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EBI Dbfetch

ID   AC007042; SV 3; linear; genomic DNA; STD; HUM; 6907 BP.
XX
AC   AC007042;
XX
DT   15-MAR-1999 (Rel. 59, Created)
DT   26-FEB-2004 (Rel. 78, Last updated, Version 15)
XX
DE   Homo sapiens BAC clone RP11-399H17 from Y, complete sequence.
XX
KW   HTG.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-6907
RX   PUBMED; 9847074.
RA   Wilson R.;
RT   "Toward a complete human genome sequence";
RL   Genome Res. 8(11):1097-1108(1998).
XX
RN   [2]
RP   1-6907
RA   Nelson D., Wohldmann P., Harris A.;
RT   "The sequence of Homo sapiens BAC clone RP11-399H17";
RL   Unpublished.
XX
RN   [3]
RP   1-6907
RA   Waterston R.H.;
RT   ;
RL   Submitted (06-MAR-1999) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [4]
RP   1-6907
RA   Waterston R.H.;
RT   ;
RL   Submitted (15-MAR-2000) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [5]
RP   1-6907
RA   Waterston R.H.;
RT   ;
RL   Submitted (20-MAY-2000) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [6]
RP   1-6907
RA   Waterston R.H.;
RT   ;
RL   Submitted (22-MAY-2000) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [7]
RP   1-6907
RA   Waterston R.H.;
RT   ;
RL   Submitted (23-MAY-2000) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [8]
RP   1-6907
RA   Waterston R.H.;
RT   ;
RL   Submitted (12-JUN-2000) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [9]
RP   1-6907
RA   Waterston R.;
RT   ;
RL   Submitted (30-SEP-2000) to the INSDC.
RL   Department of Genetics, Washington University, 4444 Forest Park Avenue, St.
RL   Louis, Missouri 63108, USA
XX
RN   [10]
RP   1-6907
RA   Waterston R.H.;
RT   ;
RL   Submitted (06-JUN-2001) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [11]
RP   1-6907
RA   Waterston R.H.;
RT   ;
RL   Submitted (03-JUL-2001) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [12]
RP   1-6907
RA   Waterston R.;
RT   ;
RL   Submitted (01-MAR-2002) to the INSDC.
RL   Department of Genetics, Washington University, 4444 Forest Park Avenue, St.
RL   Louis, Missouri 63108, USA
XX
DR   MD5; bfa19e442c5483de19c6a7ca4a3c9c68.
DR   ENA-CON; GL000186.
DR   Ensembl-Scaffolds; AC007042.3:1-6907; homo_sapiens.
XX
CC   On Jun 6, 2001 this sequence version replaced gi:7243920.
CC   -------------- Genome Center
CC   Center: Washington University Genome Sequencing Center
CC   Center code: WUGSC
CC   Web site: http://genome.wustl.edu/gsc
CC   Contact: sapiens@watson.wustl.edu
CC   -------------- Summary Statistics
CC   Center project name: H_NH0399H17
CC   --------------.
CC   NOTICE:  This sequence may not represent the entire insert of this
CC   clone.  It may be shorter because we only sequence overlapping
CC   clone sections once, or longer because we provide a small overlap
CC   between neighboring data submissions.
CC   This sequence was finished as follows unless otherwise noted:
CC   all regions were double stranded, sequenced with an alternate
CC   chemistry, or covered by high quality data (i.e., phred quality >=
CC   30); an attempt was made to resolve all sequencing problems, such
CC   as compressions and repeats; all regions were covered by sequence
CC   from more than one subclone; and the assembly was confirmed by
CC   restriction digest.
CC   MAPPING INFORMATION:
CC   The position of this clone was established as part of a
CC   collaboration between the Human Chromosome Y Mapping Project
CC   (Tomoko Kawaguchi, Helen Skaletsky, Laura G. Brown, Steve Rozen,
CC   and David C. Page at the Whitehead Institute for Biomedical
CC   Research, Cambridge MA) and the Washington University Genome
CC   Sequencing Center, St. Louis MO.
CC   SOURCE INFORMATION:
CC   The RPCI-11 human BAC library was made from the blood of one male
CC   donor, as described by Osoegawa,K., Woon,P.Y., Zhao,B., Frengen,E.,
CC   Tateno,M., Catanese,J.J. and de Jong,P.J. (1998) An improved
CC   approach for construction of bacterial artificial chromosome
CC   libraries. Genomics 51:1-8. The clone may be obtained either from
CC   Research Genetics, Inc. (http://www.resgen.com) or Pieter de Jong
CC   and coworkers at http://www.chori.org
CC   VECTOR:  pBACe3.6
CC   NEIGHBORING SEQUENCE INFORMATION:
CC   The clone sequenced to the left is RP11-462A19, 200 bp
CC   overlap,clone sequenced to the right is RP11-568H21, 200 bp
CC   overlap.   Actual start of this clone is at base position 51511 of
CC   RP11-462A19; actual end is at base position 68835 of RP11-537C24.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..6907
FT                   /organism="Homo sapiens"
FT                   /chromosome="Y"
FT                   /map="Y"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="RPCI-11"
FT                   /clone="RP11-399H17"
FT                   /db_xref="taxon:9606"
FT   repeat_region   232..255
FT                   /rpt_family="AT_rich"
FT   repeat_region   1274..1551
FT                   /rpt_family="CR1"
FT   repeat_region   1617..1655
FT                   /rpt_family="(CA)n"
FT   repeat_region   1660..2091
FT                   /rpt_family="MER2_type"
FT   repeat_region   2102..2140
FT                   /rpt_family="GA-rich"
FT   repeat_region   2138..2310
FT                   /rpt_family="(TAGA)n"
FT   repeat_region   2930..2957
FT                   /rpt_family="AT_rich"
FT   repeat_region   2946..3067
FT                   /rpt_family="Alu"
FT   repeat_region   3439..3929
FT                   /rpt_family="MER1_type"
FT   repeat_region   4207..4424
FT                   /rpt_family="ERV1"
FT   repeat_region   5307..6295
FT                   /rpt_family="L1"
FT   repeat_region   6279..6315
FT                   /rpt_family="AT_rich"
FT   repeat_region   6374..6518
FT                   /rpt_family="MIR"
FT   repeat_region   6679..6906
FT                   /rpt_family="Alu"
XX
SQ   Sequence 6907 BP; 2269 A; 1203 C; 1262 G; 2173 T; 0 other;
     atctttcaaa aagtgtgatg ttgcaagaat ttccatgttt ttactaataa ataaatttct        60
     ttctcatttc tatttctaca aacatgcaca tagaacatta aaatatgttt ttccaatgtg       120
     ttttctattt gaaaataaca aattgataag tgtcttttca ggttctatga tgatgtttat       180
     aattttttct ctatgaattc ttatctttaa aatgaaatca atatatttcc gttttataat       240
     aaattttttt tatttctagt gtgaacccca tgtaataagc atgcattaaa aaatgtattg       300
     ctatattata ctttcatatg ttccacttag acttagtcac attggtaagg tgagttgctt       360
     tatagctttc ttttgaaaac attcttaaat attcgtgcct ggaattatat aaaaatcaat       420
     aagtttttct ccttttcctg cattttagaa tgatttttaa aaacattgaa atgatctgtc       480
     ttttgaggtt cgaatagaat ttcaccctta atccattggt ctttgggggt attagggatc       540
     actccctgat aatttcttat ctttcttaga aataattata ctcagttttc aaaatctcct       600
     tggaatcaga ttagtaattc atatttttat agataactat tttgtggaac acaatcccat       660
     aatgcacccc tcccatctgt gtaaatttca ttgaatttct gcatccattt tgagtgagtg       720
     gtagagttac tcaaaagttc tttcaatgat gaggttttca gttctgttct tggatctctt       780
     tggtttgttt gtattcaggg aagagatcca ttagagatga ctgtgctcat tcataaacca       840
     cccattcagt cttttctaaa atctcactat cttttcctct tcagtattca cagtccttga       900
     ttcttctacc atagtgacta tgagacatgt gtaaataatc ttagaggaag attccataat       960
     ggtgccagac atttgtccct ctgcactttc taaatatcag cattctccaa gcttccagat      1020
     tggacacact tccttattta ttccaaatgc ttctctgcaa caatcttaat caaagcactt      1080
     gagatttaca tagacttaca tactaccaca ttcatacatt tctatcctaa ggttgttctt      1140
     gtttttgttc cttaaattta cttatacctc tcacttaaaa catgacaaaa catactttta      1200
     catctctttc atgctatgtt tgtttttctg tagtcttatg ctatgataat tatacaactt      1260
     gcttgggggc tcacattaag aaaattatat gctggttttg ttttatttct ttatgtcatg      1320
     actagggaga aaaatcaaag aagtttataa gcacagtatg tctgggtgaa caaagctttg      1380
     tgaattcagt agtatgtctg tggaatgcat gaaagctgag aaccatgtgg tagtatactt      1440
     agaatgcctt agggcttaac atagatacac tccccagagg tgtggtttta tgaataaatc      1500
     ttattgtcca ggcagatttc aagtttatca gggtgcagtg caagcctctg tgttgcatgt      1560
     tttctcaaag attaagtttc aaggaaactg ccatttaaaa gtttgaatga agatagacac      1620
     acatacacac acacatacac acacacacac acacatgatt taatccctga acaactctag      1680
     ggttaggagt gccacctttc tgtgcagttg aaaatgtata tatacctttt actcttcaaa      1740
     aacttaagta ctaatagtct actgttgaat gaacttctta ctgataacat caacagtcaa      1800
     ttaacacata ttttatatgt tggacatatc atactgtatt cttaacaata aagtaagcta      1860
     gagaaaagaa aatgttatta agaaaatgta aggaagataa tatatctact attcattaag      1920
     tggaagttaa tcatttttaa ggtcttcatc ctggtcaact tcaccttcag taggctgaag      1980
     agaagaaaga ggaggggttt gtcttgctgt ttcagaggtg gcaaaggagg aaggaaatcc      2040
     tcatgaaagt ggatccatga agtttaaacc tatgttgttc aagggccaat tatgtatgta      2100
     tagagagaga gagaaagaaa gagggagaga aagagggaga cagacagata tacagagata      2160
     gatagatgat agatagatag atagatagat agatagatag atagatagat atagatagat      2220
     gataggtaga taggatgggt gggtggatgg atgatgtatg tatgtatgta tggatggata      2280
     gatatgattg attgatggat gtatagatag gtgaaagaaa gaaaggaaga gagagatagg      2340
     caacctcaag tcttgaaatc attttaaaag tgaccaggaa gatcatatat cttctaggat      2400
     taaagaagga atatgatttg taagtaatgt cttgcaacta aaaagtttag atcacaaatt      2460
     agaaccttgc ctttgagcca aaactaatag gatagaattt aaatgtgata aacatggcat      2520
     gcttgtgtaa tactaacatg caatatgttg aaggttaatc tggttgtcct tcaaattaaa      2580
     acgggtcagg acttgacatc atgaatatga atatcacaga tgtcatgcta ggtgcagaaa      2640
     aggtgacttt tgaacatttc aagtggtctt tgccctgggt atttcttcct cctttctgtc      2700
     ttttttgcat tcacatcaat tttctaagtg ttccctgatt tctttttgaa tattaccaca      2760
     tctctattgc atgtagtcca gggtgataat aatcccaatt ttttttgtcc cccagcctag      2820
     ggtgagcaca tgcatatgac atcttgggga cataacccct tccacaaatt taaattttgt      2880
     ttagaggagt ggaagccttg gagagtattg atcctctata ccatgattgt ttttattatt      2940
     tactattttt atttttagag atgaggtctc actacgttac ccaggctgga ctcaaacttc      3000
     tgagcacaag caattctcct gcctcccaaa atgctgggac tacaggtgtg agccaccaca      3060
     tccagtctct ccaagacatt ctagcagctg aatcttgcct gactagactc ttccacatgg      3120
     aggctttcat tgtagtttct gctttcttac tcttgagtga ccatccccaa gcccaatttt      3180
     gaagcctcct actaatcctc agacagtcag aagtccttcc aaaaatgcac tcttgctttt      3240
     cttactaaac caaagctctt tcctccaacc aaagaagctc cactcttatg aaaatcacag      3300
     ttcatgtaga caacaatgtc cacaggttga agttctctct taatactgga gggagtttca      3360
     tttatttgtc attctctatg aattttgagt gtttattcca ccttaggcat tactctggca      3420
     gctctggata ctataaaaca acagtcccca acctttttgg caccagggac cagtattaat      3480
     gaagacaatt tttacatgga ccaggggttt ggggaatggt ttcaggatga ttcaagcaca      3540
     ttacatggat tgtgcactgt atttctatta tcattacatt gcaatatgta attaaataat      3600
     tatacaagtc accataatgt agaatcagtg agaaccctga gcttgttttc ctgcaactag      3660
     atatgcccat ctaggggtaa tgagagaatg acagatcatc aggcactaga ttctcataag      3720
     gagcacagaa tctggatccc tctcatgcac agttcacaac agggttcaca ttcctatgag      3780
     aatctaatgc tgctgctgat ctgacaagag gcagcgctct ggtagtaatg caagtgatgg      3840
     agtatgactg tgaatacaga tgaagcttca ctcatttgcc tgctgctcac ttcctgctat      3900
     atggcctggt tcctaagagg ccacagaccc actgggacct atggaataaa agatacagca      3960
     gataaacaca gctgccttca aggaaaaagt gatcttacat gcggaaacaa gtcatcttat      4020
     tcatttaaat tttgataact tcaaggaata aaaactaatt ttaaagaagt atcagctaaa      4080
     tcccctctaa acttcaatat tctactacaa tgggcacatg aagctacaat tatccccagt      4140
     gtctggggtt gtggggggaa tttgttccag gaaccctgtg gatacagaag tccatgtgtg      4200
     ggggcaggcc aaggcccttg gatccctaaa agtttgctga aaatcatgga tgtgagacag      4260
     attaatagga taaaaggcat aaaaatgtat ttgagtatat gtgggattct tcagagtgaa      4320
     gacccaaaga tacagaggaa ttgtccattt ttatgccttg attcaacaaa gtatggacag      4380
     ctatgtagaa ataggattgg acaaaaaggg cctgatctaa ttctggaaac attaaagaat      4440
     ttttaaaaat gccaaatttg cagtgttccc taccttccat catctccatg ggaaaaatta      4500
     cttaaataag aaaaaagatt atttttcagc aggatacttt tgttgccaat cacagagatt      4560
     ccctgagaat aatctggttg tctctcaaat taaaaagtgt caggacttga cctcattgcc      4620
     acaattaatc acagctgatt ttaatgtaat aaattagaaa taggaacact acagtgtttg      4680
     ttaatgaaac aaagtgacaa tagaaagaac ataccagaag tagttcttaa aagtccttct      4740
     atgctcttcc tagctgtagg gtcattttat agctgtgtac tttttagcac tttttgtgtg      4800
     tgttttagaa acaattttat ttacttcaag taagttccat atattccaca gtcatttttt      4860
     ctcagaattt tatactttga tagtcataat gccataattt ctttttacca aattaatttc      4920
     aaacgaaata gtctttttcc ttatgacaag atttcaaaat tgatttttac ctgagtattt      4980
     cagtaaatcc acttaaggtc cttaagtagt ttcaagtagg ttatgtggga tgttcaaaca      5040
     gacaataatg ttacctacaa tcatggttta tttttactat ctcttgccaa taattttaat      5100
     tattggccac attaccacat taggtagctc ttgtagaata aaattgatgc aaattgggta      5160
     ttcttgatta aattatcgct actcacaaat acagaagaat aagtcaacta tattatttgt      5220
     atgttatatt agatagtagt ttcacatata tatatgtaaa atataaagaa ttatcatatt      5280
     cctgttttgc taagatacaa caggtattct gcacagcaaa agaaactgcc atcagagtga      5340
     acaggcaacc tacaaaatgg gagaaaattt tcgcaaccta ttcatctgac aaagggctaa      5400
     tatccagaat ctacaatgaa ctcaaacaaa tttacaagaa aaaaacaaaa accccatcaa      5460
     aatgtgggcg aaggacatga acagacactt ctcaaaagaa gacatttatg cagccaaaaa      5520
     acacatgaaa aaattctcac gatcactggc catcagagaa atgcaaatca aaaccacaat      5580
     gagataacca tctcacacca gttagaatgg caatcattaa aaagtcagga aacaacaggt      5640
     gctggagagg atgtggagaa ataggaacac ttttacactg ttggtgggac tgtaaactag      5700
     ttcaaccatt gtggaagtca gtgtggcgat tcctcaggga tctagaacta gaaataccat      5760
     ttgacccagc catcccatta ctgggtatat acccaaagga ctataaatca tgctgctata      5820
     aagacacatg cacacatatg tttattgagg caccattcac aatagcaaag acttggaacc      5880
     aacccaaatg tccaacaatg atagactgga ttaagaaaat gtggcacaga tacaccatgg      5940
     aatactatgc agccataaaa aatgatgggt tcatgtcctt tgtagggaca tggaagaaat      6000
     tggaaatcat cattctcagc aaactatggc aagaacaaaa aaccaaacac cgcatattct      6060
     cactcatagg tgggaactga acaatgagaa cacatggaca caggaagggg aacatcccac      6120
     tctggggact gttgtggggt gggggaggct ggagggatag ctttaggaga tatacctaat      6180
     gctaaatgat gagttaatgg gtgctggaca ccagcatggc acatgtatac tatgtaacta      6240
     acctgcacat tgtgtacatg taccctaaaa cttaaagcat aataataata ataaagcatt      6300
     ttaatttatt tttatgtttt actaatatac agagttattt aggatataga tctgctgtgt      6360
     gtagaacatg accaacatct gtttgaactc agcttcaaca tctgtaaaaa tcatatgtta      6420
     tctactgtat aggtctgcaa tgagaatgga atgaaataac aagaaaagca cttttccagt      6480
     gtctcataaa tattaagggg taaataaatg acaattatac tactaagggg tggtatactt      6540
     aatcaatttt gaacattatt acttcattcc ctgacttgta ttgagttagg tttatatact      6600
     aaatggagat aatttgctca tgtgcttcac tatattaatg tattatcaaa tgctttacaa      6660
     acttttaaag ttagaggagg ttgggcaagg tggtgcatgc ctgtaatccc agtgtttcag      6720
     gaacacgagg cagaaggaac acctgagctc aggaattcca gaccagagtg agaaacaaag      6780
     tgaggcccca tctctagaaa aaaatacaga agaaaacaga aaataaaata aaaaataccc      6840
     agttgtggtg gtgttggccc atagtcccag ctactcagga ggctgaggca ggaagattgc      6900
     ttgagct                                                                6907
//


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