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EBI Dbfetch

ID   BX323834; SV 7; linear; genomic DNA; STD; VRT; 3505 BP.
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AC   BX323834;
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DT   12-APR-2003 (Rel. 75, Created)
DT   13-AUG-2004 (Rel. 80, Last updated, Version 9)
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DE   Zebrafish DNA sequence from clone DKEY-48B5 in linkage group 8
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KW   HTG.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-3505
RA   Barlow K.;
RT   ;
RL   Submitted (13-AUG-2004) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   clonerequest@sanger.ac.uk
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DR   MD5; c2b8c1b2a336cff6e5776bbb4b7f4d87.
DR   ENA-CON; CT992340.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   During sequence assembly data is compared from overlapping clones.
CC   Where differences are found these are annotated as variations
CC   together with a note of the overlapping clone name. Note that the
CC   variation annotation may not be found in the sequence submission
CC   corresponding to the overlapping clone, as we submit sequences with
CC   only a small overlap as described above.
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one plasmid subclone or more than one
CC   M13 subclone; and the assembly was confirmed by restriction digest, except
CC   on the rare occasion of the clone being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Repeat names beginning "Dr" were identified by the Recon repeat discovery
CC   system (Zhirong Bao and Sean Eddy, submitted), and those beginning "drr"
CC   were identified by Rick Waterman (Stephen Johnson lab, WashU).  For
CC   further information see
CC   http://www.sanger.ac.uk/Projects/D_rerio/fishmask.shtml
CC   
CC   DKEY-48B5 is from a Zebrafish BAC library
CC   VECTOR: pIndigoBAC-5
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FH   Key             Location/Qualifiers
FH
FT   source          1..3505
FT                   /organism="Danio rerio"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="DanioKey"
FT                   /clone="DKEY-48B5"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 3505 BP; 1244 A; 581 C; 556 G; 1124 T; 0 other;
     aaaagatctt tcaaagatca ctaacaactt cactgagcaa tagtcacagc aaagcaacgt        60
     tcaatacatt tttagtccct cttgaaaaaa ctctgttctg ttctgatgtt tttgccagtg       120
     ttgtgagaaa atgcaagcgt ttatatgaat tctttgcgct gtgaaatgca tagtgcattt       180
     tattaattag tttaccttgt gtgcaaatga agtgcatttt attagtgtat gtgtaatgag       240
     gacttacaac atgttgtcaa actgaagatc ttttcttaat tttctgccgt tttgtgtaat       300
     tgcacttgtt ttcttaaatt gcagcatgtt aaactctctc ggtcaccgtc agttttccca       360
     tgattattgc aaataaaaca aaataaaata aaataaaact aaagcattta gccaagttct       420
     tttttttatt ttttaaatag ttgtcaaaat tattagtcct cctgtaaaaa tgtaagttta       480
     ttttgtgccg agtgctgttt tcttgaacac attttaaaca taatagtttt ctttcaaaca       540
     taaacaggtc atttgtaata actaacttaa tttgtttttg taatgattac agtatatttt       600
     acttaatttt taagttattt tgcaatacta gtattcagct taaagtgtga tctttacaag       660
     ggtgaacaac agtggtttgg ttctgtagcc aaattatcac cttaaaattt taaggttcta       720
     tctgacattt ttgttaaaat tgagttattg acattctttt taaacttaac ttgtttacat       780
     tataggatgt ttttctataa gttgttaaca ttaagagttt ttatttaaaa acaaaaaaac       840
     aaacgttaaa cacaaactgt ttgctatgga atgcaaatat tttttaagct caatatttaa       900
     aaatcattca caatgcagat agaaccgtat aattccaagg tgataaaatg gagaaaaaaa       960
     tcttaagggg ccaataataa ccttaaactt agtaaaataa ataaatttta aaaataaaaa      1020
     taaatttgct tttattacag ccaaatggaa gtaaataata ctttcgccac aagaaaaaaa      1080
     attaggaaat acgaagaaaa tattcttgga tcattagata ccccttggga actaactaac      1140
     taactaacta actaactaac taactaacta actaaataaa tcaataaata aataaattta      1200
     caggagggtt aataacttag cctttaacta tagattaaaa agtgacatta cccagcaaaa      1260
     acatttattt ttaaatatct tacaccaaac accacaaata atgattttag tgaatagcag      1320
     atagcagagt tttgaagaga aaaattattc agtgaactaa agttttctgc taacagttaa      1380
     cattcataca agcctcagca gaaaaggttt tacaataatg ccgacgagag ttatgagcag      1440
     ccatatattc agatgcagcg tttattcaag tgcactttca gcatttgaaa gagttgatgg      1500
     atggtgtctg gatggctgtg gtgaagtgat actgtcacag ttggatctgt acagtgtcat      1560
     caacatgatc atcctccaca atccagcact gtaggattga agcatggaaa ttgcagattt      1620
     tccatcacag acggaacaga atgtgcaaat aaatgccagt tagaaaccat cactcattaa      1680
     agccaattcc cacctagagc ggttcttcaa agttcatgtc gtgaaaaatc tgacttttag      1740
     tgcacatctg aaatgcaaaa atgtattgaa acgaagcagt agaaatgaat tcttcagaat      1800
     tacacaaaaa aagaaaaaaa acatggctgc atattaaaag gctaataagt attcagaaat      1860
     gtggagatct cgatacatgt ttctcacata aagaggttaa ctgatcataa cagggcttat      1920
     ttattaaatg tactgtggca aaaatagcct gtttaactgc cattaaaaac gcagattcga      1980
     ctggtctttc acaagaattc ttatgagagt tgtagaatgt atttatttat cattatgcaa      2040
     agaaaaaagt aggtaaataa ttgtttttta aaggaggatt taataattta gtattgagat      2100
     gcagtttaaa atagctcaaa tgttcaaatc aaataaagta acttaatgca agtaatttaa      2160
     tttttgcatt aaattttttt tatatttata cacacacaca cacacacaca ttatacacat      2220
     atacacacac acatcatata tatatatata tatatatata tatatatata tatatatata      2280
     tatatatata tatatatata tatatatata tatatatgta tacacacaca cacacaaaca      2340
     agcacacaca cacacacaaa caaattttac tcctcaacta accctaacgc tatacagtac      2400
     tatacagtgt gtgtgtattt atatgtgtca tgtggctgta catatcgaca ctgatgagtg      2460
     gtgcgttggc tcaaggctgc agaccgagtg catttgtgtc acaccatatt gagtttacac      2520
     aacagttcga tggcataatt atcaatttaa aaataaataa atcaaaacac agtctcaaaa      2580
     actcttttgg aaggggaact acttccgcca ttcattcaca tctgcagctg acgtcaaaac      2640
     agcagaaact gttgctaata attgattctc tagcataatg tttacagtta tgataaaaca      2700
     ggtgattttg ctgacattaa gatagtcagg ctgaacacca tgaaatgcct tcagtctaca      2760
     gagatttcca agtatttctc tgttgcaatt aggagatcac aataattaac cctgaaaaac      2820
     ccaaagcaaa gcaaacacta gcagtttctg tgatataaac acagagagat caacttgtca      2880
     tttacttgtc acttagtgtc atttacctga tttataatga tctgatcagc tgttgtctga      2940
     aacatgcatt gagaaaacag tttttttctc actcaaaaaa cttctgcagt ctctgtcgcc      3000
     atcttgtggt ggaacatcaa ttgtcacttt tttggtctgc tcagtatgac agactgatgc      3060
     actaaatcag gggtcaccaa taacggtcct ggagggacgg tgtacctgca ggatttagct      3120
     ccaacttgcc tcaacacacc tgcctggatg tttcaagttt accaagtaag acctagatta      3180
     gcttgttcag gtgtgtttga ttagggttgg agctatctcc aggacagtgg ccctccagga      3240
     acaagtttgg tgaccactgc actaaatcat cggaattata aatctcatga catatccttg      3300
     taaataaact gtttctaatt ctgtttgtaa atgtcagagg gggaaagccc cgcccattat      3360
     taaccatctc tctctcatta gcataaacag ccctgagtaa gaagcagccg tgagccatta      3420
     gagctttcat atcattactg ctgaagataa taagaaagat agaatgctga agacagtatt      3480
     aagatagaag atagtgtcta agctt                                            3505
//


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