spacer

EBI Dbfetch

ID   AC006982; SV 3; linear; genomic DNA; STD; HUM; 2147 BP.
XX
AC   AC006982;
XX
DT   12-MAR-1999 (Rel. 59, Created)
DT   26-FEB-2004 (Rel. 78, Last updated, Version 11)
XX
DE   Homo sapiens BAC clone RP11-26D12 from Y, complete sequence.
XX
KW   HTG.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-2147
RX   PUBMED; 9847074.
RA   Wilson R.;
RT   "Toward a complete human genome sequence";
RL   Genome Res. 8(11):1097-1108(1998).
XX
RN   [2]
RP   1-2147
RA   Leonard S., Bauer C., Gregory S.;
RT   "The sequence of Homo sapiens BAC clone RP11-26D12";
RL   Unpublished.
XX
RN   [3]
RP   1-2147
RA   Waterston R.H.;
RT   ;
RL   Submitted (05-MAR-1999) to the INSDC.
RL   Genome Sequencing Center, Washington University School of Medicine, 4444
RL   Forest Park Parkway, St. Louis, MO 63108, USA
XX
RN   [4]
RP   1-2147
RA   Waterston R.;
RT   ;
RL   Submitted (08-NOV-2000) to the INSDC.
RL   Department of Genetics, Washington University, 4444 Forest Park Avenue, St.
RL   Louis, Missouri 63108, USA
XX
RN   [5]
RP   1-2147
RA   Waterston R.;
RT   ;
RL   Submitted (09-MAY-2001) to the INSDC.
RL   Department of Genetics, Washington University, 4444 Forest Park Avenue, St.
RL   Louis, Missouri 63108, USA
XX
DR   MD5; eaffce5a1f57c7cfa0c64df6702793bb.
DR   ENA-CON; GL000187.
DR   Ensembl-Gn; ENSG00000188120; homo_sapiens.
DR   Ensembl-Gn; ENSG00000205916; homo_sapiens.
DR   Ensembl-Gn; ENSG00000205944; homo_sapiens.
DR   Ensembl-Scaffolds; AC006982.3:1-2147; homo_sapiens.
DR   Ensembl-Tr; ENST00000382290; homo_sapiens.
DR   Ensembl-Tr; ENST00000382294; homo_sapiens.
DR   Ensembl-Tr; ENST00000382296; homo_sapiens.
DR   Ensembl-Tr; ENST00000382306; homo_sapiens.
DR   Ensembl-Tr; ENST00000382314; homo_sapiens.
DR   Ensembl-Tr; ENST00000382424; homo_sapiens.
DR   Ensembl-Tr; ENST00000382432; homo_sapiens.
DR   Ensembl-Tr; ENST00000382433; homo_sapiens.
DR   Ensembl-Tr; ENST00000382449; homo_sapiens.
DR   Ensembl-Tr; ENST00000400494; homo_sapiens.
DR   Ensembl-Tr; ENST00000405239; homo_sapiens.
DR   Ensembl-Tr; ENST00000415508; homo_sapiens.
DR   Ensembl-Tr; ENST00000426000; homo_sapiens.
DR   Ensembl-Tr; ENST00000440066; homo_sapiens.
DR   Ensembl-Tr; ENST00000449750; homo_sapiens.
DR   Ensembl-Tr; ENST00000449947; homo_sapiens.
DR   Ensembl-Tr; ENST00000540248; homo_sapiens.
DR   GOA; E7ENA5.
DR   GOA; E7EU38.
DR   GOA; E7EU39.
DR   GOA; F6S8J2.
DR   HGNC; HGNC:15964; DAZ2.
DR   HGNC; HGNC:15966; DAZ4.
DR   InterPro; IPR000504; RRM_dom.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait.
DR   UniProtKB/TrEMBL; E7ENA5; E7ENA5_HUMAN.
DR   UniProtKB/TrEMBL; E7EU38; E7EU38_HUMAN.
DR   UniProtKB/TrEMBL; E7EU39; E7EU39_HUMAN.
DR   UniProtKB/TrEMBL; F6S8J2; F6S8J2_HUMAN.
XX
CC   On Nov 8, 2000 this sequence version replaced gi:8569728.
CC   -------------- Genome Center
CC   Center: Washington University Genome Sequencing Center
CC   Center code: WUGSC
CC   Web site: http://genome.wustl.edu/gsc
CC   Contact: sapiens@watson.wustl.edu
CC   -------------- Summary Statistics
CC   Center project name: H_NH0026D12
CC   --------------.
CC   NOTICE:  This sequence may not represent the entire insert of this
CC   clone.  It may be shorter because we only sequence overlapping
CC   clone sections once, or longer because we provide a small overlap
CC   between neighboring data submissions.
CC   This sequence was finished as follows unless otherwise noted:
CC   all regions were double stranded, sequenced with an alternate
CC   chemistry, or covered by high quality data (i.e., phred quality >=
CC   30); an attempt was made to resolve all sequencing problems, such
CC   as compressions and repeats; all regions were covered by sequence
CC   from more than one subclone; and the assembly was confirmed by
CC   restriction digest.
CC   MAPPING INFORMATION:
CC   The position of this clone was established as part of a
CC   collaboration between the Human Chromosome Y Mapping Project
CC   (Tomoko Kawaguchi, Helen Skaletsky, Laura G. Brown, Steve Rozen,
CC   and David C. Page at the Whitehead Institute for Biomedical
CC   Research, Cambridge MA) and the Washington University Genome
CC   Sequencing Center, St. Louis MO.
CC   SOURCE INFORMATION:
CC   The RPCI-11 human BAC library was made from the blood of one male
CC   donor, as described by Osoegawa,K., Woon,P.Y., Zhao,B., Frengen,E.,
CC   Tateno,M., Catanese,J.J. and de Jong,P.J. (1998) An improved
CC   approach for construction of bacterial artificial chromosome
CC   libraries.  Genomics 51:1-8.  The clone may be obtained either from
CC   Research Genetics, Inc. (http://www.resgen.com) or Pieter de Jong
CC   and coworkers at the Roswell Park Cancer Institute
CC   (http://bacpac.med.buffalo.edu)
CC   VECTOR:  pBACe3.6
CC   NEIGHBORING SEQUENCE INFORMATION:
CC   The clone sequenced to the left is RP11-290O3, 200 bp overlap; the
CC   clone sequenced to the right is RP11-539D10, 200 bp overlap.
CC   Actual start of this clone is at base position 20743 of RP11-290O3;
CC   actual end is at base position 82188 of RP11-539D10.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2147
FT                   /organism="Homo sapiens"
FT                   /chromosome="Y"
FT                   /map="Y"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="RPCI-11"
FT                   /clone="RP11-26D12"
FT                   /db_xref="taxon:9606"
FT   misc_feature    1111..1258
FT                   /note="similar to  EST AL044707 (NID:g5432920)"
FT   misc_feature    1533..1640
FT                   /note="similar to  EST AL044707 (NID:g5432920)"
XX
SQ   Sequence 2147 BP; 671 A; 354 C; 374 G; 748 T; 0 other;
     atttttaaat taatgatgtg tcatagtttc ctgatgtgtc aattagttct taattaaaat        60
     ttttttcaaa ataagtcagc taaatagtga agccaaaaaa gaaacttgaa aacaaatcgg       120
     ctgaaaataa attcaaataa caggacacta acttacattg gcacaccact tgtaccactt       180
     tatacgtaca aaatgaattc acagatgtga tctcatgtca ttctcaaagc actttgccca       240
     cagatacata gctggcaagt aggtggctta taaccactta cctgtaaggg acataaacct       300
     agatctcctg actgaattaa tttttgtttc actatgctat attgtttctc caacgtatat       360
     attacttatg aatactactt cagaaaattt tacattaacc ttagagtctg ctgtggaaag       420
     aataaagaca gttctgatca gaatctagaa aattagtgag ttatatgtat gtgttttttt       480
     atctgaaaat aaagatggta tcatttatat ctatcagccc actgtgaaaa tcagaattat       540
     cagtcagact gattccgtgt tactcaggaa gaaaaatgtt atttcaaaag atgctttgaa       600
     caccctagcg ttagggaaga ggattgtaac aaattggttt aaaacgttga ggcttatttt       660
     ctttttggtg gggctttttt tttttttttt ttttttttaa gatttatctt tagtctactc       720
     agtaaagtga aaagttgttt atgaatatag aacaggatga ttttaataac tttaattttt       780
     acaaatctaa actctctagt tttgggtgtc ttttttaact acttcacgta gtactttcac       840
     aaatactaaa tgggtattct tccacagcat tatacaagac tcggtgatga gcggcactag       900
     gtttaagaaa gtactgtatc cttcggttaa aattccatgc tgatgtactc tgataagttt       960
     aaatcctgag cctgaactga gctgcactgg tgactgaatt acaatgaaag taatttatgt      1020
     aaaatatact taaaatacaa aaatggtatt tcacattatg tatgggtttt gcctgcatac      1080
     gtaattatga tgtctacttt ccaaattaca gtctgctgca aatcctgaga ctccaaactc      1140
     aaccatctcc agagaggcca gcacccagtc ttcatcagct gcagctagcc aaggctgggt      1200
     gttaccagaa ggcaaaatcg tgccaaacac tgtttttgtt ggtggaattg atgctagggt      1260
     attgtatttg tacctcattt ttaccttaac atacatcatg aacaatggga tgtgggccct      1320
     gttacaaact taaatttttt tttgtacttc ctggaggttt agaattgctt ttaggtttga      1380
     cccataggta ctaaaaatat ctttgacaaa gggctgctgg tcattcgggg ataaatgggg      1440
     gagaaatttc cacctcatgg tagtaaaatt gtagtaaagt tgaaattttt gaatgctgaa      1500
     tttttactct gacgttcagt tcttttccat agatggatga aactgagatt ggaagctgct      1560
     ttggtagata cggttcagtg aaagaagtga agataatcac gaatcgaact ggtgtgtcca      1620
     aagggtgagt aattttatca aaaatatgtg aactccagtc acctattcta taagtatcag      1680
     acaagacttc aaaactgata ttctgaccct tgtataaatg caatattctg cagtgttaat      1740
     ttctttcacg taggggataa aaggctatta ccagttcttc tatttgacca tttttctaat      1800
     gtttgtattt aaatgtctcc agtttctatt tcatacagat gagttaatca gttttctcaa      1860
     ataattgttt tcttcataca ctgcagagca tcttaaattt taaccacctt gtcttagaca      1920
     gtaagttaaa ctcaggttca cagatatgaa ttctttgcta atcaataaag ttgtcacact      1980
     gccctaatcc tagcacattt tgacatagtt ctgcttaaga aaaagtggta tttgtagagg      2040
     atctgtcatg tacatcttag caaatactta tcatggtata ttattcgtct tttgtcatga      2100
     tcacttctgt atatagaata gtagaccttc tgaaccacgt actgtat                    2147
//


spacer
spacer