Dbfetch
ID AC007042; SV 3; linear; genomic DNA; STD; HUM; 6907 BP. XX AC AC007042; XX DT 15-MAR-1999 (Rel. 59, Created) DT 26-FEB-2004 (Rel. 78, Last updated, Version 15) XX DE Homo sapiens BAC clone RP11-399H17 from Y, complete sequence. XX KW HTG. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6907 RX PUBMED; 9847074. RA Wilson R.; RT "Toward a complete human genome sequence"; RL Genome Res. 8(11):1097-1108(1998). XX RN [2] RP 1-6907 RA Nelson D., Wohldmann P., Harris A.; RT "The sequence of Homo sapiens BAC clone RP11-399H17"; RL Unpublished. XX RN [3] RP 1-6907 RA Waterston R.H.; RT ; RL Submitted (06-MAR-1999) to the INSDC. RL Genome Sequencing Center, Washington University School of Medicine, 4444 RL Forest Park Parkway, St. Louis, MO 63108, USA XX RN [4] RP 1-6907 RA Waterston R.H.; RT ; RL Submitted (15-MAR-2000) to the INSDC. RL Genome Sequencing Center, Washington University School of Medicine, 4444 RL Forest Park Parkway, St. Louis, MO 63108, USA XX RN [5] RP 1-6907 RA Waterston R.H.; RT ; RL Submitted (20-MAY-2000) to the INSDC. RL Genome Sequencing Center, Washington University School of Medicine, 4444 RL Forest Park Parkway, St. Louis, MO 63108, USA XX RN [6] RP 1-6907 RA Waterston R.H.; RT ; RL Submitted (22-MAY-2000) to the INSDC. RL Genome Sequencing Center, Washington University School of Medicine, 4444 RL Forest Park Parkway, St. Louis, MO 63108, USA XX RN [7] RP 1-6907 RA Waterston R.H.; RT ; RL Submitted (23-MAY-2000) to the INSDC. RL Genome Sequencing Center, Washington University School of Medicine, 4444 RL Forest Park Parkway, St. Louis, MO 63108, USA XX RN [8] RP 1-6907 RA Waterston R.H.; RT ; RL Submitted (12-JUN-2000) to the INSDC. RL Genome Sequencing Center, Washington University School of Medicine, 4444 RL Forest Park Parkway, St. Louis, MO 63108, USA XX RN [9] RP 1-6907 RA Waterston R.; RT ; RL Submitted (30-SEP-2000) to the INSDC. RL Department of Genetics, Washington University, 4444 Forest Park Avenue, St. RL Louis, Missouri 63108, USA XX RN [10] RP 1-6907 RA Waterston R.H.; RT ; RL Submitted (06-JUN-2001) to the INSDC. RL Genome Sequencing Center, Washington University School of Medicine, 4444 RL Forest Park Parkway, St. Louis, MO 63108, USA XX RN [11] RP 1-6907 RA Waterston R.H.; RT ; RL Submitted (03-JUL-2001) to the INSDC. RL Genome Sequencing Center, Washington University School of Medicine, 4444 RL Forest Park Parkway, St. Louis, MO 63108, USA XX RN [12] RP 1-6907 RA Waterston R.; RT ; RL Submitted (01-MAR-2002) to the INSDC. RL Department of Genetics, Washington University, 4444 Forest Park Avenue, St. RL Louis, Missouri 63108, USA XX DR MD5; bfa19e442c5483de19c6a7ca4a3c9c68. DR ENA-CON; GL000186. DR Ensembl-Scaffolds; AC007042.3:1-6907; homo_sapiens. XX CC On Jun 6, 2001 this sequence version replaced gi:7243920. CC -------------- Genome Center CC Center: Washington University Genome Sequencing Center CC Center code: WUGSC CC Web site: http://genome.wustl.edu/gsc CC Contact: sapiens@watson.wustl.edu CC -------------- Summary Statistics CC Center project name: H_NH0399H17 CC --------------. CC NOTICE: This sequence may not represent the entire insert of this CC clone. It may be shorter because we only sequence overlapping CC clone sections once, or longer because we provide a small overlap CC between neighboring data submissions. CC This sequence was finished as follows unless otherwise noted: CC all regions were double stranded, sequenced with an alternate CC chemistry, or covered by high quality data (i.e., phred quality >= CC 30); an attempt was made to resolve all sequencing problems, such CC as compressions and repeats; all regions were covered by sequence CC from more than one subclone; and the assembly was confirmed by CC restriction digest. CC MAPPING INFORMATION: CC The position of this clone was established as part of a CC collaboration between the Human Chromosome Y Mapping Project CC (Tomoko Kawaguchi, Helen Skaletsky, Laura G. Brown, Steve Rozen, CC and David C. Page at the Whitehead Institute for Biomedical CC Research, Cambridge MA) and the Washington University Genome CC Sequencing Center, St. Louis MO. CC SOURCE INFORMATION: CC The RPCI-11 human BAC library was made from the blood of one male CC donor, as described by Osoegawa,K., Woon,P.Y., Zhao,B., Frengen,E., CC Tateno,M., Catanese,J.J. and de Jong,P.J. (1998) An improved CC approach for construction of bacterial artificial chromosome CC libraries. Genomics 51:1-8. The clone may be obtained either from CC Research Genetics, Inc. (http://www.resgen.com) or Pieter de Jong CC and coworkers at http://www.chori.org CC VECTOR: pBACe3.6 CC NEIGHBORING SEQUENCE INFORMATION: CC The clone sequenced to the left is RP11-462A19, 200 bp CC overlap,clone sequenced to the right is RP11-568H21, 200 bp CC overlap. Actual start of this clone is at base position 51511 of CC RP11-462A19; actual end is at base position 68835 of RP11-537C24. XX FH Key Location/Qualifiers FH FT source 1..6907 FT /organism="Homo sapiens" FT /chromosome="Y" FT /map="Y" FT /mol_type="genomic DNA" FT /clone_lib="RPCI-11" FT /clone="RP11-399H17" FT /db_xref="taxon:9606" FT repeat_region 232..255 FT /rpt_family="AT_rich" FT repeat_region 1274..1551 FT /rpt_family="CR1" FT repeat_region 1617..1655 FT /rpt_family="(CA)n" FT repeat_region 1660..2091 FT /rpt_family="MER2_type" FT repeat_region 2102..2140 FT /rpt_family="GA-rich" FT repeat_region 2138..2310 FT /rpt_family="(TAGA)n" FT repeat_region 2930..2957 FT /rpt_family="AT_rich" FT repeat_region 2946..3067 FT /rpt_family="Alu" FT repeat_region 3439..3929 FT /rpt_family="MER1_type" FT repeat_region 4207..4424 FT /rpt_family="ERV1" FT repeat_region 5307..6295 FT /rpt_family="L1" FT repeat_region 6279..6315 FT /rpt_family="AT_rich" FT repeat_region 6374..6518 FT /rpt_family="MIR" FT repeat_region 6679..6906 FT /rpt_family="Alu" XX SQ Sequence 6907 BP; 2269 A; 1203 C; 1262 G; 2173 T; 0 other; atctttcaaa aagtgtgatg ttgcaagaat ttccatgttt ttactaataa ataaatttct 60 ttctcatttc tatttctaca aacatgcaca tagaacatta aaatatgttt ttccaatgtg 120 ttttctattt gaaaataaca aattgataag tgtcttttca ggttctatga tgatgtttat 180 aattttttct ctatgaattc ttatctttaa aatgaaatca atatatttcc gttttataat 240 aaattttttt tatttctagt gtgaacccca tgtaataagc atgcattaaa aaatgtattg 300 ctatattata ctttcatatg ttccacttag acttagtcac attggtaagg tgagttgctt 360 tatagctttc ttttgaaaac attcttaaat attcgtgcct ggaattatat aaaaatcaat 420 aagtttttct ccttttcctg cattttagaa tgatttttaa aaacattgaa atgatctgtc 480 ttttgaggtt cgaatagaat ttcaccctta atccattggt ctttgggggt attagggatc 540 actccctgat aatttcttat ctttcttaga aataattata ctcagttttc aaaatctcct 600 tggaatcaga ttagtaattc atatttttat agataactat tttgtggaac acaatcccat 660 aatgcacccc tcccatctgt gtaaatttca ttgaatttct gcatccattt tgagtgagtg 720 gtagagttac tcaaaagttc tttcaatgat gaggttttca gttctgttct tggatctctt 780 tggtttgttt gtattcaggg aagagatcca ttagagatga ctgtgctcat tcataaacca 840 cccattcagt cttttctaaa atctcactat cttttcctct tcagtattca cagtccttga 900 ttcttctacc atagtgacta tgagacatgt gtaaataatc ttagaggaag attccataat 960 ggtgccagac atttgtccct ctgcactttc taaatatcag cattctccaa gcttccagat 1020 tggacacact tccttattta ttccaaatgc ttctctgcaa caatcttaat caaagcactt 1080 gagatttaca tagacttaca tactaccaca ttcatacatt tctatcctaa ggttgttctt 1140 gtttttgttc cttaaattta cttatacctc tcacttaaaa catgacaaaa catactttta 1200 catctctttc atgctatgtt tgtttttctg tagtcttatg ctatgataat tatacaactt 1260 gcttgggggc tcacattaag aaaattatat gctggttttg ttttatttct ttatgtcatg 1320 actagggaga aaaatcaaag aagtttataa gcacagtatg tctgggtgaa caaagctttg 1380 tgaattcagt agtatgtctg tggaatgcat gaaagctgag aaccatgtgg tagtatactt 1440 agaatgcctt agggcttaac atagatacac tccccagagg tgtggtttta tgaataaatc 1500 ttattgtcca ggcagatttc aagtttatca gggtgcagtg caagcctctg tgttgcatgt 1560 tttctcaaag attaagtttc aaggaaactg ccatttaaaa gtttgaatga agatagacac 1620 acatacacac acacatacac acacacacac acacatgatt taatccctga acaactctag 1680 ggttaggagt gccacctttc tgtgcagttg aaaatgtata tatacctttt actcttcaaa 1740 aacttaagta ctaatagtct actgttgaat gaacttctta ctgataacat caacagtcaa 1800 ttaacacata ttttatatgt tggacatatc atactgtatt cttaacaata aagtaagcta 1860 gagaaaagaa aatgttatta agaaaatgta aggaagataa tatatctact attcattaag 1920 tggaagttaa tcatttttaa ggtcttcatc ctggtcaact tcaccttcag taggctgaag 1980 agaagaaaga ggaggggttt gtcttgctgt ttcagaggtg gcaaaggagg aaggaaatcc 2040 tcatgaaagt ggatccatga agtttaaacc tatgttgttc aagggccaat tatgtatgta 2100 tagagagaga gagaaagaaa gagggagaga aagagggaga cagacagata tacagagata 2160 gatagatgat agatagatag atagatagat agatagatag atagatagat atagatagat 2220 gataggtaga taggatgggt gggtggatgg atgatgtatg tatgtatgta tggatggata 2280 gatatgattg attgatggat gtatagatag gtgaaagaaa gaaaggaaga gagagatagg 2340 caacctcaag tcttgaaatc attttaaaag tgaccaggaa gatcatatat cttctaggat 2400 taaagaagga atatgatttg taagtaatgt cttgcaacta aaaagtttag atcacaaatt 2460 agaaccttgc ctttgagcca aaactaatag gatagaattt aaatgtgata aacatggcat 2520 gcttgtgtaa tactaacatg caatatgttg aaggttaatc tggttgtcct tcaaattaaa 2580 acgggtcagg acttgacatc atgaatatga atatcacaga tgtcatgcta ggtgcagaaa 2640 aggtgacttt tgaacatttc aagtggtctt tgccctgggt atttcttcct cctttctgtc 2700 ttttttgcat tcacatcaat tttctaagtg ttccctgatt tctttttgaa tattaccaca 2760 tctctattgc atgtagtcca gggtgataat aatcccaatt ttttttgtcc cccagcctag 2820 ggtgagcaca tgcatatgac atcttgggga cataacccct tccacaaatt taaattttgt 2880 ttagaggagt ggaagccttg gagagtattg atcctctata ccatgattgt ttttattatt 2940 tactattttt atttttagag atgaggtctc actacgttac ccaggctgga ctcaaacttc 3000 tgagcacaag caattctcct gcctcccaaa atgctgggac tacaggtgtg agccaccaca 3060 tccagtctct ccaagacatt ctagcagctg aatcttgcct gactagactc ttccacatgg 3120 aggctttcat tgtagtttct gctttcttac tcttgagtga ccatccccaa gcccaatttt 3180 gaagcctcct actaatcctc agacagtcag aagtccttcc aaaaatgcac tcttgctttt 3240 cttactaaac caaagctctt tcctccaacc aaagaagctc cactcttatg aaaatcacag 3300 ttcatgtaga caacaatgtc cacaggttga agttctctct taatactgga gggagtttca 3360 tttatttgtc attctctatg aattttgagt gtttattcca ccttaggcat tactctggca 3420 gctctggata ctataaaaca acagtcccca acctttttgg caccagggac cagtattaat 3480 gaagacaatt tttacatgga ccaggggttt ggggaatggt ttcaggatga ttcaagcaca 3540 ttacatggat tgtgcactgt atttctatta tcattacatt gcaatatgta attaaataat 3600 tatacaagtc accataatgt agaatcagtg agaaccctga gcttgttttc ctgcaactag 3660 atatgcccat ctaggggtaa tgagagaatg acagatcatc aggcactaga ttctcataag 3720 gagcacagaa tctggatccc tctcatgcac agttcacaac agggttcaca ttcctatgag 3780 aatctaatgc tgctgctgat ctgacaagag gcagcgctct ggtagtaatg caagtgatgg 3840 agtatgactg tgaatacaga tgaagcttca ctcatttgcc tgctgctcac ttcctgctat 3900 atggcctggt tcctaagagg ccacagaccc actgggacct atggaataaa agatacagca 3960 gataaacaca gctgccttca aggaaaaagt gatcttacat gcggaaacaa gtcatcttat 4020 tcatttaaat tttgataact tcaaggaata aaaactaatt ttaaagaagt atcagctaaa 4080 tcccctctaa acttcaatat tctactacaa tgggcacatg aagctacaat tatccccagt 4140 gtctggggtt gtggggggaa tttgttccag gaaccctgtg gatacagaag tccatgtgtg 4200 ggggcaggcc aaggcccttg gatccctaaa agtttgctga aaatcatgga tgtgagacag 4260 attaatagga taaaaggcat aaaaatgtat ttgagtatat gtgggattct tcagagtgaa 4320 gacccaaaga tacagaggaa ttgtccattt ttatgccttg attcaacaaa gtatggacag 4380 ctatgtagaa ataggattgg acaaaaaggg cctgatctaa ttctggaaac attaaagaat 4440 ttttaaaaat gccaaatttg cagtgttccc taccttccat catctccatg ggaaaaatta 4500 cttaaataag aaaaaagatt atttttcagc aggatacttt tgttgccaat cacagagatt 4560 ccctgagaat aatctggttg tctctcaaat taaaaagtgt caggacttga cctcattgcc 4620 acaattaatc acagctgatt ttaatgtaat aaattagaaa taggaacact acagtgtttg 4680 ttaatgaaac aaagtgacaa tagaaagaac ataccagaag tagttcttaa aagtccttct 4740 atgctcttcc tagctgtagg gtcattttat agctgtgtac tttttagcac tttttgtgtg 4800 tgttttagaa acaattttat ttacttcaag taagttccat atattccaca gtcatttttt 4860 ctcagaattt tatactttga tagtcataat gccataattt ctttttacca aattaatttc 4920 aaacgaaata gtctttttcc ttatgacaag atttcaaaat tgatttttac ctgagtattt 4980 cagtaaatcc acttaaggtc cttaagtagt ttcaagtagg ttatgtggga tgttcaaaca 5040 gacaataatg ttacctacaa tcatggttta tttttactat ctcttgccaa taattttaat 5100 tattggccac attaccacat taggtagctc ttgtagaata aaattgatgc aaattgggta 5160 ttcttgatta aattatcgct actcacaaat acagaagaat aagtcaacta tattatttgt 5220 atgttatatt agatagtagt ttcacatata tatatgtaaa atataaagaa ttatcatatt 5280 cctgttttgc taagatacaa caggtattct gcacagcaaa agaaactgcc atcagagtga 5340 acaggcaacc tacaaaatgg gagaaaattt tcgcaaccta ttcatctgac aaagggctaa 5400 tatccagaat ctacaatgaa ctcaaacaaa tttacaagaa aaaaacaaaa accccatcaa 5460 aatgtgggcg aaggacatga acagacactt ctcaaaagaa gacatttatg cagccaaaaa 5520 acacatgaaa aaattctcac gatcactggc catcagagaa atgcaaatca aaaccacaat 5580 gagataacca tctcacacca gttagaatgg caatcattaa aaagtcagga aacaacaggt 5640 gctggagagg atgtggagaa ataggaacac ttttacactg ttggtgggac tgtaaactag 5700 ttcaaccatt gtggaagtca gtgtggcgat tcctcaggga tctagaacta gaaataccat 5760 ttgacccagc catcccatta ctgggtatat acccaaagga ctataaatca tgctgctata 5820 aagacacatg cacacatatg tttattgagg caccattcac aatagcaaag acttggaacc 5880 aacccaaatg tccaacaatg atagactgga ttaagaaaat gtggcacaga tacaccatgg 5940 aatactatgc agccataaaa aatgatgggt tcatgtcctt tgtagggaca tggaagaaat 6000 tggaaatcat cattctcagc aaactatggc aagaacaaaa aaccaaacac cgcatattct 6060 cactcatagg tgggaactga acaatgagaa cacatggaca caggaagggg aacatcccac 6120 tctggggact gttgtggggt gggggaggct ggagggatag ctttaggaga tatacctaat 6180 gctaaatgat gagttaatgg gtgctggaca ccagcatggc acatgtatac tatgtaacta 6240 acctgcacat tgtgtacatg taccctaaaa cttaaagcat aataataata ataaagcatt 6300 ttaatttatt tttatgtttt actaatatac agagttattt aggatataga tctgctgtgt 6360 gtagaacatg accaacatct gtttgaactc agcttcaaca tctgtaaaaa tcatatgtta 6420 tctactgtat aggtctgcaa tgagaatgga atgaaataac aagaaaagca cttttccagt 6480 gtctcataaa tattaagggg taaataaatg acaattatac tactaagggg tggtatactt 6540 aatcaatttt gaacattatt acttcattcc ctgacttgta ttgagttagg tttatatact 6600 aaatggagat aatttgctca tgtgcttcac tatattaatg tattatcaaa tgctttacaa 6660 acttttaaag ttagaggagg ttgggcaagg tggtgcatgc ctgtaatccc agtgtttcag 6720 gaacacgagg cagaaggaac acctgagctc aggaattcca gaccagagtg agaaacaaag 6780 tgaggcccca tctctagaaa aaaatacaga agaaaacaga aaataaaata aaaaataccc 6840 agttgtggtg gtgttggccc atagtcccag ctactcagga ggctgaggca ggaagattgc 6900 ttgagct 6907 //