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EBI Dbfetch

ID   AL845514; SV 4; linear; genomic DNA; STD; VRT; 3994 BP.
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AC   AL845514;
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DT   16-AUG-2002 (Rel. 72, Created)
DT   13-JAN-2009 (Rel. 99, Last updated, Version 13)
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DE   Zebrafish DNA sequence from clone CH211-59M1 in linkage group 4 Contains
DE   the 3' end of the rnf2 gene for ring finger protein 2, the ivns1abpb gene
DE   for influenza virus NS1A binding protein b, eight genes for novel proteins
DE   similar to vertebrate PIM family oncogene, five novel genes and a CpG
DE   island.
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KW   HTG; ivns1abpb; rnf2.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-3994
RA   Harrison E.;
RT   ;
RL   Submitted (12-JAN-2009) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: zfish-help@sanger.ac.uk Clone requests:
RL   http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
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DR   MD5; ce84b6dbd5016e8a325cebc29a304440.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: zfish-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   The following abbreviations are used to associate primary accession
CC   numbers given in the feature table with their source databases:
CC   Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
CC   Information on the WORMPEP database can be found at
CC   http://www.sanger.ac.uk/Projects/C_elegans/wormpep
CC   
CC   Clone-derived Zebrafish pUC subclones occasionally display inconsistency
CC   over the length of mononucleotide A/T runs and conserved TA repeats.
CC   Where this is found the longest good quality representation will be
CC   submitted.
CC   
CC   Any regions longer than 1kb tagged as misc-feature "unsure" are part of
CC   a tandem repeat of more than 10kb in length where it has not been possible
CC   to anchor the base differences between repeat copies.  The region has been
CC   built up based on the repeat element to match the total size of repeat
CC   indicated by restriction digest, but repeat copies may not be in the
CC   correct order and the usual finishing criteria may not apply.
CC   
CC   IMPORTANT: This sequence is not the entire insert of clone CH211-59M1. It
CC   may be shorter because we sequence overlapping sections only once, except
CC   for a short overlap.
CC   
CC   During sequence assembly data is compared from overlapping clones. Where
CC   differences are found these are annotated as variations together with a
CC   note of the overlapping clone name. Note that the variation annotation may
CC   not be found in the sequence submission corresponding to the overlapping
CC   clone, as we submit sequences with only a small overlap.
CC   
CC   The true left end of clone CH211-51E12 is at 1995 in this sequence.
CC   The true right end of clone CH211-286M4 is at 2000 in this sequence.
CC   
CC   CH211-59M1 is from a CHORI-211 BAC library
CC   VECTOR: pTARBAC2.1
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FH   Key             Location/Qualifiers
FH
FT   source          1..3994
FT                   /organism="Danio rerio"
FT                   /chromosome="4"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-59M1"
FT                   /db_xref="taxon:7955"
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SQ   Sequence 3994 BP; 1339 A; 680 C; 830 G; 1145 T; 0 other;
     gatggataga tagacggacg gacgaacgga cgaatggaaa aagacagaca gacagacaga        60
     taaataaagg ggtggatgga tggacagatg aatggacaga aaggcagata gatagataga       120
     cagacagaca gacagacaga cagacagaca gacagacaga cagacggacg gacggatgga       180
     cggacggacg gatagataaa tggatggata aatagatgga tggatggatg gatggatgga       240
     tgggtggatg ggtgggtggg tggatggatg gatggattga tagatggatg gatggatcga       300
     tgaatggatc atgaacagat ggatggatga acaaatggac aaacagtcaa acagacagaa       360
     agacagatgg acgaacggat ggacggatga atggcagaaa ggcagataga cagacagatg       420
     gatggacgga aggatgtatg gatgaatgat agacagatgg atggatagat ggatggacag       480
     aaagacagac gagtgggcgg atggatggat agatagatat agagaggttg gatggacaga       540
     tgaatggaca gaaagacaga cagacgggtg ggcgggtgga tggatagatg attgatgtat       600
     tgattgattt attgatgttt taattgattt attgatgtgc tgactgattt attcatgtat       660
     tgattgattg attgattgct gtattgattt atttattgat gtattgatta ttacgctgtt       720
     tatatattac tttgcttcca aaacaaattg atcttaatgt aatcaaaaga gtttctaggc       780
     ctacaatacc acgataataa ataaaataaa acagtaagca aggaagagag gtgcacttta       840
     taaatacaca tctatttgta agacgtacaa gtgtgtacag tagttcagaa attcagagca       900
     agacggcgag ctgtaaaatg agcattagtc acagagagtg aaatgaattc acaaacctca       960
     aaaagagcaa acaaggcaga ctaattactg tggagtcata aaagaggaag cctgcgccga      1020
     acacacccac atctatcctg caggacaaat tgttgtggtg taaagtcaaa aaagcaacaa      1080
     gcggctgcag gcgttctgtg gcgtggagat tcctgtggaa taacggccgt aactcacaga      1140
     cagatgccgt ttgcttgtcc tccttaaata ctttcaaaca atttcactgc atttttcctt      1200
     ctgcagccaa agccaatggc agagttcttg ttttaatgtc ttcactttgc cataagataa      1260
     atatatcagt agctatgctt ccaaccaaag atgctaacta aatttatgtg caaaactgga      1320
     ttatcgcata gaagacgtgt aaataaagca gcgcttccat ccaacaagtc aaaaagaaca      1380
     aaatcacctc ttcctgatga actggtgcca aatatccacg gtaaataaag tatgaacagt      1440
     tctctcttca tttctctcta agccgatgtt tcctgaggtc aggtaagtca ttaaaggttg      1500
     tttgattgtt gctgtgtgtg tacgatttca ctgcaaagca acacagattt ggtgaaaagc      1560
     cgtgaccaaa tcagtcattt tagcccacaa aaccctgaaa aaccagccac gaactccttc      1620
     ataaatcaag ccgagcctga gattctgcag gagaaatcct gttgattctg tattataact      1680
     gtgtaacagg aatgcattca gacaatgaga agtcagagtt ggcggattga gcaggaaaag      1740
     aagcgttgag caacccgatc ggagagacag cgctacagat gaaatcatgg gatttgtgat      1800
     ggtgaacaca gatctttctt catcagtggc cagcgtgagc tcactgtcct caaagacaaa      1860
     tccctttcat ccacttacgc ttggaaataa tgattttact ctgcagggag cttcgccagg      1920
     tccagttgtg gattaaacag ttgtgatata aatatatatt gatgcatctg gtgcttttat      1980
     ccaatgcaac tactgaattc agagcgcaca tatttccctc tttcttgtca ttttgggttt      2040
     gtgtgaagtg aatcttttca aagtttgcaa ataaagaaaa aatattatcc atggcatcaa      2100
     aacagaatat tcccaaatgt ccagataaat attattattc tgccttttgc tagctcatat      2160
     aagaaactga tgattttctg tttactgcat gcaaaaccta taatagtgag taattggtaa      2220
     aatacagaat gtcttcattt taaacaaagg ttgcaagaat tgtcttgttg gttggcttta      2280
     gaaaaattac atatatgttt aagagaaaac ctgaaaatag tgtcaaaata tgcaattcct      2340
     ttataggatt tctaaaggaa gctggtacaa atattttgtc tttaaattgt atgtgtctct      2400
     acatgcatgc ttttatttat ttcttttctt tagtattttt taaaagttcc caaaatcaat      2460
     aaaaacagtg tttacgcaaa aaacaaactc ctcccacaaa actttatttt gtatttgaag      2520
     cctttgctag gatgtctgtg attatgagtg tgagatccat cgtttcacac tgacactgat      2580
     ttgcaaatgt tacagttcaa acacacactg aagctccaaa gggaaaaacc atgcattaag      2640
     aggcttgggg ggtgaaaaca tttgcaattg gcagattggg gtcatgttaa tttattttgc      2700
     tttgttttct tggaaacatg ttcgtatctt ctgtagcttc tgaaaggtag tgctaaataa      2760
     tactaatacg attttaaaaa tgtactcttc tgcattcaat aaaagctttc ccacctcggc      2820
     tatcctaatg tgaggcaaga attttcaaag tgtgcaataa taaaaaaaag aggaaaaaaa      2880
     acaagcaact gtgaattaga tgcatttccg taatgttggt agagtggcag tctgtaggat      2940
     tggtaagcta gcaaccaaca gtaaacaagc caagcataat ggagtcacgc gagtaatatt      3000
     caaacccacc ttcatgtcta aaaccaccat aaacaaacat aaaatatttt tactcaaaat      3060
     ttggaatttc cctcactagt ttctggtaca atattttaaa atgcgcatta aaacaagcag      3120
     atggaaaaac agctcatgga actctcgcct taagctgtat atatgtacag ttgaaggcaa      3180
     aactattcac cccctatgaa ttaattattt ttcaaatatt tccaaagtga tgtgtaataa      3240
     agcaaaataa tttattctgg tattttctaa aatttgtttt cttctggaca aagtcttttt      3300
     tttatttttt atttttttta cagtttttag attgaaaaat agtgaggtca atattattac      3360
     cccctcttaa aaaattgtgt tttctattgg ctacagaaca aaccactgct ttacaatgat      3420
     ttcctaatta ccctagttaa cctagttaag cctttaaatt gcacctaatg ctgaaaactc      3480
     gtatcataca aaataacaaa accttttatt tactgtcatc aaggcaacga caacagaaat      3540
     cagccattac aaatgagtga ttaaactatt atgttgaaaa actcttctcc gataaacaac      3600
     cctgggcaat atttcaaaaa gtattacaat ttcacaggaa ggctaataac tttgacttga      3660
     tttaattgtg acagtgattt gggagaggca ggtataccac agcacattat cctgtgtaat      3720
     ttgtaagtct ttgtaatgta cagaatgatg gtagtgtttc tacaggatgc ctgctggctc      3780
     ttgaacttta caaacattcc tcggctcacc ttcacatggt ttccgctgtt gcgctggctt      3840
     tcagacggca cttctgaagc attaacactc tttacaagaa cagttcccgc tctctcgcct      3900
     gctgttctgg aggaaaaaaa acacaacaca gagacacaaa atcacaaacc ttcacactga      3960
     tccaggtgtt cccctgacag cggggaaatc tgct                                  3994
//


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