spacer

EBI Dbfetch

ID   AL929293; SV 7; linear; genomic DNA; STD; VRT; 8961 BP.
XX
AC   AL929293;
XX
DT   28-SEP-2002 (Rel. 73, Created)
DT   27-NOV-2002 (Rel. 73, Last updated, Version 7)
XX
DE   Zebrafish DNA sequence from clone CH211-93J7
XX
KW   HTG.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-8961
RA   Phillimore B.;
RT   ;
RL   Submitted (27-NOV-2002) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zface@sanger.ac.uk Clone requests:
RL   clonerequest@sanger.ac.uk
XX
DR   MD5; 6cfaf693cbccfaab52c0b3a218d9cc79.
DR   ENA-CON; CT994775.
XX
CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zface@sanger.ac.uk
CC   --------------
CC   
CC   During sequence assembly data is compared from overlapping clones.
CC   Where differences are found these are annotated as variations
CC   together with a note of the overlapping clone name. Note that the
CC   variation annotation may not be found in the sequence submission
CC   corresponding to the overlapping clone, as we submit sequences with
CC   only a small overlap as described above.
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one plasmid subclone or more than one
CC   M13 subclone; and the assembly was confirmed by restriction digest, except
CC   on the rare occasion of the clone being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Repeat names beginning "Dr" were identified by the Recon repeat discovery
CC   system (Zhirong Bao and Sean Eddy, submitted), and those beginning "drr"
CC   were identified by Rick Waterman (Stephen Johnson lab, WashU).  For
CC   further information see http://www/Projects/D_rerio/fishmask.shtml
CC   
CC   CH211-93J7 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..8961
FT                   /organism="Danio rerio"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-93J7"
FT                   /db_xref="taxon:7955"
XX
SQ   Sequence 8961 BP; 3044 A; 1510 C; 1426 G; 2981 T; 0 other;
     gaattccatg gagaacgtaa ggacatgcaa acaatgcaaa atgtgactgg aaaatatttg        60
     cctatatatg aatggaaaaa atcacaaaat gctaacaatt taggtgcttt taaatgctat       120
     tttacttata atttaattaa ttctatgcag taaaggacat gaaaatactg aaaaatattt       180
     tgctataact ctactcactg gcttctctcc tgtacagttt cacatgagaa ctcaaacttt       240
     gcacaaattg aactaaaaaa aaaaaaaaaa aaaaaaaact catgtaattt ttgatatttc       300
     aatttaaaat tgtttttttt ttttgcaatt ttaatttcat ttagcaacat ttcatgcttc       360
     atgacaaatt ctgagctacg ggatgcgagt atgaagtatg tactaatagg agagagttgt       420
     tttattggag tttaatgctg cacaccgaat gcataaacgt gtgtttggtg atgataaagt       480
     gacatgtgtc tcaagtctga aatttactgt ttgtgtgcga agcatataag tgattaacag       540
     catctggcct tgtaacaggt ctgtctttaa atgttaagtt attgttaaaa agaaattaca       600
     ccaagtagaa aatgtacttt tttgaacaac tgttacatgc taaaccattg gcttaatcat       660
     gtacatccta aattataatg ttgtaataac aatatattat taggctttca cagctgaatt       720
     atataacaag gccaaaatgg tcaagctcgc cagaggtaat tctacagaat gtattgccat       780
     ttgtggattt tgggatgttt ggccaggtct ttgtaggtag tatacatatg tgaatggtgt       840
     tgtcagtaaa gaaatcaacc aatacatatt ttatctccat tctgcaactg aaatatagag       900
     acaaaacaga caaaaacact ccttgattga caactgagct actgttcttg tggatgcggg       960
     tcgtagattg gatgattcac ttgtttatca caatcgtatc aaatgttcca tatgtaaaag      1020
     aaaatcagat attgtggttt ttttttttgc taacttaata agcaacctat aagcatattt      1080
     aaaaatccct aaaacccttc aaattctatt tagcagatga cagttccaaa aaatatcctc      1140
     taaaaaagta caaaatattg ttggaagttg atgaagtaca aattccttag agcaagtgca      1200
     gtagcctaca gtacttacca catcattgac atgttagact aaagcagcac aatgcccatg      1260
     tgcagtaaat atgcagttta ctttttactt tagttgtact tcaatgtact gaatgttgta      1320
     ctgctgttga actttattgt gctgtagttg aactgtgttt atactttatt atattgcatt      1380
     tttgcaattg tatttacttt tactgcagtt atccttctat atactactgt tgtactgcag      1440
     ttttacttca gtgtactgca ggatgcacgc tgatgtcatt gggtgaaaac tgcaattgta      1500
     gtgtccacag gatcacactg agttttgaaa attcttcacc ctggctggag ttttcagaaa      1560
     gtttctgatt tagtcagtcg acactgcgtt ttcatgtgga caaacagtga aaccacgtag      1620
     aaaaaaagtt tggttttgaa aagggcctta gggttggagg tttcatggct ccttttcacc      1680
     agcctggtgg ccaatcttca ttgattgcac attcgaaaag aaagagcaga ttatgaaggt      1740
     tttattaagc agagtaatag cacaattttg cttaactttt tttattttta ttatccaata      1800
     ggtaaacaaa ttacatggtg ataaaaacat cctctaaaaa gtacaaaata ttgttggaag      1860
     ttgattaaga acaatatata tatatatata tatatatata tatatatata tatatatata      1920
     tatatatata tatatatata tatatatata taatatatat atcagtgctg tcaatcgatt      1980
     aaaaaaaatt aactaattaa tcacaccttt ttaaaaaaat taatcgcgat taatcacatt      2040
     ttaaatactg aaacttgtaa ttttggctat ttaaatgtaa aattaatgta aacgcaagac      2100
     aaaaaatatt tcaatacaaa ataatattgt ttaatagaat ttttgtttaa cttgtaacac      2160
     agatttcttc atgtaaacaa catacccaca ataaaccatc aagatcctgg cctgacagcc      2220
     atatttatta cagaaattaa aacacaggca tgttaatgac atttaaattt caaaacaatc      2280
     aatgccaata aagaaaactt tgatttacat gttggattct aagtggactg caaaaaaatg      2340
     ctaaaataca ggaattgcag atatggaaaa ttaaaaatta taataataaa ctatagaata      2400
     caaactattg cactcattgt aaagttttat tgctgtgagt tgagaacatt atgtatagag      2460
     tataaacaat tttgcttaat cctcctttac attcatccag ttgctaggag tatcccgcaa      2520
     gtgcacagag actcccaaat gcccgcaaat gaatgataat ttcttgcaaa ccggtcgtta      2580
     aatacattgc acacccctct cgcccctact cagatacgtc gctcactcca cccctgacac      2640
     ccaacaggcc tgacacagac acacacacag acagacacac acaatgcgct gcagacgttt      2700
     tggcccaagc gactcccctc agattcaaca cgcatgatca cgttcatcaa atttgcttaa      2760
     actaagtaag cgtcctaaag tattactgta tttcacaagg attctaacac aacaacgcga      2820
     agcataccct ttcgttgcgt ttaatgagga aacacgctaa acttggaggg cgcatgctga      2880
     aaggcagagt aatgccctgt ctttgacagc tcgcgacttc accagacgtt ctgagtacat      2940
     ttacataaga caccaatgtg gcgaccccgg attaataaag ggatttagcc gacaagaaaa      3000
     tgaatgaatg aatgaatgaa tgaatgaatg aatgaatgaa ttaattgtgt gtgtgtgtgt      3060
     gtatatgtat gtatgtatgt atgtatgtat gtatgtatat atatatatat atatatatat      3120
     atatatatat atacatacat acatacatac atacatacat acatacatac atacatacat      3180
     acatacatat atatatatat atatatatat atatatatat atatatatat atatatatat      3240
     atatacacac acacacacat acacatgcat aacagtagaa acatgcataa cataacagta      3300
     gaaaataatg tagtcaaaaa taatattgat ataaagtaaa ctgatagaac aaaaccaatc      3360
     agtggtagca aataacaaca aagttagcaa tttaatgatt gtaataatga cggttaaatt      3420
     acaacagtaa taacaatgac aacaataacc ataataatag taacaacaag tactacacaa      3480
     actactacag caacaactac tgctgctact gcagcaacaa cgactatgtg ataactataa      3540
     tgtaatcata ttgataatat ctataataat aataataaaa acaacagcca atcatgtcca      3600
     tgtcacactt accccatgta gtataaataa gtatgtgcta accattgtgt gcacccttta      3660
     tttttttata tatataaatg ttatcattta atatgttgct ggactagcct ggggaagaac      3720
     tggtgaaacc agaccccact tgacacccac ctcactctct aaaacaagct atacatgtca      3780
     agaaatgaga tgtcacaggc aactgagggg aaaaaagaat tgagacagaa aaaaggaatg      3840
     aataaaacaa gaggagaaat aaaaagtacg caaagacaga attatgatgt actgtagaaa      3900
     aatacaaaca aaaataagta tcaaatattt ttcttttttt aaaggtattt aattataatt      3960
     aatattagat tcctgacccc ctcgccccct ttccccgtgt tcatgtactg atgaaggtag      4020
     ggatgcaacg attattgatt ttgattgtaa aattatagtc tgagtaatga tcactgttat      4080
     cacgattatt atgtatttat taatttcaaa acactactaa tttttaaaac accacttata      4140
     tttttaagtg ttatttattg ctgctcagta accaattaat acagcacaaa ataatacaaa      4200
     aacaaacaat agtcaatttc tctttgtaat tacaatcatt ttatttttaa ttaaaaatag      4260
     gtgaaaagtt tttggcattt aaacataaat aataatttta cactgaaaat aaatgacaga      4320
     acaatgaatc tatagataga tagataaata aataaataaa taaattaatt aattaattaa      4380
     ttaaaaaaaa ataataataa gaacaaataa aaaaagtgtt tgtctaatgt aaatgtacat      4440
     attagttaaa tccaccagaa gtaattgatc atttgtatta tttgctgtat attgcttgtg      4500
     gatatgtcac ctagggcggg gggaggatgt gacatcccat aaagttggag agtgcatcac      4560
     cttctcccaa aacagtgcca taaggcgtga aaacgaatgt ctggggtgtt ttgtgtacta      4620
     tgtgaacatg tctctgaggt taaaccattt ttgataaatt tttgcccagt tagatgaggt      4680
     ctgtgaagta cttcataagt aggcatggga caataaccgt tttcaaggta taccgtggaa      4740
     agtcaatttt ctgctataca gttcctctgg tttatgaaag attttttatt tttattcttt      4800
     tgtttgtttt tagcacaaca gtatctccag cacaaaatat ccccaaaaaa tgctgtttta      4860
     aattgtaaag aggtctgttt acaaaatcaa atattcattt gaattattca tcctgacatg      4920
     tttacctttc caaaatattt taaatgtatc tcaaaataaa atattttgtg ttcaaagggg      4980
     gaaaagtttt agttttttag tcagacttaa aaagagctta tattagagca gtaatcacaa      5040
     tcctgtcaaa ctgtgaaacc gtgatatttt tatccaaggt tattattgcg acttcctgat      5100
     cccaccttaa gttgttagag aaacagtgaa ggtcctttta tttgtgacat acttgatatc      5160
     tgagacagac atgctaagcc aaagacgtta gtagcaaaac tttatataaa cttgaaacat      5220
     gacaatataa caaacattaa tctgtgggtt gaatacttgt tgctcatccc gttaaggctg      5280
     attattatgt tgtagcgtgc tatatagtgt tatagggttg ttgcaagtgc cgtggcgctc      5340
     aacaaaaaat acggctaccc cactctcatt cctcttccta acacctgtct gagtgtgcac      5400
     gtgctttatt tgctagcagg tgccaggtat gcccacgcga ccaaaacaaa atatgtcact      5460
     gtaaaaaaaa aaaaaaaacc tgaaccaatc agtatacaaa taaacactat aattaaatga      5520
     aaattaataa ggctcctata taccagcccc taattattag gtcaacacat aataattatc      5580
     caaaattaca gataggagac ataaatcaaa cacatgaaag ttcaactata aagtccaaca      5640
     gaaaaatgtc tttatactta actttctggt tgtttctttc cttcagctta tatatgaaag      5700
     tttttttaat aatgcacacc atattagaag gtatttcttt ttggtaaagc tgaaagcccc      5760
     tgatgctgca tcaacagtgt tgttgtttag attgacttgc cacatatgag ttcattccat      5820
     ctgaaacatt taatgtcatt ttcacactgt ctgtactgtg tttcgagaat gtcaagtttt      5880
     gcctgttccc ctgcaatttc agcatccagt tgcaatcttt tttacccttt acgcaattgt      5940
     tcctcctctc ttctagtgca tgtatttctt ctaatattta tttctttatg gctaaagcag      6000
     ccaactcggc ttgcagagga ggttgaagaa tgttttgatt gtgatgatct gttactgctc      6060
     atgattgtga gattatcaca tggatttgtt tcatcttcaa tttcagcttc atttgatttt      6120
     gcggaatgtg attcattttc attcacttct gttgtatttt gtgaaacatc ctgggtttgc      6180
     ataatttcac taatctattg ctcagtctgg ttttgaaaag cactgctgta attcattatg      6240
     cttaaacatt tattttgttg aagaaattta ttttcaggga gtagaggcat taattcatca      6300
     tttacattaa cagcattctc acactagggc tctattttga cagtccatgc gcagagcgca      6360
     aaacgcgggg cacaaacgct ttcagggcgt gtcagaacgc atttttgcta atttaaggac      6420
     gggaaaatct gctttgcgcc gtggcgcatg gtctaaaagg gttgagttta ttttcttaat      6480
     gagttatagg tttgttttga gaaaaaacca atcagagtct catctcccat tccctttaag      6540
     agccagctgc gtcgcgccaa gagcgcattc gctatttaca ggacgcaaag taagcctaag      6600
     tgggaaaaaa aatgagcatt tcactagcaa acagttaaca gttttttttt tttttttttt      6660
     ttttttactg aaaactgtta aacagagcat ctactgcgtg agaatgagag ataatggatc      6720
     tactttcaca ttcgctcttg gatagggaaa cttttatgca cagacatcaa ttagtctatt      6780
     aataaataat tttgtttgtt aagcgcaaat attcgtttca gaactatttc taaattcagt      6840
     tctaatttcc agcaaactaa taaatgaaca acaataacaa agtgtgctca aaaacctgag      6900
     ttaaatccta aaacacatgc tgtgccccat atggtctaaa acctgacagg tgggcaaatc      6960
     taagcttgtt tttaataaaa caaatataaa tatggatata ataaataatt ctgctaataa      7020
     taataacatt attcaaaagc aaattgttat gaatgaactg aaaaagcctc ccgagatgat      7080
     gaagacataa aagcagtgat ttttcatatt tatgtaggct agaaaataat gttttgtaat      7140
     tttttttatc ctttatattt atatcctata tctgttctta ttatatccta tatatatcct      7200
     taatataaat ttttttttca tatgtaaaaa tatttgccta ttgctctttt gtgcgtatta      7260
     agtagtgcgt aagcgaggcg caactctgcg ccggagttta gaacgggttt gttatggtct      7320
     aatgaaaaat ctattatagc ttctcaaaat agccaccctt tgatcatctg cctgtgttta      7380
     taactacaac tctggattgc ctttatacac ctgtttgccc ctgtattgac ctttgcttta      7440
     ctgaccttcc tattaaaacc tgcattttaa tccacaagtc tgctcccagt gtctccctcg      7500
     ttacacttaa atcgttacag ctattctatc cagcagcgtc cagagccatt gtgcaaagcc      7560
     tacgttatca taaaactgct tgcaagcaaa gtctctttaa gatttaagat ttaatgctct      7620
     tcacactaag ttatggtgta ttacgataga aatctgttgt gacagtagca cacactgacg      7680
     ctattaacaa tgtcacatgt ctaccgttac tggtttattt acttcacatc aagcaatctt      7740
     tacattgtaa tacgctgcta agcaacacaa ggcatcgaat gtcgatgtag cgcacattgt      7800
     tcaagcgtca attcggtcat ggcatttcat ggtgcatcaa gtgtgatacc taattcaaca      7860
     ccagcgcttc ccacacatga cactagaatt gacctcagcg gcccggttca ttgtgcatga      7920
     gaatacttcg ccacagactc gcaagctcat gtaaaatgtg ttaaatgcta aacatcttag      7980
     ttgttttcat tttctgttaa ataagaataa gaaatcattc tgttgctgag gaccactttt      8040
     taaaagaaag aatggtatta ctttttgggc agaaggaaaa tttaatctaa ggcatttcca      8100
     tatttacctc ttctttaaaa agcacagaaa actaaagtga tctgataaac agtgtcagct      8160
     ttgcacatga gtttgcagtt ctgtctttat ttacattgtc gtacttttcc catgtgggaa      8220
     gtagggtgga atctgtgcaa tatattatgc aaataaaata cattttgata aaattattct      8280
     taaaagtcac attattttat gtgctgtggt gaaaaggacc aataactcct tatttttgct      8340
     ccccagtgtg aaagatattt ttcagcttga aactggatca aaagttcatc aaaaagctgt      8400
     gtgtgaaatt gaaactttgg acactcaact tttagcaggt ggtcagttaa caatattttt      8460
     tttcttatgt ttctgctctt agctgttttt accatttgct gatggaataa aataaataac      8520
     ttaagtgacc tataattaat attttgctcc taaaaatata tttttgtttg ttcaattaag      8580
     atatttttag ggccttaata tttattcttt aattatttta tatattctta tgtcaaaggt      8640
     tcacatttat gcaaccaata tttaataaat tggttttttt tttccatact ttctgttgct      8700
     gacttgctga cttttgttct cagtttgatc tagccgttca tacattccac tcaacaaaat      8760
     aggtaaaagt aaagtattca tgctttgtgc tgatatcgga tttgtatcgg tatcggttcg      8820
     tactgaaggc tgctatatca gtatcgtatc ggaagttaaa atgttgtatc aagacatccc      8880
     tagcaaatag tgcgacctcg cgcatccgat tagcacttca aacagcttta ctcatacacc      8940
     aatgtcaacc agatttctta t                                                8961
//


spacer
spacer