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EBI Dbfetch

ID   AC079126; SV 3; linear; genomic DNA; STD; HUM; 2021 BP.
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AC   AC079126;
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DT   21-AUG-2000 (Rel. 64, Created)
DT   26-FEB-2004 (Rel. 78, Last updated, Version 8)
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DE   Homo sapiens BAC clone CTB-45E23 from Y, complete sequence.
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KW   HTG.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-2021
RX   PUBMED; 9847074.
RA   Wilson R.;
RT   "Toward a complete human genome sequence";
RL   Genome Res. 8(11):1097-1108(1998).
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RN   [2]
RP   1-2021
RA   Paulson E., Abbott A., Mishra S.;
RT   "The sequence of Homo sapiens BAC clone CTB-45E23";
RL   Unpublished.
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RN   [3]
RP   1-2021
RA   Waterston R.H.;
RT   ;
RL   Submitted (18-AUG-2000) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
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RN   [4]
RP   1-2021
RA   Waterston R.H.;
RT   ;
RL   Submitted (21-SEP-2000) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
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RN   [5]
RP   1-2021
RA   Waterston R.;
RT   ;
RL   Submitted (08-NOV-2000) to the INSDC.
RL   Department of Genetics, Washington University, 4444 Forest Park Avenue, St.
RL   Louis, Missouri 63108, USA
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DR   MD5; 11a26583e1d29a3617cae4d41e7edce3.
DR   ENA-CON; GL000181.
DR   Ensembl-Scaffolds; AC079126.3:1-2021; homo_sapiens.
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CC   On Sep 21, 2000 this sequence version replaced gi:9945298.
CC   -------------- Genome Center
CC   Center: Washington University Genome Sequencing Center
CC   Center code: WUGSC
CC   Web site: http://genome.wustl.edu/gsc
CC   Contact: sapiens@watson.wustl.edu
CC   -------------- Summary Statistics
CC   Center project name: H_RG045E23
CC   --------------.
CC   NOTICE:  This sequence may not represent the entire insert of this
CC   clone.  It may be shorter because we only sequence overlapping
CC   clone sections once, or longer because we provide a small overlap
CC   between neighboring data submissions.
CC   This sequence was finished as follows unless otherwise noted:
CC   all regions were double stranded, sequenced with an alternate
CC   chemistry, or covered by high quality data (i.e., phred quality >=
CC   30); an attempt was made to resolve all sequencing problems, such
CC   as compressions and repeats; all regions were covered by sequence
CC   from more than one subclone; and the assembly was confirmed by
CC   restriction digest.
CC   MAPPING INFORMATION:
CC   The position of this clone was established as part of a
CC   collaboration between the Human Chromosome Y Mapping Project
CC   (Tomoko Kawaguchi, Helen Skaletsky, Laura G. Brown, Steve Rozen,
CC   and David C. Page at the Whitehead Institute for Biomedical
CC   Research, Cambridge MA) and the Washington University Genome
CC   Sequencing Center, St. Louis MO.
CC   SOURCE INFORMATION:
CC   Clone CTB-45E23 is from the first release of the human BAC library
CC   CITB-978SK-B.  The library contains cloned DNA from the male
CC   fibroblast cell line 978SK.  See:  Shizuya et al., Proc. Natl.
CC   Acad. Sci. USA 89:8794-7 (1992); U-J. Kim et al., Genomics 34:213-8
CC   (1996).  This clone is available from Research Genetics, Inc.
CC   (http://www.resgen.com).
CC   VECTOR:  pBeloBAC11
CC   Selection:  chloramphenicol
CC   NEIGHBORING SEQUENCE INFORMATION:
CC   The clone sequenced to the left is RP11-403P11, 200 bp overlap.
CC   Actual start of this clone is at base position 84376 of
CC   RP11-373F14; actual end is at base position 2021 of CTB-45E23.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2021
FT                   /organism="Homo sapiens"
FT                   /chromosome="Y"
FT                   /map="Y"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CITB-978SK-B"
FT                   /clone="CTB-45E23"
FT                   /db_xref="taxon:9606"
FT   repeat_region   1..1245
FT                   /rpt_family="ERV1"
FT   repeat_region   1281..1359
FT                   /rpt_family="Alu"
FT   repeat_region   1368..2020
FT                   /rpt_family="ERV1"
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SQ   Sequence 2021 BP; 595 A; 460 C; 448 G; 518 T; 0 other;
     gggtccaggg actgttgtgg gttcttgggc aagaggtgtt tttgctgctg cattggtgag        60
     cacaactatt ctgatcagca gggtccaggg accattgtgg gttcttgggc agggggagaa       120
     acagacaaac caaaactgct ggttgttttg tctttcagat gggaaactct caggtatcaa       180
     caggctcacc cttggaattc atcttaagcc actgggacca atatgaccca caaaccctga       240
     aaagcaggag gctcattttt ttctgcacta tggcctggcc ccaatattct ctctctgatg       300
     gggaaaaatg gccacctgag ggaagtataa attacaatac tatcctgcag cttgactttt       360
     tctgtaagag ggaaggcaaa tggagtgaaa tgccttatgt ccaagctttc ttttcattga       420
     aggagaatac acaactatgc aaagcttgca atttacatcc tagaggagga cctttcaggt       480
     taccttcata cccagcctcc gctaatctcc cttgcccaga aggaaacaag aaaagaaatc       540
     tccaaaggac cacaaaaacc cccaggctat tagttatgtc cccttcaagc tataagggga       600
     ggggaatttg gcccaaccag ggcacatgtc cccttctccc tctctgattt aaagcagatc       660
     aaggcaaacc tggggaagtt ttcagatgat cctgataggt acatagatgt cctacagggt       720
     ctagggcaaa ccttcaatct cacttggaga gacatcatgc tattgttaga tcaaaccccg       780
     gcctttaatg aaaagattgt ggctttagct gcagcctgag agtttggaga tacttgctgt       840
     cttagtcaag taaataatag aatgacagct gaagaaaggc tcaaattccc taccattcaa       900
     caagacattc cctgtatgga tccccactgg gaaattgact cagatcatgg ggactgggag       960
     tcataaatat ctattgacct gtgttctaga aggactaagg agaattagga agaaaccatg      1020
     agttattcaa tgatgtccaa cttaactcag ggaaaagaag aaaatccttc tgctttcctt      1080
     gagcagctgt gggaggcctt aagaaaatat actgccctgt cacccaacta actcaagggt      1140
     cagttgattc taaaagataa atttattacc caatcagcca cagatatcag gagaaaattc      1200
     caaaagcaag ccctgggccc tgaacaaaat ctggaggcat tattattatt attattatta      1260
     ttattattat tattattaca ttttgagaca aagtctttct ctgttgccca ggctggagtg      1320
     gagtgcagtg tcaccatctt ggctcactgc aagctctgcc atctggtggc attataaaac      1380
     ctggcaacct cggtattctg taatagggac caagaggaac aggcccaaaa ggaaaagcga      1440
     gatcagagac aggccacagc cttagtgatg gcctcaggca aacaaatctt ggtggttcag      1500
     agaggacaga aaatggagca ggccaatcac ctgatagggc tttttacaag tgtggtttat      1560
     aaggacattt ttaaaaagat tgtccaatga gaaaaaggcc actccctcat ccatatgcac      1620
     aatgctgagg caatcactag aaggcacact gcctcagagg gcaaaggttc tctggaccag      1680
     gagcccccaa ccagatgaac caacaacagg actgagggtg actagggaag caccagctca      1740
     tatcatctcc ctcactgagc cccgggtaca tttaaccatt aaggactagg aaattgactt      1800
     cctcctagac actggtgcag ccttctcagt gttaatctcc tgtcacagat gactgtcctc      1860
     aaggtccatt accatccaag gaatcctggg acagcctgta accaggtatt tctcccacca      1920
     cctcagttgt atttgggaga ctttgctcct ttcacattcc tttcttgtta tgcctgaaag      1980
     tctcacaccc ttattaggga gggatatatt agccaaagct t                          2021
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