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EBI Dbfetch

ID   ABBA01236158; SV 1; linear; genomic DNA; WGS; HUM; 5796 BP.
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AC   ABBA01236158;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276963005, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-5796
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-5796
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; d6af509d69835c9ac25a30086e5a4051.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; DS488122.
DR   ENA-CON; KI270591.
DR   ENA-CON; GJ212112.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01236158.1:1-5796; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..5796
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 5796 BP; 1832 A; 1363 C; 832 G; 1769 T; 0 other;
     agaagtttct cagaaatctc tgtctagttt ttatgtgaag atatttcctt ttccaccata        60
     ggcctaaaaa caatcgcaca catcacaaag aagtttctca ggattcttct acctagtttt       120
     tatttgaaga tatttccttt tccaccatag gtgtccaagc tctccaaatg tccatttgca       180
     gattctacaa aaagagagtt tcaaaactcc caatcaaaag aaatgtttaa atttttgagg       240
     tgaatgcaca catcagaaag aagtttctca gaaatctact gtctagtttt tatgtgaaga       300
     tatttccttt tccatcatag gcctcaaggc actccaaacg tccacttact gattcttcaa       360
     aaagagagtt tcaaaattgc tcaataaaaa gacaatttta actctgttag atgagtgcac       420
     acatcacaaa gtagtttctc agattgcttc tgccttgatt taatgtgaag atatttcttt       480
     ttattcaata aactgcaaag ctctccaaaa gtccactagc agctttgaca aaaagactgt       540
     ttccatactg ctcaagaaaa taaaggttca actttgtggg atgaacacac acatcacaaa       600
     gaagtttctc agaattcttc tgcctatttt ttatgtgaag atatttcctt ttccaccata       660
     ggcctccaag tactccaaat ggccacttgc agattctaca aaaagagagt ttcaaaactg       720
     ctcaatcaaa agaaaggttt aactctgtgg gatgaatgca cacatctcaa aaaagtttct       780
     cagattgctt ctgtctagat tttatgtgaa gatttttcct tttataccat aggctgcaaa       840
     gcgctccaaa tgtccaattg cagattctac aaaaagagtg tttccaaact gctcattcaa       900
     aggaaaggtt gaactttgtg agatgaatgg acacgacaca aacaagtttc tcagaattct       960
     tctgcttatt ttttatttta acatatttcc ttttccacca tgggcctcaa agccctccaa      1020
     atgtccactt acagattcta caaaaacagt gtctccatac ttctcaataa aaagaaagtt      1080
     tcaactccat gagaggaatg cacacatcac aaagtggttt ctcagaattc ttctgtcttg      1140
     tttttatgtg aagatatttc cttttcaacc atacaccaca aagtactcca aatgtctgct      1200
     tgctgcttct acaaaaagag agtttccaaa atgcacaatc aaaaaaaaaa ggtttaatta      1260
     tgtaagttga atgcacacat ctcaaagaag tttatcagat tgcttctgtc tagatttttt      1320
     gtgaagattt tcttttttac taccataggc tgcaaagcgc tccaaatgtc caatagcaga      1380
     ctctacaaaa agagtgtttc caaactgctc agtcaaagga aaggttctac tctgcgagat      1440
     gaatgcacac atcaccaaga agtttctcag aattcttctg cctagttttt atgttaagat      1500
     atttcctttt ccaccatggt cctcaaagcg ctccaaatgt aaacttgcag actctacaaa      1560
     aagagagctt tgaatctcct caatcaaagg aaagtttaaa ctctttgagg ttaatgcaca      1620
     catcacaaag gagtttctca gattgcttct gtctagattt tatgtgagga tcttaccttt      1680
     tcaggcatag gccgcaaagc gctccaaatg tccacttgca gaatctacta aaagattgtt      1740
     tccaaaatgc tgaatcaaaa gaaatgttca actcggtgag atgtacctac acataacagg      1800
     gaagtttctc agaattcttc tatatagttt ttatgtgaag atatttcgtt ttctaccata      1860
     gtcctcaaag cgcttcaaat ttccacttgc atattctaca gaaagagagc ctgaaaactc      1920
     ctcaatgaaa agaaatattt aacactgtga gatgaatgca cacatcacaa attagtttct      1980
     cagattgctt ctatctagat tttatgtgaa ggtatttcct tttctaaccc aggccaaaag      2040
     gtgaacaaaa tgtccactta aagattctac agaaagagtg tttccaaact tctctatcaa      2100
     aagaaaggtt caactctgtg agataaatgc acacatcaca aagaagtttc tcagaattct      2160
     tctgtttatt ttttaagtga agatatttcc ttttccatca taggcctcaa agtgctccaa      2220
     atgtccactt gcagatccta caaaaagaga gttttaaaac tgctcaatga aaagaaaggt      2280
     ttaacactgt gagatgaatg cacacatcac aaagaagttt ctcagattgc ttctgtctag      2340
     attttatgtt aagatatttc cttctgtacc ataggcctca aatcgctcca aatgtccaca      2400
     tgcagattct acaaaaagag tgtttccaaa ctgctcaatc aaaagaaagg tttcactcag      2460
     tgagatgaat gcacacatca caaagaagtt tatatgattg cttctgtcaa gagtttatgt      2520
     gaagatattt ccttttcctc cttagtcctc aaagtgctcc caatgtccaa ttgcaaattc      2580
     aacaaaaaga gagtttcaaa actctcactc aaaagaatgg tatcactcag tgagatgaat      2640
     gcacacatca cagagaagtt tctaagattg cttctgtcaa gattttatgt gaagatattt      2700
     ccttttctac tgtaggccgc aaagtgctcc aaatgtccac tgggagattt tacaaaagag      2760
     tgtctccaaa ctgatcaatc aaaagaaagt ctcaactctg tgagatgaac gcatgcttca      2820
     caaagaagtt actcagaagt cttctgtcta gtttttatgt gaagatattt ggttttccac      2880
     catgggccac aaagagctct taatctccac ttgcaggttc tacaaaagag agtttcaaaa      2940
     ctgctcaatc aaaaaaaagt tttaactctg tgacatgaat gcacacatca caaataaatt      3000
     tcttagatta tttctgtcta gattttaagt gaagatatat ccttttctac cataggcccc      3060
     aaggccctcc aaatgtccac ttgcagattc tacaaaaaga gtatttcaaa acttgtacat      3120
     caaaaggaag gttcaactcc tggagatgaa tgcacacaac acaaagaagt ttctctgaat      3180
     acttcaatct tgtttttatg tgaagatatt tccttttcca ccattggcct caaagtgctc      3240
     caaatgtcca cttgcagatc ctacaaaaag agcgttttaa aactgctcaa tcaaaataaa      3300
     ggtttaactc tgtgagataa atgcgcatat cacaaagaag tttctcagat tgcttctgtc      3360
     tagattttat gtgaagatag ttccttttct accatgggcc tcaaatcgct ccaaatgtcc      3420
     acttgcagat tctacagaaa gagtgtttcc atactgctca atcaaacaaa ggttcaactc      3480
     tgtcagatga atgcacacat aaaaaagaaa tttctcagaa tacttctgtc tagtttttat      3540
     gtgaagatat ttccttttcc accttaggcc tcaaagtgct cccaatgtcc aattgcagat      3600
     tcaacaaaaa gagagtttca aaactgctca atcaaaagaa aggtttcact cagtgagagg      3660
     aatgcacaca tcacagagaa gtttctaaga ttgcttctct caagatttta tgtgaaaata      3720
     tttccttttc tgctgtaggc tgcaaagcgc tcccaatgtc cactgggaga ttttacaaaa      3780
     gggtgtctct aaactgctca atcaaaagaa aggttcaact ctgtgagatg aacgcatgct      3840
     tcacaaagaa gttactcaga aatcttctgt ctacttttta tgtgaagata tttcgttttc      3900
     caccataggc ctcaaagggc tcttaatctc cacttgcaga ttctacaaag gagagtttca      3960
     aaactgctca atcaaaagaa aggtttaact ctgtgacatg aatgcgcaca tcacaaagaa      4020
     gtttctcaga ttgcttttgt ctagatttta aatgaagatg tatccttttc taccataggc      4080
     cccaatgcgt tccaaatgtc cacttgcaga ttctacaaaa agagtatttc aaaactggta      4140
     catcaaaagg aagtttcaac tctttgagat gaatgcacac atcacagagg agtttctcag      4200
     aatgcttctg tctagttttt atgtgaagat atttcctttt ccaccgtagg cctgaaaact      4260
     ctccaaatat acacttacag attctacaaa aacgtgtttc aaaactgctc aatgaaaaga      4320
     aaggttcaaa tctgtgagat gaatgcacac atcacaaaga agtttgtcag aatgtttctg      4380
     tatagttttt atatgaagat acttcctttt ccaccatagg cttcgaagca ctccaaattt      4440
     ccacacgtag attgtacagt gtttcaaagc tgttcaatca aatcaaaggt tcaaacttgt      4500
     gagatgaatg cacacatcac aaagaaattt gtcagaatgc ttctgtctag ttattgtgaa      4560
     catatttcct tttccatcat aggcctcaat gcatgccaaa tgtccacttg ctgatagtac      4620
     aaaaacggtg tttcaaaact gctgaatcaa aagaaaggtt caactctttg agatgaatgc      4680
     acatatcaca aagaagttcg tcagaatgct tctatctagt tttcatgtga agattttttt      4740
     taaaaatatg cctcaaatca ctccaaatgt ccacttgcaa aatctacaaa aagagtgttt      4800
     ccaaactgct caataaaaag attcaactct gtgagaagaa cgcacacatc acaaagaagt      4860
     ttctcagaat gttctgtcta ggttttatgt aaagatattt acttttccac cataggcctc      4920
     aaagtgctcc aatccactcc aatgcattcc attctgtccc attccattcc actccattcc      4980
     actacactac actccacccc actccattcc attccattcc actccactcc actccattcc      5040
     attccatcag attccagttc tctccattcc actccactcc aatccacttc actcgactcc      5100
     acttcactcc attgtattcc atcccattgc attcaactcc actccattcc actcctttct      5160
     tttaacagta tctcaccctg tcgacaagcc tggagtgaag tggcacaatc tcagctcaca      5220
     tgacatttca acattccatt ccactccatt ccattccatt tcactacact ctgctgcact      5280
     ccactccact ccattccaat caatcccact ccattccagt acactgcatt ccactccact      5340
     cacttccact ccctttcatg ccatcccatt gaattcaact ccactccact ccactacagt      5400
     acagtagact acactacact cccttccatt acattccata ccacaccatt ccattccatt      5460
     ccattccttt ctttcgacag gatctcactc tgtcacccag gctggagtgc agtggagcaa      5520
     tctcagctga catttcactt cagcattcca ttgcattcca ttccattcaa ttccattcca      5580
     ttccattcca taacattcca ctgcactcca ctccacttca ctccactcaa ctccattcca      5640
     ttccatccac tccattccac tataaacccc tccagtccac tccactccat cccaaaccat      5700
     cccattacat tccactccat tccactccaa tccactccag tccagtccag tccactccac      5760
     tccatttcac tccaatccat cccatcacat tccact                                5796
//


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