tatatatata tatatatata tatatatata tatatatata tatatatata      7020
     tatatataag cacaaatatc atttaatata aatttgagga actgttctgc ataagctgtt      7080
     tttaagatat tttaaacatt ataataaaca ttgtatgttt tatatgtatt tagcactttc      7140
     ccaaaataat aaaaagttgt acaaggaagg taaatttgtt gcatgtatta ttgacataat      7200
     aaatgcaaat atcaaaatgt tgtaacttga atactatatt tgggttcctt ttaagaaaat      7260
     ttcccttgtc cactcagaaa atccttgtgt atatacaatc acgaaacata tggacaatag      7320
     atttcttttc catgcaacaa aaatcacagg aataatcaat attcaaattt ataaaatctc      7380
     tctaaaacct ctttagctgg atttatacaa tgtaaaattt gtttttataa cttcttttat      7440
     ggcaagtcgt tttgactttt attcattttt cagaatttat tcatttaaaa aaaatgttat      7500
     atcatcaatt aaatttttga tatcaacaat tacctttttg atatcaagaa ctgaattgtt      7560
     gatattaaga attaaaattg ttgatatcaa gaataaaatt gctgatatca agaatacata      7620
     ttctgagaat gaataaaagt caaaacggct tgccatactt cttttacttt tgttatttat      7680
     gcaatatatt tcatgagaat gccaagcttt tttcccaatt tagattaatg aatacattgg      7740
     tcctttttta gttattatac ataattgtat cgactgttat gatatttcta atatatttat      7800
     tagtataact ttaataatat taatatctcc ttaaaaaggt ttgcttttac aagattcatt      7860
     tccatactct cttataaaat aaagaagttg ttgagatgtg gtatcaaata caatagcata      7920
     ctcttttgga gtaactggaa aaccaaattt atctaaaagt tcactgcaac ataataaatt      7980
     accatttaat tttgaaattg tcaaactaat tcaatatcat tttcatacaa attttggaac      8040
     tgccgctatc cttaggtacc aaccattgtt caacaatgat gtttttaatc aattagtagt      8100
     attgatatgt cttctatgta cagttaggtc cataaatatt tgaacatcga cacatttcta      8160
     aatttttttt gctcaataca tcaacacaat catcgaaaaa aacatgcaaa catcaaaatc      8220
     aggtgaacgg tgtaggaatt aaaacagttt gcaaatgtgc ctcccacttg ttaagggtcc      8280
     aaaagtactt gtaattatcc catttacaat gaacagataa aagatccagg gttaatttca      8340
     agtgtgctat ttgcatttta attctgttag tcaactctca agatgagatc caaagagctt      8400
     tcactatcag tcaaacaagc catcattagg ctgaaaaaac aaaacaaacc cctcagagag      8460
     atagcaaaaa cattaggagg ggccaaaaca actgtttgga tcattcttaa aaagaaagaa      8520
     cgcaccagtg agctcagcaa ccccaaaaga ctctgaagac ctcggaaaac aactgtggtg      8580
     gatgaccaaa gaattctttc gcaggtgaag aaaacgccct tcacaacagt tggccaggtc      8640
     aagaacactc tccaggaagt aggtgtatgt gtgtcaaagt caacagtcaa gagaagacta      8700
     caccagagtg aatacagagg attcaccaca agatgtaaac cgttgatgag cctcaaaaaa      8760
     caggaaggcc agattagagt tctaagaaat ccttcactgg aacaacatcc aatggacata      8820
     tgtgatcaag atcaacttgt accagagtga tgagaagaga agagtatgga gaaggaaagg      8880
     aactgctcat gattctaagc actgaagcat ggtggtagta gtgatgtggc gtgggcatgt      8940
     ttggctgtca atggaactga atctcttctt tttattgatg ttgtgaccgc tgactaaagc      9000
     agcaggatga attctaaagt gtcaggcaat attttctgct catattaagc caaatgcttc      9060
     agaactcatt ggatggtgct tcacagagga gatggagaat gacccacagc atactgcaaa      9120
     agcaaccaaa gagtttttga agtgaaagaa gtggaatttt atgcaatggc caagtcagcc      9180
     acctgatctg aatccaatcg agcttgtatt tcacttgctg aagacaaaac tgaagggaaa      9240
     atgcccctag aacaatcagg aactgaagac agttgctgta gaggcctgac agagcactag      9300
     cataaaaccc agtgtctggt gatgtctatt cgtctcagac ttcaggttgt aattgactgc      9360
     aaagtatttg caaccaaggt ttaaaaagtg gaagtttgat ttataactat tattccatcc      9420
     aattactttt ggacccttaa caagtgggag gcacataggc aaactgttgt aattccttca      9480
     ctgttcacct gattcggatg taaatattct caaattaaag caaatctcat ttcatttgaa      9540
     attcattgtg tttggtgtat caagccaaaa atattagtaa tttgttgatg tccaaatatt      9600
     tatgaacctt actgtaaata aaatatatac aaaatatagc cctaaaatat tcccccatgt      9660
     tcatttgttt catttgcatt tgtttaaaag acccatgacc acgtctgtca gggaggacac      9720
     tcttaccatt cacatcctct ttctaaagcc tctttttgca tgtaaataat aatatgtatt      9780
     taaattgtgt gcatttacaa ctggtgattt actcctcagc tatgcattag accggaggac      9840
     aggggcaaag gtggccatca agaaactcca tcgtcccttc cagtctgacc tgtttgccaa      9900
     aagagcctat cgtgagctca ggctgctcaa acacatgaag catgacaatg taggacacca      9960
     aagattgaca ctccaacctg aggctcatga tgtgtggttt gtgacagcct ttctctcttt     10020
     gaatcggtgc aggttatcgg acttgtggat gtgttcactg cagacctttc cctagacaga     10080
     ttccacgact tgtgagtact ttataagcat gctgtgtagt ctgctggcag tttgaagaga     10140
     tgcataatcg tcatctgact gacctcatct tttgcatagt tacttggtca tgcctttcat     10200
     gggtactgat ctgggaaagt taatgaaaat ggagagactt tcagaagaga gagtgcagta     10260
     tctggtctat cagatgttaa aaggcctcaa agtgagtatt aataatagtc ttcagtaatg     10320
     cactcatgca aataaatcat cataaatctc tttgtgtttg cagtatatcc atgccgctgg     10380
     aatcattcac agggtgagta tgctttaaac gtttacagtg gagatcaaag taaaaaaaaa     10440
     aaactatttc taaatacctt ttttaaaaga aattatgata tttatgacaa gatatttgaa     10500
     atataaaaga ccatatagct atttagaaga gtggctagtg aaacaatagt ttgcgaaata     10560
     atcaggggaa ttcagcaaaa gtactttcta                                      10590
//


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