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EBI Dbfetch

ID   AC138661; SV 2; linear; genomic DNA; STD; HUM; 4262 BP.
XX
AC   AC138661;
XX
DT   16-JAN-2003 (Rel. 74, Created)
DT   23-JUN-2003 (Rel. 76, Last updated, Version 2)
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DE   Homo sapiens chromosome 18, clone XXfos-87120G11, complete sequence.
XX
KW   HTG.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-4262
RA   Birren B., Nusbaum C., Lander E.;
RT   "Homo sapiens chromosome 18, clone XXfos-87120G11";
RL   Unpublished.
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RN   [2]
RP   1-4262
RA   Birren B., Nusbaum C., Lander E., Ali A., Allen N., Anderson S., Barna N.,
RA   Bastien V., Bloom T., Boguslavkiy L., Boukhgalter B., Camarata J.,
RA   Chang J., Chazaro B., Choepel Y., Collymore A., Cook A., Cooke P.,
RA   DeArellano K., Dewar K., Diaz J.S., Dodge S., Faro S., Ferreira P.,
RA   FitzGerald M., Gage D., Galagan J., Gardyna S., Gord S., Graham L.,
RA   Grand-Pierre N., Hafez N., Hagos B., Horton L., Hulme W., Iliev I.,
RA   Johnson R., Jones C., Kamat A., Karatas A., Kells C., Landers T.,
RA   Levine R., Lindblad-Toh K., Liu G., MacLean C., Macdonald P., Major J.,
RA   Matthews C., McCarthy M., Meldrim J., Meneus L., Mihova T., Mlenga V.,
RA   Murphy T., Naylor J., Nguyen C., Nicol R., Norbu C., Norman C.H.,
RA   O'Connor T., O'Donnell P., O'Neil D., Oliver J., Peterson K., Phunkhang P.,
RA   Pierre N., Raymond C., Retta R., Rise C., Rogov P., Roman J., Roy A.,
RA   Schauer S., Schupback R., Seaman S., Severy P., Smith C., Spencer B.,
RA   Stange-Thomann N., Stojanovic N., Talamas J., Tesfaye S., Theodore J.,
RA   Topham K., Travers M., Vassiliev H., Viel R., Vo A., Wilson B., Wu X.,
RA   Wyman D., Young G., Zainoun J., Zembek L., Zimmer A., Zody M.;
RT   ;
RL   Submitted (15-JAN-2003) to the INSDC.
RL   Whitehead Institute/MIT Center for Genome Research, 320 Charles Street,
RL   Cambridge, MA 02141, USA
XX
RN   [3]
RP   1-4262
RA   Birren B., Nusbaum C., Lander E., Abouelleil A., Allen N., Anderson M.,
RA   Arachchi H.M., Barna N., Bastien V., Bloom T., Boguslavkiy L.,
RA   Boukhgalter B., Camarata J., Chang J., Choepel Y., Collymore A., Cook A.,
RA   Cooke P., Corum B., DeArellano K., Diaz J.S., Dodge S., Dooley K.,
RA   Dorris L., Erickson J., Faro S., Ferreira P., FitzGerald M., Gage D.,
RA   Galagan J., Gardyna S., Graham L., Grand-Pierre N., Hafez N., Hagopian D.,
RA   Hagos B., Hall J., Horton L., Hulme W., Iliev I., Johnson R., Jones C.,
RA   Kamat A., Karatas A., Kells C., Landers T., Levine R., Lindblad-Toh K.,
RA   Liu X., Lui A., Mabbitt R., MacLean C., Macdonald P., Major J., Manning J.,
RA   Matthews C., McCarthy M., Meldrim J., Meneus L., Mihova T., Mlenga V.,
RA   Murphy T., Naylor J., Nguyen C., Nicol R., Norbu C., O'Connor T.,
RA   O'Donnell P., O'Neil D., Oliver J., Peterson K., Phunkhang P., Pierre N.,
RA   Rachupka A., Ramasamy U., Raymond C., Retta R., Rise C., Rogov P.,
RA   Roman J., Schauer S., Schupback R., Seaman S., Severy P., Smith C.,
RA   Spencer B., Stange-Thomann N., Stojanovic N., Stubbs M., Talamas J.,
RA   Tesfaye S., Theodore J., Topham K., Travers M., Vassiliev H.,
RA   Venkataraman V.S., Viel R., Vo A., Wilson B., Wu X., Wyman D., Young G.,
RA   Zainoun J., Zembek L., Zimmer A., Zody M.;
RT   ;
RL   Submitted (20-JUN-2003) to the INSDC.
RL   Whitehead Institute/MIT Center for Genome Research, 320 Charles Street,
RL   Cambridge, MA 02141, USA
XX
DR   MD5; f3814841f1939d3ca19072d9e89f3fd7.
XX
CC   On Jun 20, 2003 this sequence version replaced gi:27753684.
CC   All repeats were identified using RepeatMasker:
CC   Smit, A.F.A. & Green, P. (1996-1997)
CC   http://ftp.genome.washington.edu/RM/RepeatMasker.html
CC   -------------- Genome Center
CC       Center: Whitehead Institute/ MIT Center for Genome Research
CC       Center code: WIBR
CC       Web site: http://www-seq.wi.mit.edu
CC       Contact: sequence_submissions@genome.wi.mit.edu
CC   -------------- Project Information
CC       Center project name: L29132
CC       Center clone name: 87120_G_11
CC   --------------
CC   Only the last 4.3 kilobases of this clone are being submitted.
CC   The remainder overlaps accession number AC091135 [WICGR project
CC   L12072].
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..4262
FT                   /organism="Homo sapiens"
FT                   /chromosome="18"
FT                   /map="18"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="Human Female Fosmid Library"
FT                   /clone="XXfos-87120G11"
FT                   /db_xref="taxon:9606"
FT   unsure          complement(16..37)
FT                   /note="<30 qual SNGL region"
FT   unsure          complement(78..84)
FT                   /note="<30 qual SNGL region"
FT   repeat_region   1577..1856
FT                   /rpt_family="AluY"
FT   unsure          complement(1985..2208)
FT                   /note="single clone coverage"
FT   unsure          2379..3575
FT                   /note="PCR product sequence only"
FT   repeat_region   4021..4199
FT                   /rpt_family="(TGG)n"
XX
SQ   Sequence 4262 BP; 1004 A; 588 C; 1285 G; 1385 T; 0 other;
     catacattta atataccctc accatacaga atgttctttc cctattacat aaggagtata        60
     tgtattaagc actaaatctt tggaataata aaagactata ttcatatttg gtaacttatt       120
     taatcagaac aggtttacaa cataaataaa tagattgaac ttactttgta taaaaattgt       180
     attatctaaa acttcacaga gaaaatagga aaactccacg ttaagtgttc aggtctgcta       240
     agtcatattt ttaaatctaa gtgtaggcat gaaaatgact tcattgtcat ggtagtaata       300
     gctgaactgg tcaataagta agtcttgttt tagaagtggt tgtttctggt aaccactata       360
     accccacgtt tttggagtta tatgttggca ctgatactgg ccatagaatt ccctatggta       420
     ttgatggttg atacagaatc tggtatatct ggtgtaggaa tgaggatagt acatgttagg       480
     atttaatttc taggtatact aaccacagtt gccccaggaa taggtcatta gaaagttgtc       540
     atttttgtca agtgagagta gtaatctgac ttagtcaatt tactagaaaa aaatgatagt       600
     gttgcattta tgaataagca ctgaatgact ttgaataaca tgctaataga aattgtgatg       660
     cttgtagatt ccagtgatag ggtactaaaa ggttcagtaa agttttgtct gttgtaggag       720
     tacatagagt agaaatgtgg tctctattgt gaaatttcag tagatgtcat gggagtagca       780
     cattttgctg atgtggcatg gttgctgtgg ctatgaaggg actcatttga aggggccatg       840
     gaagagctgg cagtattatg atagcagatt atgtagaaac tgtaattgca ttttctatta       900
     acaggtaatg atgctcatgg agattgtaaa ctgagctgac attgctaggg agttgtgatc       960
     gaagagtcag ttgagttagt agtgtatgtg ttggctttca tttagttgag ttggtgtcag      1020
     tggaggttaa agatgatgtt ttagttgtat cagaaaacag aatagattca gtaactgagt      1080
     tggaggtagc tattgtgagg gttgtaaatt caattaaagt gctggtagta gtgcctgatg      1140
     attttgttaa agtaatagtc atttgtaggt tcatttgata tgagagtaat tcagggttga      1200
     gttaaagttg ttggatgatt taggtagttg tagctttaac tgaagtggga gttttggcca      1260
     ctgtggatac caatgagtga aactgttaat cttatgatag tagattcagt aaaaagttac      1320
     aatggtcgta gactcagtta atatgaacct ggttgtcatg gctgtggcct caattgaaaa      1380
     gataattgtg atagcagtaa tgtattcagt tgaaggaaca aagcttgaag ttacagtgat      1440
     aagtttggat taagaaatgg tgctcacaat tatgctgaca cgttcagatg aggtgctacc      1500
     agtaggtgtc cttatagtaa cttcggttaa agtagcagct gctgttgtgg ttattagctt      1560
     atttaaaatg gtagcaggcc aggtgtagtg gctcatgcct gtaatcccag aactttggga      1620
     ggctgaggcg ggtggatcac gaggtcagga gattgagacc atcctagata acatggtgaa      1680
     accccatctc taatgaaaat acaaaaaatt agccaggcgt ggtggcacat gcctgtagtc      1740
     ccagttactt gggaggctga ggcaggagaa tcgcttgaac tcaggaggca gaggtggcac      1800
     cattgcaatc cagcctgggc aacagagtga gactctgtct caaaaaaaaa aaaaaagtgg      1860
     tagcactacc aattgcatct acacactcat tagatgaggt ccatgttgtt gttctgttaa      1920
     attcagctga agtgctatat atggttgtgt ggtttgtggt caaattgaag gaatggctgc      1980
     tgttgtgata attggttctt ttgaagcaat tgtcctggct cttatactta caggctagta      2040
     gaaatgctgc ctatgattgt tatggtaatg accgtagtaa aaatggtggc tatttctgtt      2100
     ttccaggttt agttcagtca aagtggtgga tgctgttgga gtagtgggtt cagtagaagt      2160
     agtaatgggg attttgtggt tgtagcctga gtcggagtgc ctgcagttgt tgtggtggtc      2220
     agttcaggtg aactggtggc tgtagttgtg gttgaagatt ttgtagaagc agagttggga      2280
     tcattgtgat tgatgactca gtggaagtcc ctgcagttgc actagtctgt tcagtgggca      2340
     tcatggctac tattgtggtt gtatactcag tgagggcatt agcagtggca attttggttg      2400
     tacccactat ggaagtaccc acagtcattg tggtagtctg tttagtttca gtgctagcta      2460
     ctattgtgct tatgggtaca gtagaaggga gagtggtggc tgttgtaatt gtagccacag      2520
     tggaagggcc tgatgttatt atggtggctg tttcaatgga gatactggtt gctattggtg      2580
     ttgtagatca agtagaggac gtagtagtgc tcaccatggt ggcagcctca gtaaaagtgc      2640
     tggcaattag gtggcttgtt ggattgaagt ggtgatttct gaggaagcag tggtggtggc      2700
     caatgtggtt gaagactcag cagaagttgc tgcacttgtg gcaaactggt ccgtttcaat      2760
     gctggctgtt gtagtgcccg gctcagcaga ggtggcagtg gtggtaattg cagtagcagt      2820
     atcagttgaa gtgcctgcag ttgttgtggc agactgttca gttgcagtgc tggctgttgt      2880
     tgtggtttca gggtcagtac agatggcagt ggtggctgtg gtggttgtag cttcagtgga      2940
     agtgcctgca cttgttgtag cagactgttc agttgcagtg ctggctgttg ttgtggttgt      3000
     gggttcagta aagttggtag cggtggctgt tgtggttgta gcctcagaga aagtgcctgc      3060
     agttgttatg gcagactatt cagttgtagt gctggctgct gttgtagtgc ttggttcagt      3120
     agagttggta gtggtggctg tggtcgttgt agtctcagtg gaaaggccag cagttgttgt      3180
     ggcagactgt tcagttgctg tgccaggtgt tgttctacta ctggattcgg aagaggtggc      3240
     agtggtggct attgtggtag aagtgtcagt gaaagtgcct gcagttctgg tggcagactg      3300
     ttcagttaca gtgcttgctg tggttgtcat tgtgggttca gtagaagtgg tagtggtggc      3360
     tgttgtggct gttgtctaat tggaagtgcc tgtagttgtg gtggcagact attcagttac      3420
     agtgctggct gttgtggtgg tgggttcagt agaggtggta gtggtgactg ttgtggttgc      3480
     agcctcagtg gaagtgcctg cagttgcggt gggagacagt tcagttgcag tgctggagtt      3540
     tgtagtgctg ggttcagtag acgtggcagt ggtgtctgtt gtggttgtaa ctgcagtgga      3600
     aataccccca gttgttgtgg cagtggtgtc tgttgtggct gtaactccag tggaagtacc      3660
     ttcaattgtt gcagtagact gttcagttgt agtgctggct gttgttgtgg ttgtgggttc      3720
     catagaggtg gtagtggttg ctgttgtagt tgcagcctca gtggaagtgt cagcagttgt      3780
     aatggcagac tgttcagtag cagtgcttgc tgtggttgtc attgtgtgta cagtagaagt      3840
     ggtagtggtg gttgtcgtga ttgtagtctc agggcagtgg ctgcagttgt ggtagcagac      3900
     tcttcacttg cagtgcttgc tgtggttgtc atggtgggtg tcttggtaga agtggcagtg      3960
     gtgactgctg tggatgtagc ctcagtggaa atgcctactg ttttggtggc agactgttca      4020
     gttgtagtgc tggctgttgt tgtggttgtg ggttcagtag aggtggcagt ggtggctgct      4080
     gtggttgtgg tctcagtagc agtggctgca gttgtggtgg cagactgttc agttgcagtg      4140
     cttgctgtgg ttgtcattgt gggttcagca gaagtggcag tggtggctgt tgtggttgtt      4200
     gtctcagtgg aagtgcctgc agttgtggtg gcagactgtt cagttgcact gctggtggga      4260
     tc                                                                     4262
//


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