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EBI Dbfetch

ID   AC074181; SV 1; linear; genomic DNA; STD; HUM; 7119 BP.
XX
AC   AC074181;
XX
DT   18-JUL-2000 (Rel. 64, Created)
DT   26-FEB-2004 (Rel. 78, Last updated, Version 6)
XX
DE   Homo sapiens BAC clone RP11-515L2 from Y, complete sequence.
XX
KW   HTG.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-7119
RX   PUBMED; 9847074.
RA   Wilson R.;
RT   "Toward a complete human genome sequence";
RL   Genome Res. 8(11):1097-1108(1998).
XX
RN   [2]
RP   1-7119
RA   Nguyen C., Maupin R., Harper M.;
RT   "The sequence of Homo sapiens BAC clone RP11-515L2";
RL   Unpublished.
XX
RN   [3]
RP   1-7119
RA   Waterston R.H.;
RT   ;
RL   Submitted (15-JUL-2000) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [4]
RP   1-7119
RA   Waterston R.;
RT   ;
RL   Submitted (30-SEP-2000) to the INSDC.
RL   Department of Genetics, Washington University, 4444 Forest Park Avenue, St.
RL   Louis, Missouri 63108, USA
XX
DR   MD5; 1ff21df9eb917d31136bacf1e42a463e.
DR   ENA-CON; GL000181.
DR   Ensembl-Gn; ENSG00000129824; homo_sapiens.
DR   Ensembl-Scaffolds; AC074181.1:1-7119; homo_sapiens.
DR   Ensembl-Tr; ENST00000430575; homo_sapiens.
DR   GOA; C9JEH7.
DR   HGNC; HGNC:10425; RPS4Y1.
DR   InterPro; IPR000876; Ribosomal_S4e.
DR   InterPro; IPR002942; S4_RNA-bd.
DR   InterPro; IPR005824; KOW.
DR   InterPro; IPR013843; Ribosomal_S4e_N.
DR   InterPro; IPR013845; Ribosomal_S4e_central_region.
DR   InterPro; IPR018199; Ribosomal_S4e_N_CS.
DR   UniProtKB/TrEMBL; C9JEH7; C9JEH7_HUMAN.
XX
CC   -------------- Genome Center
CC   Center: Washington University Genome Sequencing Center
CC   Center code: WUGSC
CC   Web site: http://genome.wustl.edu/gsc
CC   Contact: sapiens@watson.wustl.edu
CC   -------------- Summary Statistics
CC   Center project name: H_NH0515L02
CC   --------------.
CC   NOTICE:  This sequence may not represent the entire insert of this
CC   clone.  It may be shorter because we only sequence overlapping
CC   clone sections once, or longer because we provide a small overlap
CC   between neighboring data submissions.
CC   This sequence was finished as follows unless otherwise noted:
CC   all regions were double stranded, sequenced with an alternate
CC   chemistry, or covered by high quality data (i.e., phred quality >=
CC   30); an attempt was made to resolve all sequencing problems, such
CC   as compressions and repeats; all regions were covered by sequence
CC   from more than one subclone; and the assembly was confirmed by
CC   restriction digest.
CC   MAPPING INFORMATION:
CC   The position of this clone was established as part of a
CC   collaboration between the Human Chromosome Y Mapping Project
CC   (Tomoko Kawaguchi, Helen Skaletsky, Laura G. Brown, Steve Rozen,
CC   and David C. Page at the Whitehead Institute for Biomedical
CC   Research, Cambridge MA) and the Washington University Genome
CC   Sequencing Center, St. Louis MO.
CC   SOURCE INFORMATION:
CC   The RPCI-11 human BAC library was made from the blood of one male
CC   donor, as described by Osoegawa,K., Woon,P.Y., Zhao,B., Frengen,E.,
CC   Tateno,M., Catanese,J.J. and de Jong,P.J. (1998) An improved
CC   approach for construction of bacterial artificial chromosome
CC   libraries.  Genomics 51:1-8.  The clone may be obtained either from
CC   Research Genetics, Inc. (http://www.resgen.com) or Pieter de Jong
CC   and coworkers at the Roswell Park Cancer Institute
CC   (http://bacpac.med.buffalo.edu)
CC   VECTOR:  pBACe3.6
CC   NEIGHBORING SEQUENCE INFORMATION:
CC   The clone sequenced to the left is RP11-400O10, 200 bp overlap; the
CC   clone sequenced to the right is RP11-414C23, 200 bp overlap.
CC   Actual start of this clone is at base position 110296 of
CC   RP11-400O10; actual end is at base position 99148 of RP11-414C23.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..7119
FT                   /organism="Homo sapiens"
FT                   /chromosome="Y"
FT                   /map="Y"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="RPCI-11"
FT                   /clone="RP11-515L2"
FT                   /db_xref="taxon:9606"
FT   repeat_region   1..238
FT                   /rpt_family="Retroviral"
FT   repeat_region   267..585
FT                   /rpt_family="L1"
FT   repeat_region   591..777
FT                   /rpt_family="LTR54"
FT   repeat_region   827..919
FT                   /rpt_family="L1"
FT   repeat_region   920..2079
FT                   /rpt_family="L1"
FT   repeat_region   2080..2107
FT                   /rpt_family="(CA)n"
FT   repeat_region   2108..2245
FT                   /rpt_family="L1"
FT   repeat_region   2432..2452
FT                   /rpt_family="AT_rich"
FT   repeat_region   2580..2751
FT                   /rpt_family="L1"
FT   repeat_region   2771..2842
FT                   /rpt_family="Alu"
FT   repeat_region   2867..3995
FT                   /rpt_family="L1"
FT   repeat_region   3937..4805
FT                   /rpt_family="L1"
FT   repeat_region   4806..5104
FT                   /rpt_family="Alu"
FT   repeat_region   5168..5211
FT                   /rpt_family="A-rich"
FT   repeat_region   5496..5647
FT                   /rpt_family="MER4-group"
FT   repeat_region   5649..6137
FT                   /rpt_family="L1"
FT   repeat_region   6138..6429
FT                   /rpt_family="MER4-group"
FT   repeat_region   6431..7062
FT                   /rpt_family="L1"
XX
SQ   Sequence 7119 BP; 2536 A; 1227 C; 1291 G; 2065 T; 0 other;
     gatttatatc ccgatcattt tccctccccc tgtgctctca ggctatagat gatttgacta        60
     tttctttacc tcctgctttt agcctaatta gtattttagt gagctctctt tattacctga       120
     ttggttggat gtgagctgag ttacaagccc cctgtttatt gatgggtgca gtcaccttcc       180
     ccatagaggc ttaggaattc ttagtcggcc taggaaatcc agctagtcct gtttctcact       240
     agttatatga aacttttcat gtaaaatttg tcaattttgt tattttttat acagccagca       300
     ttttgtttta ttgattgtct ctactattct cagtttcact gaatccaccc taatcgttat       360
     tattttctat cttatgcttg tttgtggttt ggttttgctt ttcttttgca gtgtcactag       420
     atagaaggtt aggttattga tctgaggtct tctcatttaa tgtaggcatt tactgccaaa       480
     ctttttctct aagtcatgct ttagatgcat tttgcaagtt ttggtgtgtc aatttttttc       540
     atttattttt aaagtatttt ctgttttccc ttttgatttt cttctcataa tgtcaagtaa       600
     aaattatagg atgttattga actatgcttc tgcagtaggt ccgaaaagac cagactaaaa       660
     attaaactgg ggtcacacat gctaatgttc cgcatcccca aatgtgaatt aaattatctg       720
     accttccaac aaataaaaag agaaatgaca gtcaatttcc caaacaagcc agttttaaat       780
     tttcagggtc tagttcaaaa acgatgctgt aaaatcgagc tgacttacag acatacagca       840
     ccaagatgat catcagcaac atcccagaac tcaaatgtga ggacaagaca gatgcaagga       900
     tcacagaaaa gtgaaagaca agggagacat atccatgagg ataggcagaa acaaagagga       960
     gcagtgagat taccatccct atccctggaa aatgtgctct gtaacttggc caaagagatg      1020
     ccaaatcaga gtggcttgtc aggagcacta tgatgcaaga agtgcatttc ataggtaccc      1080
     tggccaaaaa tgcctaggta gcattcccac tctgctggga tatccccttt ggaacctccc      1140
     tcattcaaac tgggcagtac tcgaattatt taatacaccc aagcaaacct gggcttaaga      1200
     tacaaactag agttaaaaag aggcagcaac ttagcagtaa agaatttaag caaatatatc      1260
     caataaaaag caaaagaagc cagacgggta agactgcaat atgtaaccta tccttcaatg      1320
     caaagacatg cataagaaac aacagcaaag aggaaactat gacctttcca aacagagaaa      1380
     acaagaaaaa agtgactgac tctaacaaga tgccaatatg tgagctctct aaccaataat      1440
     tcaaagtaga attttaagga aactcaataa tcttcaacac aatacagaaa agccatcaaa      1500
     aacttatcag agaaatttaa tggacattca aatatataac tttaaaagca tgcaaatctt      1560
     gaaactaata aatacttttg ataaactgaa aaatttgtta gaggttctta acagcaggat      1620
     ggattcagca gaataaggaa ttagctcgta aacaggctat ttgaaaacac acagaggaaa      1680
     attaaaaaaa aaaaggataa aaaggaatag aaaattacct caaagaaaaa acaaacttca      1740
     gaattattgg tgttcaagac aaagttgagc aacagcaagg ggtgggggac ttattcaaat      1800
     aaatagtaat aaaaaagttt ccaaaattta acaagatgta ttcatgtacg agaagttcag      1860
     agaacaacaa acagattcaa ttcaaagaag tctaccccaa ggcatataac aataaaactc      1920
     taaaagatca aagacagaga ggggacccta aaagcagcaa gagaaaacca aataacatca      1980
     aggagctcag aattttctgg gaacagactt ctcagcagag accatacaga ccaggagaga      2040
     gcagacaata ttttcaaagg gctaaaaaca ggggaaaaga cacacacaca cacacacaca      2100
     cacacacccc taccatccaa gaatactgtg ttcaaaaagc tagtctttac atatgaagga      2160
     gagataaatt gttattcaga gtgacaaatc agagaagtca acaccatcag aactacttta      2220
     caagacatgc taaaaataac tcttcttctt tggccagggt acctgtgaaa taataaagca      2280
     ccatgcaaaa agaatgaatt tgactgtata aaagccactg gttaaattta gtacacagac      2340
     aaactgagaa atgtaattgt aatatgcaat tcacttctaa ttgtagtagg aagtccaaat      2400
     gttgatagct acaataacat gttgaggtga gtaatataaa aatatataaa ttgatacaaa      2460
     taaaagtcaa aatgtagagg tgattgaatt aatgtccaga atttttcttt atgcctttgt      2520
     ttctgtataa tctaaaatta gtcgtcttca cttaaaataa cttactgtaa gatttttttt      2580
     ttgtaagcct catggtaacc acaatgcaaa catctttaag agacaatctg aaaagcaatg      2640
     aattaagcca cagtaccaga gacaatcact taaccacaaa gaaagacagt gagaaaggga      2700
     aaacagttta aaaagaatgt gaaaacttgc cacaaaatgg cagtagtaag tgcttttttt      2760
     aaaaaaaata tttttttgag acaggatctt cttctgtcac ccagcagagg gcagtggcaa      2820
     aatcatgact cactgcagct tcaccaaacc cagtgtaagt ccttcataac agtggatgta      2880
     attggaatca attgatcagt taaaaggcat agagtggctg aatggattca gaaatgagac      2940
     ccaattttat gctacctaca agaaacccac tttacctata gagacacaga gactgaaaac      3000
     aaacaagtgg gagaaaatat tccatgcaat tggaaagcaa aaatgagtag aagtagttat      3060
     gattatgtca gattaaataa atgactaatc aaacacaaaa agaaacaaaa aaaggtcact      3120
     atataatgat tcagcaagag gatataacag ttacaaatac atttgcacac aacaccagag      3180
     cttccaagta tatacagcaa ataatggatc tcaagggaga gacagaatgc aaataataat      3240
     agtaggtgac tatgaatcca ttctcagtaa tgatggattc acacagaaaa tcaacaaaga      3300
     aatatcagag ttaaacagtg tactagacat aataggctta aatgacattt acagaacatt      3360
     ttatccaact gctgcacaga attttatcag cacgtgaaat attctgcaga agagattata      3420
     tcttaggcca cttaacaagt ctgaaaaaac tcaaaaaaat aaaaataata tcaggtatct      3480
     tgtctgacca cagtggaata tcactagaaa tctgtaacaa gaagaatctt gggaaataca      3540
     caaatacgtg gaagctaaac actatgttcc tgaatgacca gttggtcagc atagaaatta      3600
     aggaaacatt tatttttttt ttcttttatt gaagtcaaaa gacagtgaag aaatttaatt      3660
     tttttgaagc aaaggaacat ggaactacaa cacaccaaat tctgtgttta gcaaaaacag      3720
     tactaagctg tactaaatgg gaagtttata gcaatgaaca actatattga aaaagtaaga      3780
     agacatcaaa ataacaacct aatggttcac ctcaaggaac taggaaagta agaacaaacc      3840
     aaacccaagt agaaagaaga aataataaag atcacagcat atataaataa aattgagaaa      3900
     atacaaaata ttaatgaaat aattgttttt aaagataaat tgacaaaacc ttatcagact      3960
     aagaaaagag gagattgaat aaaatcagaa ataaaaaaga tgtaacaact gagaccaccg      4020
     aatacagacc ctggatacgt acaagttcca aggtgaacca tgatgatatg gaaaacctca      4080
     acacaccagt aatgagtaat gttattaaag ccataagaaa aagtcatccg tgaaagaaaa      4140
     gcacaaaatt gatgccttca ctgctaaatt ctatgaaaca tctaaggaag aacaaatatc      4200
     agttctactc aaactcctta aaagtaaatg gaagaggagg gaatacttcc aaactcattc      4260
     tgtaggttta gcattaccct gataccgaaa ccagacggga acacaacaaa aagagaaaaa      4320
     ctacatgcca gtagcactga taaacttaga tgcaaaaaat cctcaataaa ttactaagaa      4380
     gccaaatttg acattaagaa tattatttac catgatcaaa tgtcctatat cccagggatg      4440
     aaataatggt tcaacataca caaatcggta aatgtgatac attaacagaa gaaagaacaa      4500
     aaaccacatg attatttcaa cggatgcaaa ataaaagctc ttaaataaaa tttaacaaca      4560
     ctttatgaca aaagacttaa actggccgta gaagtaatga tatacctcaa aataatacag      4620
     gacatgttta catctaaaca gtaactttat ggacaaattt acagctaaaa tcatatttta      4680
     cagaaaaaaa aattggaggt ctttttttgt aaaatctgta acaagagaag atgctcactt      4740
     ttaccacttt actataatac tagaagtcct ggccagagga gtcaggcttg aaaaagaaat      4800
     aaaggggttg ggcgtggtgg ctcacgcttg taatcccagc actttgggag gctgagaggg      4860
     gggcatcgcg agatcaggag atcgagacca tcctggctaa caccgtgaaa ccccatctct      4920
     actaaatata aaaaaaatta gccgggcgtg gcagcgtggg cttgtagtcc cagctacttg      4980
     ggaggctcag gcaggagaat ggcgtgaacc cgggaggtgg agcttgcagt gagctgagat      5040
     cagcgccact gcactccagc ctgggcaact aagcgagact ctgtctcaga aaaaaaaaaa      5100
     aaaagattga tattcataat gtgtaaaatg tgtctacaaa aaaaggagaa ggaagagcaa      5160
     ctccaaaaaa aacaaacaaa caaaaaaaaa aaaaaacaag aacaacaaca acaaagcaac      5220
     aggttgttcc aaggaaattt tcagaaaaga aaaattgcat agctaatata ccacaaagaa      5280
     attataaaat taaaacaatg ttagcatttc acagttcctg ggttgacaga cataaacagt      5340
     atcaagagtt ggttggctaa ggagcaggga atggagaaca ctcttcttgc ttgaaagaat      5400
     gactcctggt atactgggca tattatggta aaataatgta aaaaccatta gtaaatggtt      5460
     tttactaatg taaacccatt agttttatgg cttaatgaaa caggacaaat tattttataa      5520
     aactgatata tataatcata ttttaataaa catagacata gaccctacaa gctttgaaac      5580
     ttgagaacgt ttaatttgtc ttatctgaat tcctttctca gaaaactaac catctggcct      5640
     cccaggtttc agacacatag tttgtgaaga tttttctccc actctgtgtg ttgtctgttt      5700
     tctctattga ttatttcttt tgcattgcag aggagctttt tagtttaatt aggttacatc      5760
     tatttatttt tgttttttta aattatttgt attgagtttg cttttgtgtt cttggtcatg      5820
     aactctttgc ctaagccaat gtctagaagg gtttttccaa tgttatcttc tagaattttt      5880
     atggttttat gttttagatt taaggctttg attcatcttc agttgacttt tgtgtaaggg      5940
     gagagttgag gatccagttt cattcttcca catgtggctt accagttatc ccagcaccat      6000
     ttatttaata tggtgtcttt ttccttccta tgtttttgtt tcctttgtgg aagatcagtt      6060
     ggctgaaaat atttggcttt atttctgggt tctctatttt ttccattggt ctttgtgcct      6120
     gtatttatac caataccgag acagccaggg ggtagggagt ccctggagaa acgccaacca      6180
     gtctgcccac tgaagtgggg ggaggctctg ggagctcatc acgtttacag ctgggaggaa      6240
     cctggctcct cgtcttctag gaggggaatc tggccttgtg aaagatccct gtttcccttt      6300
     attttcccct ttcacccaat aaaaccctcc attattcacc ctttaaacca cctgtcaacc      6360
     caaatttctg tggctgtggg atggacagga aaccagtctt tagctgaact aatgaaaagt      6420
     cctgcaacaa taccatagct gttttggtaa ttatagcctt gtagtatagt ttgaagttgg      6480
     gtactgtgac acctccagat ttgttctttt tgcttagtgt tgctttagct atgagggctc      6540
     ttttttgttt ccatatgaat tttaggattg tttttttcta gttctgtgag gaaagatagt      6600
     ggtattttga tgggaattgc atcaaaaatt tgtatattgc tttgatacta tactcatttt      6660
     cacaatattg attctaccca tccaggagca tggaatgtgt ttccatttgt ttgtgttatc      6720
     gtctgtgatt tttttcagca gtgtattgta gttttccttg tagagatctt tcacatcctt      6780
     ggttaggtat atttctaagt attttaactt attttttggc agctgtcata aaagtgattg      6840
     agttattgat ttgaatctta gcttggtcat tgttggtgtg tgcactgtgt gcattgattt      6900
     tgtatcatga aactttactg aattcattta ttggatctag gagctttttg gatgagtctt      6960
     tagggttttc taggtataca atcatatcat cactgaacag tgacagtttg actttctatg      7020
     tattgatttg gatgcccttt gtttctttct gttgtttgat tggctaatac ctattcactt      7080
     tcccacagtg gtttgaaatt ctggaggcag caactacta                             7119
//


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