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EBI Dbfetch

ID   BX942843; SV 5; linear; genomic DNA; STD; VRT; 3994 BP.
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AC   BX942843;
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DT   17-FEB-2004 (Rel. 78, Created)
DT   10-DEC-2004 (Rel. 82, Last updated, Version 4)
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DE   Zebrafish DNA sequence from clone CH211-117D15 in linkage group 25
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-3994
RA   Howden P.;
RT   ;
RL   Submitted (10-DEC-2004) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   clonerequest@sanger.ac.uk
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DR   MD5; 78f36f1a87dcdceee0c35e6100f447db.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   During sequence assembly data is compared from overlapping clones.
CC   Where differences are found these are annotated as variations
CC   together with a note of the overlapping clone name. Note that the
CC   variation annotation may not be found in the sequence submission
CC   corresponding to the overlapping clone, as we submit sequences with
CC   only a small overlap as described above.
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one plasmid subclone or more than one
CC   M13 subclone; and the assembly was confirmed by restriction digest, except
CC   on the rare occasion of the clone being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Repeat names beginning "Dr" were identified by the Recon repeat discovery
CC   system (Zhirong Bao and Sean Eddy, submitted), and those beginning "drr"
CC   were identified by Rick Waterman (Stephen Johnson lab, WashU).  For
CC   further information see
CC   http://www.sanger.ac.uk/Projects/D_rerio/fishmask.shtml
CC   
CC   CH211-117D15 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
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FH   Key             Location/Qualifiers
FH
FT   source          1..3994
FT                   /organism="Danio rerio"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-117D15"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 3994 BP; 1269 A; 715 C; 782 G; 1228 T; 0 other;
     ttgtgctatg catcattgcg acgtgtagtt aaattttttg agaggtgcgc ataagcacat        60
     caacggccac aggcaagagc tatgcatcca cgcgtaggcc gcgccatagc atacgcgcac       120
     atttgacgca gaagtataaa tcagcattca cttgttctaa gttcaggcga gggactgttt       180
     aataagtaaa ccttaaccta aagttgacag caacagtttt tattgatatt gtgtaatctg       240
     agattgtacg atttcataca aattagcaac taaatcaaaa agaattgcca tgagatagcg       300
     ttggtctgtc atagccttta tagtctgttc ttcatggaag ctttaacaga aacacatgcc       360
     gcatgttcac ctctgacgta tttagccagt tgacgactat ataaaagttt ggattatttt       420
     aaaatataat gttttttaca tataatgtaa cgcagtggcg cagtgggtag tgctgtcgcc       480
     tcacagcaag aaggtcgctg gttcgagtct cggctctgtc agttggcgtt tctttgtgga       540
     gtttgtatgt tctccctgcg ttcgcgtgag tttcctctgg gtgctccggt ttcctccaca       600
     gtccaaagat atgcggtaca ggtgaattgg ctaggctaaa ttgtccatag tgtatgagtg       660
     tgtttggatg tgtgtggatg agatgagtag cggttggaag gggatccgct gtgtaaaaat       720
     gtgctggata agttggcggt tcattccact gtggcgaccc ctgattagat aatgaatgaa       780
     tgaataatgt tgcattagtt aaagtcttat tatatattat tttataagtg atgagtaatt       840
     aattggttaa ttgaaagtta ttttaaatga tcatcgatga caggattttg tagaaattga       900
     catccctaaa agtagataaa taaaactgat ctcacagtgc cctaatatac tacaatctca       960
     agcaaaaaaa cgaaggtcag taaataaaat gactttcacc aaggtgcaaa actaaccctg      1020
     gcctgaagaa cactttttct gcccagaaat ggaggagaaa aaaaatctat agcaattcta      1080
     cagctttgtg tagtctaata atgtcccgcc agcacccaca tatttcatct cccttatggg      1140
     actgttaaat acaatcaaac tcaatccggt gtgtttttaa taaagcggtg ccatcacatt      1200
     cagttaccca ggtcaggttc tcggctcgct ctcctcctcc tctgctttaa cattcaccag      1260
     acaaatgaac agcttaacgt cactttgtct tgacgcgtct cttccaatcc agcctcccaa      1320
     acatctcata gcaggctgtt gggttacact aatcactctc agtatgggag aaacagctcc      1380
     agaaatacat gctcatgact gcactacaca ggcataaatc aaaggcatca ttttatccag      1440
     ccgctcggtg attgtgatgt gtttgtatgg agggggaagg ggaaacatca gcaggcagga      1500
     ctgagaggaa aggatggttg cttggaaacc ctaggcgaga gagagatgga gacagagaga      1560
     gagagaaaca gaaagagaga ggaaggatgg gaagaacaag cgaaggggtg aggagagtat      1620
     acatatagaa ttgaccaaag cattgttttg ctttgatttg aggaaaaaca agtgatgtgg      1680
     tgtattgcat tacatgtata tgtcaaatca cagcgtttaa tacaaacaca agcacagtat      1740
     ggcaagacgt ttaacattaa atttacaaag ttttagatgc tacttttttc tgttaagtac      1800
     tacttattta cagtacaaag tccctttaag gcaagtcatt tcacttggcg gcaatctttg      1860
     aatggcaagc tactattttt ttgaataggg aaacatcaaa ttctcctaaa ggtcaattcc      1920
     atgcaaatgt caaccttgcc ctaaataatt aagtttttac caaaacagca aaaccctttc      1980
     taggtttttt gtgtaagctt gtattttaca gtactgtaat gctgcattca cacaatacgt      2040
     ggaagaagcg tcaagcatga gtgatttaca tgttaagtca atgcgaagat gcaaatagat      2100
     attctgtggc gcgaatgacg caattcacgc gaatgaagga ttagaatgaa gtgattagag      2160
     ttcataaagc acataaacac agctattctc tatataaaat ccatattagc catttagcaa      2220
     cgaatctaga gtccatgatg tgaattcgca tctattgtga ggtgaattcg acacctgaaa      2280
     aaagcggatt tgatgcgcga attaagcgag taaactcaat gttcatctgt ccatttacac      2340
     acgaatagca tgatttatcc gcctgtgccc tgtttggtaa ttaaattgat taaaacattc      2400
     ttttgtcaaa taaacgattt ttctagagtc atcccccata attctatagc tcaaaagtat      2460
     cgtttcaggc accaatacca tttaaaaaaa attgatttag catcggtatc gaaataaccc      2520
     caaacgatac ccaagcctgc ctttttgtca catgtttatt ttcctcgttt aaaatattaa      2580
     aaatgtttac agattaatat ttttctgacc ccataagcct gtggttaatt gttttgaaaa      2640
     tataaacaga tgtttcaata taatgtttct gataatttct ctgtgttttt atttttcaag      2700
     attttactgc aaatgtcaca tccataacac tggaattgca caaaattgat tgaattttat      2760
     ttttagaatc actaatgaaa cttaacaaaa acattctctt aaattgtttc tacacgttca      2820
     attaacataa ataaaacatt atttttttca ggttgctgaa gctaaagttt atgcgtacta      2880
     gaatggagca agatcacgaa accaacgtcc ttcgtgaccg tttctggagg acacaattat      2940
     tcaatcaaac tatggatcta ccataacagt caataacata tgtgttacat gagattatcc      3000
     tttcaataat ccaataatcc aatccaataa tgtccaatca tgctggttaa tctcccaaaa      3060
     ctatagcagg tttctaatag tttccatcat gtgatttgca tttgaatatg tggaggcggg      3120
     aattaatgag gtaggacagg actgacttta cctcgagtac atttcataca gattacaaaa      3180
     ccagagaaca tttcttttca agtgcagttg gatcaattaa aagtagatat ttcaagtttt      3240
     agactgggtt ggcctgtgag gcaagtattc ggtgtgtttg ctgaccctag aggcagggca      3300
     ctgcacaggg gtatggcccg gtggctagag ccactgcccc tctggtttat aagaataacg      3360
     ctgcagaaac tttcatagag aacaccagtc tggacggagc cacttctctg ctttactgat      3420
     cgatgattgg ctcctttatc agaaccaagg acttctgtcg ctagagtaga gctattgaaa      3480
     gtcaaacttt tccccatttg aaactgtatg agtgacactt cttgagtact attgtctttg      3540
     ttatttatta gccagtgctt atttgttaaa aatataatag ttaatattta ataaagggta      3600
     taatatttca gacaggctag caagatcttg accggtctgg aaattagtgc cagtttgcag      3660
     tatgaaaatt aatgcattta atggattaaa ttttaaaact gcttaaaatt ttaaataaag      3720
     ttaaaatatt gagtttgttc agatatttgt ctaatatttg tttgttttac agcaacatca      3780
     acaagcatgt agatgtaaaa agtaaaaagt aaatagtact ccacattgtg ttgacactga      3840
     catcaaaaaa gttatttgca aaatcagtaa ttagtaaagc caaaagtatt tttgtgcata      3900
     cgttagtgta tagagacagc ttttttaaat tagacccaac ttgatgatgt gctcaaacat      3960
     aggtgctcaa cacatacaac ctgggactcc aata                                  3994
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