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EBI Dbfetch

ID   ABBA01216059; SV 1; linear; genomic DNA; WGS; HUM; 1930 BP.
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AC   ABBA01216059;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276933863, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1930
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1930
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 2a9297cfd3b3807195ab9ad07e775d99.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211927.
DR   ENA-CON; KI270381.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01216059.1:1-1930; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1930
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1930 BP; 617 A; 393 C; 337 G; 583 T; 0 other;
     caaatgtcca ctcccaggta gtgcacagag tgtttcaaac ctgctctatg aaaggaagtg        60
     ttcaactcta tgagttgaag gcaaacatca cagagaagtt tctgagaatg cttctgtctt       120
     gattttatat gaggatattc ccgtttccaa cgaaaccatc aaagctatcc aaatatccac       180
     ctgcagatcc tacaaaaaga gtgtttccaa aatgctgtat caaaacaaag gttcaactct       240
     gttagttgag aacacacatc gcaaataagt ttctgagaat gcttctgtct agtttttatt       300
     tgaagatatt tcctttttca ccacaggcct gaaagcgctt gaaacgtccg catgcagatg       360
     ctacagaaag agtgtttcaa agctgctcta tgaaagggaa tgttcagttc tgtgacttga       420
     atgcaaatat cacaaagaag ttcctgagaa tgcttctccc tagattttat atgtaatccc       480
     gtttccaacg aaaccctcaa agctatccaa atatccactt tcagattcca caaaaagagt       540
     gtttcaaaac tgctctgtaa aaagaaaggt tcatctctgt tagttgaata cacacatcac       600
     aaacaagttt ctgagaatgc ttctgtctag tttttatggg aagatatttc ctttttcaac       660
     ataggcctca aagcgctccc aatgtccact tccacgtagt gcacagagtg tttcaaacct       720
     gctctataaa agggaacatt ctactctgtg acttgaatga agacatcaca aagcagtttc       780
     tgagaatgct tccgtctaga ttttatatga agatattccc gtttccaagg atatcttcct       840
     agctatctaa atatcaactt gcagattcta ctaaaggaat gtttccaaaa tgctgtatcc       900
     acacaaaggt tcaactctgt taatggagga cacacagcaa gaagaagttt ctgagaatgc       960
     ttctgtctag attttatatg aagatatccc gtttccaaag aaatcctcaa aggtatccaa      1020
     atatctactt gcagattcta caaaaagagt gtttcaaaac ggctctgtaa aaggaaggtt      1080
     caactctgtt atttgagtac actcatcaca aggaagtttc tgaaaatgct tctgtctggt      1140
     ttttaggaga agatattacc tttttcacca tcggcctcaa agcggtgcta aagtccactt      1200
     ccgaatatca caaagagtgt ttcaaacgtg ctctatgaaa ggaagtgttc aactctatga      1260
     gttgaatgca aacatcacag agaagtttct gagaatgctt ctgttttgat tttatatgaa      1320
     gatattcccg tttctaaaga aaccttcaaa gctatccaag tattcacctg cagattctcc      1380
     caaaagagtg tttgcaaaat gttgtatcaa aacaaaggtt caactctgtt agttgaggac      1440
     acacatcgca aataagtttc tgagaatgct tctgtctagt ttttatttga agataattcc      1500
     tttctcacca taggcctgaa agcgcttgaa atgtccgctt gcagatacta cagaaagagt      1560
     gtttcaaaca tgctctatga aagggaatgt tcagttctgt gacttgaatg caaacatcac      1620
     aaagaaattc ctgagaatgc ttctctctag attttatatg taatcccgtt tccaacgaaa      1680
     tcgtcaaagc tatccacata tccactttca gattccacaa aaagagtgtt tcaaaactgc      1740
     tctgtaaaaa gaaaggttca tctctgttag ttgaatacac acatcacaaa caagtttctg      1800
     agaatgcttc tgtctagttt ttatgggaag atatttcctt tttcatcata ggcctcaaag      1860
     cgctccaaat gtccacttcc atgtagtgca gaaagagtgt ctcaaacctg gtatataaaa      1920
     gggaacattc                                                             1930
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