spacer

EBI Dbfetch

ID   BX936316; SV 7; linear; genomic DNA; STD; VRT; 7852 BP.
XX
AC   BX936316;
XX
DT   04-FEB-2004 (Rel. 78, Created)
DT   19-MAR-2005 (Rel. 83, Last updated, Version 8)
XX
DE   Zebrafish DNA sequence from clone CH211-39G8 in linkage group 8
XX
KW   HTG.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-7852
RA   Auger K.;
RT   ;
RL   Submitted (16-MAR-2005) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   clonerequest@sanger.ac.uk
XX
DR   MD5; 9555a27c3ce6121d66f94f5fc738c31b.
DR   ENA-CON; CT992467.
XX
CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   During sequence assembly data is compared from overlapping clones.
CC   Where differences are found these are annotated as variations
CC   together with a note of the overlapping clone name. Note that the
CC   variation annotation may not be found in the sequence submission
CC   corresponding to the overlapping clone, as we submit sequences with
CC   only a small overlap as described above.
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one plasmid subclone or more than one
CC   M13 subclone; and the assembly was confirmed by restriction digest, except
CC   on the rare occasion of the clone being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Repeat names beginning "Dr" were identified by the Recon repeat discovery
CC   system (Zhirong Bao and Sean Eddy, submitted), and those beginning "drr"
CC   were identified by Rick Waterman (Stephen Johnson lab, WashU).  For
CC   further information see
CC   http://www.sanger.ac.uk/Projects/D_rerio/fishmask.shtml
CC   
CC   CH211-39G8 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..7852
FT                   /organism="Danio rerio"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-39G8"
FT                   /db_xref="taxon:7955"
XX
SQ   Sequence 7852 BP; 2680 A; 1335 C; 1334 G; 2503 T; 0 other;
     aacttaatat gtgttctgca tttgaaagca tatcaaacca tataaatagt cctttcataa        60
     gcataaagaa agaaagaatt ttgcaccttc gctcaccatt atgattggtc atactttgca       120
     ttgcacagca gcactaggca tgaagttaag taacagaaca tgaactggtg gtgccaaact       180
     tttattggga acaatatcag gtttcacatg tcctaaggtg ggatgttaag gtgatgttaa       240
     acttccacaa ggtccagaag ggagtccctt gtgcaaaggt cagtgcaatg cgagctgaga       300
     tgtcttcatc ttaaaaagta ctcttgcgtg tctgcgctat gtgaagttgt gtaacttatt       360
     taagggcaaa ggtaaaagct atataaactt gaaataaaag taaagagacg cttaattata       420
     cattgcacag atatttcagt tcatttaaac ctctaaaacc tttcaatgca gttataaagc       480
     tgagagtgat tttgactgca gaaaatgtga cctcttttaa aaatgagcta aaaggcgtat       540
     ttctcagctc gtctcctgat tggctgttca gacacacctc ttgaccacta acagctttta       600
     atatgtgatc attctacaaa gaactaccct ctcactccac acacacaaac acacacttat       660
     tcagctattt aaagccaagg caaaaggaaa ggactgaaat gtaatttttt cccaataaaa       720
     accatcatag tcacttctga catccaaact gcacagcaca gcagttttta ctatagcttg       780
     caaaatagaa ttacgttttt tgtaatagta tgatggttcc cagacatggg tttgcttgaa       840
     gggcatccgc tgcataaaaa catgctggat aagttggcag ttcattccgc tgtggcaagg       900
     ccggattaat aaagggacta agccgacaaa aaaatgaatg aatgaatagc atgatggttt       960
     ttttaagcga cagtgaaaat tatataagta aataaaaata taacctaaat aaaaataatg      1020
     tctgttaaga agtttcacct gaaatttctc caaaacaata ttcatttacc tttaagagag      1080
     agctgattac aatcgctcct gcattcacca tgggattatg gggcttctct gggaaaacaa      1140
     aaaagtttac acatgcatca tgttgaatgg aagggatttc gaaacagatc cagtaaagat      1200
     tgcagatgca atgttcctca gaggtgagga aatgcattga taagctttat agagaaagga      1260
     gctctgacag ttttacagct tcttcttaat cccagactcc atgtagcaat agaacaaatg      1320
     agatgacttt gatatgacca attcagagtc tcgaatatca tccaggacaa aacacattct      1380
     cattattatg aaagctgaaa atggttgtgc tgcttaatat atttgtagaa actgtttttt      1440
     cttagccttt taaagaatag tttaagtcaa caacatttac ttgaaaaata gacattatag      1500
     tataattata aatgcattca ccatcaattt aatgcatcct tgctcattaa aaccacttaa      1560
     tttatttcaa tctcattttc tatactacca atattgtgtg aaatgttaat tctgggatct      1620
     tctcaaatta cacagatgtg cataaataaa ctatatttgc ataatttgat gtgcccacat      1680
     tctacttgaa agacttctca gtaaccaaaa tagaaataag acatattgta atggtttctc      1740
     accctcttcg tctaaagaca gtttgttgaa tttgaggccg ctgggttctt tccccacata      1800
     tctgtgcacg tgttcactgc cagtctcgtg cacagctaga gcatattcca gaggcttcac      1860
     acacgactgc aagcagaatg gcacattcgt gtctcctacc gcatgcctgt gtatatagga      1920
     agacactaaa taaagctcaa agtgatagaa ccaaggaaag aggggaaaat atatagtcat      1980
     ttttccaaaa ctaaaagctt gttgggtaat taaaatggaa aattagatta aggttaaaaa      2040
     caccatttaa aactttaaca ccacatattt aaaaatgtag attatatatt gtatatcttt      2100
     atagcaaaac cttggtcttt ctgtggatat agtgacgtgt atatgtttca tatagagagc      2160
     tattacaata aagatacttg aaggttgttc tgttctgttt tttccagact ctgtattcta      2220
     aaatcactga agacacttcg ttctttccag tgttgtggag ttgctagctt caagtagcac      2280
     aacttctact agcacaactt catttttcag ttgctaacta tgttttccag caactgtggt      2340
     acagattgac aatggttaca ttctattttt gtgaacctac aacggtgtga agcagcacat      2400
     cgtcatctta caagatcata tgcttaaatg gtgcataaca gccattgtta attgttgttt      2460
     attcagttat tactgctagt ttataaataa taatgatatt tttgaagtat acaataattg      2520
     aaataaaatc cattatatat tctaacatga agcaagaatg ttgtgtgagg ccttcaatat      2580
     aatttcttac caaaatggag ccgcctgcca cacaatttgt aatcaaacaa taaaataaca      2640
     gtgtgtaata caacattaag ctttgatatc acaattgttt agcatgtttt aacaaagtac      2700
     aaaaatattt taattgtaag attcctcgtt cacattaatt cacttatttg atatatatgt      2760
     tttaagttga tatttaagtt tttagttgat atatatgcat agtttcaatg cagctatttg      2820
     tcatagctag tcatttgtag catagctaca gtgtagctac atttttatgt aatttctcag      2880
     tagcttattt aactgatgag ctttcagagt agcttctcca acactggttc atcctcgaac      2940
     tgtactgctt gtttggtgat tagaatatct gttttgaact gctgtcttga attaaatgtg      3000
     acatggtgtg tgacatctgt tgctccagtt gctatacgtg atgcagcgct gcacttgtct      3060
     ggtgttgacc accttatgtt aaatggtaag tataataaga caataataaa tgttactacc      3120
     gatgacatgc actcttgaag aaataataga aaataaaaag aaaagaaaaa aggaaaggta      3180
     aattgtagaa agttgtaaaa acataattat aaataaataa aggtaaaaat gttcagatat      3240
     ttttggtcag taagattttg aaaggcttcg gttttgctga ccaagtctgt atttcttttt      3300
     atcaaaaagg tagttaaaaa ttgtagtaat gtgttggagc caggcttgtg tgctgacata      3360
     tagcaccatt gggctcatgg cgacccaagt ttgattcctg gcttaaggtc ctaagccgat      3420
     ccttcacctt tctctgctac caatactttc ctgtctgttc tagactatcc tatcccaata      3480
     aaaggtgaaa aacccctaaa aaacaattat ttaaaaaaag tagcaatgtt gcgaaatact      3540
     agtacaattt caacatatta aaatgcaatt tattgctgct atggaaagct gaattttcaa      3600
     tagtatcaca tgacttttaa ggctcttttt gaaagttaat aatattcagt tgatttaact      3660
     aacaataaaa taaaatatcc atccattctg atatccatac aatacaacac agcaatttta      3720
     ctatggcttg caaaataaaa tgtaaactaa tgcaaaaaaa aaaaaaagta attgtacgat      3780
     gattatttta atcaccagtg aaaaaataaa taaaataata tcaaataaaa aaaataaaat      3840
     ccattctgat atccaacaca gaacacaaaa attttactat ggcttgcaaa ataaaataaa      3900
     agtttatttt tgttatagta taatgattat ttcactagtg aaaaaataaa aaaatagaaa      3960
     taccctattc aatttaattc aattaaataa ttaaattcaa ttaaattctc ttgcctggct      4020
     ctttactcct aacttcttaa agacagtgct cataaaatgt tcaatttaat caaatgggac      4080
     attatttgaa cacacggtgc aaagagttaa ttctgcactc ttctctcatt acataaatat      4140
     gagtaaataa actgtatttc acctctgacc atccactgtg cacagagaaa ctccccagag      4200
     atctggactg aacttcgcca gctgagggat gtagtttgct acctgtgcaa acacacacat      4260
     tcacaaacag agaacatatg ttgataaatg tgtttgttaa ggccaaggtc attccaaaac      4320
     agcgataaag aaaatcgatg gcttactttc cctccttgct gagtctgtgc gtcacaatac      4380
     agatggttta tgagcgaggt aaacgcttca aagtctggaa tgatgaactt tctctggaaa      4440
     gcttgagtca ggaggactat attactgcca acacatctag aaacagaaac acacttatgc      4500
     tcatgtgaca taacagccac ctgtgatctg taacgtgcta agagtcgaac atagcaggac      4560
     atgatatatg atccgtgttt attaaagcca actgaatggt ttcaaaagaa gctgtgcctt      4620
     agtggaataa caaacgcatt atctctaatc actggttagc tttacagctg aacgcaggta      4680
     gatgcacata aactacaggt caaccgtttg ggatcagtac gatttttaca aatctttgta      4740
     aaagaagcct cttgtgctga ccaatacact gatgcttttt tttgatggtt caactgaaat      4800
     attcttacaa tataaaataa ctgttttcct attgaatgta gttttaactg attaatttaa      4860
     agggcaccta tgatgaaaat catcttttgt aagttgtttg gacagaactg tgtgtaggtt      4920
     tggtgtgtcc acagtcataa tggggtgaca gaaacacctc tgacagaagc ctctcttttt      4980
     tatctattaa aaataggatc ggtaacgcag tggcacagta ggtagtgctg tcgcctcaca      5040
     gccaaaaggt tgctgggtcg ctggttcaat ccttggctca gttggcgttt ctgtgtggag      5100
     ttttcatgtt ttcaccctgc gttcacgtgg gtttcttccg ggtgctctgg tttcccccac      5160
     agtccaaaga catgcggtac aggtgaactg ggtaggctaa attgtccgta gtgtatgagt      5220
     gtgtgtgtga atgtgtgtgt ggatgtttcc cagagatggg ttgctgctgg aagggcatcc      5280
     gctgcgtaaa aatgtgctgg attagttggc ggttcatttc gctgtggcga ccccggatta      5340
     ataaagggac taagctgaca agaaaatgaa tgaatgaatg aaaaatagta taaaaataat      5400
     tcccattttg aggcccgctg caacgtgacg taggaatgcg gtttttccca gcccccaatt      5460
     taattgacag ccgcatatta acttgtctcc atagaaatca tatcaagaaa aaaaggcgag      5520
     acttgcgcaa agcaactgga attaaaagat ctgttcagct ctgtgtgatc atctgcacct      5580
     caaaactaag tttcacaagt tttacacatt tttaaaacag tgcatgtttg taataaaggc      5640
     agtacttgta gctttttttg cagtgttcag aaacctatgg gtgacgtcac gaatactacc      5700
     tccatatctt ttacagtctg tgtgtgactc accgttacag aaagggttga aataactcca      5760
     taacaaatac atcaaataac catggggaaa gttcttacta atcaagggag atatgcactt      5820
     taaattttaa tttattcctt tgattaaaag ctgaattctt cattactcca gtcttcagtg      5880
     tcgcatagtc attcagaaat cattctaata tgatgcactg ctgaccaaga aacactttat      5940
     tgtcattagt gttgataact tttggactgc ttcctatttt tgtcaaaaat gtatcaatta      6000
     aaatgcatta tttaccttta atcaccatga atgcattcca ttgttaaaga gtcctttgac      6060
     gagacaatgt ataaattttt taaaagattt taaaaatgct actattttaa actttatttc      6120
     atcaagaacc ttagaaatta catgagttgc aattttcaaa agctaggttc aattgtgaaa      6180
     tattattaca acataaaaga actgttttcc tattgaatgt agtttaaatg tacatttatt      6240
     ccattgattt aaagcttttt ttttagcatc atcaatactt cagtcttcag tgtcagaaat      6300
     cttactaacg tgatgttctg ctgaccaata aacacttatt attatcatta ctgttctaaa      6360
     ctgttgtgct gcttcctatt ttcactgaaa atgtgtcaat aaaaatctct tatttacttt      6420
     taatcatcat ggatgcattc aattgtccaa gagtaaaagt aaagacaaga aacaagatat      6480
     aatatatatt tttaaatgct gttaatttaa attttcattt aatcaaataa tcgttaaaaa      6540
     ataaatagca gttttcataa aactagtata acaggaaaaa aaaaattaaa taaacattaa      6600
     taattatagg actcaatagc atcaattgag taccaatatt aactgttcat aacagaacag      6660
     caaatcatca taatatacag taatgatttc taaagaatca catgacaata aatattggag      6720
     taacgaccat aaaattatga ttctttaatc aaagaaataa atacaatgtt aaactacata      6780
     caataaaaaa actgttttaa agtctcgatt ttcaaaataa ttttctacca aaatacatta      6840
     tgtatacatt ataatattta acaattaaaa cgtttttgct gttatttctg aacaaataaa      6900
     tgcagccttg gtgagcagaa caggtttctc taagaaacta tttaaaaaat gtacttatcc      6960
     caaacttttg accggtagcg tacaaatata atacctgtca ttatttacgt tggctctgaa      7020
     gtggaaagct gggtcaagta tttgtatgtg atgatatgtg catggtgaac tgactggttg      7080
     tatttagagt cttccaagaa cattgcgcca tcattcaccc gtaatggcat gtgagtgtat      7140
     gtacatatca taacagctgt gactcataaa ctgtcagcga agcattgaca tatcacggag      7200
     aacacacata aacacaatgc ctcagtttcc actcactttc tgaacagttc ttggtccatc      7260
     attgctgttc caaccgagtc ttgcactgcg tggtggatct gccgcataca gtctctcaga      7320
     cgggggtcag acgtctgcaa acctgtgctt ttgagtgcct ttgagaataa gaacatgtac      7380
     ttttaacatc atggatttaa tttttaaatt acacaattat tgcacagata atacaataat      7440
     acagggcgat tcaaaaagaa taccacaact ttgaaaaatc tgtatttaat caaagaaaca      7500
     tgatggaacc ttgggtaatt aatcaatgtg aagagtactc aacaaccttc agagcttcct      7560
     aaaattgacc acagaatgag cttagctctc cttttcttct ttgcagagtt ctcgattttc      7620
     aaagttgtgg tattctgttt gaatcaccct gtattattta atataataag ataatataag      7680
     gaataaacta cttgtttagg atgttataac attaaaaaaa gggagacagc ggaaatgttt      7740
     ggagcatgtt agaatccatt gaataaatga ataaataatt aaatgaaaaa tttgattgaa      7800
     tagaaccaaa tattatgtta tggtaaataa aacagttaag tagaaataat aa              7852
//


spacer
spacer