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EBI Dbfetch

ID   ABBA01229304; SV 1; linear; genomic DNA; WGS; HUM; 2805 BP.
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AC   ABBA01229304;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276953240, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2805
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2805
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; a0af3d778dfeb7963e8e6d84c0c54fba.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270371.
DR   ENA-CON; GJ212195.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01229304.1:1-2805; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2805
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2805 BP; 829 A; 481 C; 560 G; 935 T; 0 other;
     gaacctttct tttgattgag cagttttgaa acactctttt tgaagaatct gcaagtggat        60
     atttggagcc ttttgaggcc ctgttgtgga aaaggaaata tcttcacata aaagctacac       120
     agaggcattc tgagaaactt cttgtgatgt gtgcattcaa ctcacagagt taaacctatc       180
     ttttgattga gcagtgaaaa actctttttt tgtagattgt gcaagtgtat atttggagcc       240
     ctttgagtcc tattgtggaa gggaaatatc ttcacataaa aactactcag aaacattctg       300
     agaaacttct ttgtgatgtg tgcattcaac tcactgattt gtacctatct tttgattaag       360
     cagtttagaa tctctttttg tgtagaatct gcatttggta tttttacccc tttgcaccct       420
     ctggtgaaaa aagaaatatc ttcaaataaa aactacccag aagcattctc agaaacttct       480
     tggttgtgtg tgctttcaac tcacagagtt gaaactgtct tttgagagat cagtttttaa       540
     tctctctttt tgcagaatct gcaagtggat gtttggagag ctatgaggcc tattgtggaa       600
     atggaaatat ctctacatga aaaccacaga gaagcattct gagaagcttc tttgtgagct       660
     gtgcattcaa ctcaccgagt tgaatttagc ttctaaaaga gcacttttga atctctgttt       720
     ttgtagtatc tgcaattgga tatttggaac cctttgcacc ctgtagtgga aaaggaaata       780
     tcttcaaata aaaactacac agaagcattc tcagaaactt cttcgtgatg tctgcattca       840
     acacacactg ttgaacctat cttttgattg agcagttttg aatctctctt gtggaaactg       900
     caagtggata tttggagtga tgtgaggcct actgtggaaa accaaatacg ttcacataaa       960
     acctacaaag aatcattctg tgaaacttcg ttgtgatgtg tgcatttaac tcatagagtt      1020
     gaacctatgt ttcgtttaag cagtttggaa tctctctttt tgcagaatct gcaaatggat      1080
     gttgggagag ctttgaggcc tagagtggaa aagtaaatat cttcacatga aaactacaga      1140
     gaagcattct gagaaacgtc ttcatgaggt gtgcattcaa ctcacagatc tgaagttatc      1200
     ttctcattga gcagttttga aactcatcat ttttagaatc tgcaagttga tatttggagc      1260
     cctttgcgcc cattggtgga aaaggaaata tcttcaaata aaaactacat agaaacattc      1320
     tgagaagctt cttggtgatg tgtgccttca tctcacaggg ttgaacctat cttatgattg      1380
     agcagttttg aaacactctt tttgcagaat ctgcaagtgg atatttggag ccctttgccg      1440
     cctttggtgt aaaaggaaat atcttcaaat aaaaactact gagaagcatt ctgagaaact      1500
     tctttgtgat gtgtgcattc acctcacaga gttgaaccta tcttttgatt gagcagttta      1560
     gaatctcttt ttctagaatc tgcaagtgga tatttgtagc gctgtgaggc ctactgggta      1620
     aaatcaaatg tgttcacaga aaaactacac agcgttctca gaaacgtctt tgtgatgtgt      1680
     ggattcaact cacagagttg aacctatctt ttgatagagc agatttgaat ctctcttttt      1740
     gcagaatctg caattggatg tttggagagc ttttatgcct cttgtggaaa aggaaatatc      1800
     ttcacataaa aactacacag aagcactttg agaaacttct ttgagaggtg tgcattcaat      1860
     tcatagagtt gaacttatct tgtcagttag cagtattcca tctctctttg tgtagattct      1920
     gtaagtggat atttggagcc ctttgcaccc tgtggtggaa aagaaattat cttcaaataa      1980
     aaactacaca gaagcattga gagaaactcc tttgtgatgt atgcattcaa ctcacagagt      2040
     tgaacatata ttttcaatga gcagttttga atctctcttt ttgtagaatc tgcatctggt      2100
     tatttggagc cctttgaggc ctactgtgga aaagcaaata ttttcaaata aaaactacac      2160
     agaagcattc agagaaactt ctttgtgatg tatgcataga acttacagag ttgaacctat      2220
     cttttgattg agcagttttg aatctctctt tttgcagaat ctgcaggtgg atatttggag      2280
     ctctttgatg gatactgtgg aaaagcaaat atcttcaaat aaaaactaca cagtagcatt      2340
     gtgtgaaact tcttggggat gtgtgcgttc atctcacaga gttgaaacta tattttgatt      2400
     aggcagtttt gaatctgtct ctttgcagaa tctgcaagtg catattagga gccctttgcg      2460
     gtctatggtg gaaaaggaaa tatcttcaaa taaaaactac acagaagaat tatcagaaac      2520
     ttcttcatga tgtgtgcatt caactcacag agttgaacct atgctttgat tcagcagttt      2580
     tgaatctctc tttttggaga atctgcaagt gggcatttag agctctttga ggcctactgt      2640
     ggaaaagcaa atattttcac ataaaaacta caaagaagca ttctgaggaa cttctttttg      2700
     atgtgtgcat tcaactcaca gagttgaatc tatactttga ttgagcagtt tagaatctct      2760
     ctttttagag atctccaagt ggacatttgg agcactttga tgcct                      2805
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