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EBI Dbfetch

ID   ABBA01204779; SV 1; linear; genomic DNA; WGS; HUM; 3041 BP.
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AC   ABBA01204779;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276918296, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-3041
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-3041
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; f4a5bfa203e9e81acb640b18fb11e78e.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270593.
DR   ENA-CON; DS490433.
DR   ENA-CON; GJ212114.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..3041
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 3041 BP; 911 A; 496 C; 623 G; 1011 T; 0 other;
     atctgcaagt ggacatttgg agcgccttgt ggactattgt agaataagga atatcttcac        60
     ataaaaacta gacaggagca ttctgacaaa cttcttagtg atatgtgcat tcatcttgca       120
     tcattgaacc tcccctttga tggagtagtt ctgaaactgt ctttttgtag aatctgcatg       180
     tggagatttt gagagctttt aggcctatgt tgcaaaagga aatatcttca tatagaaact       240
     agacagaagc attctgacaa ccttctttct gacatgtgca ttcatctcac agagttgaac       300
     tttccttttt atggaccagt tttgaaatac tctttttgta gaatgtgtaa gtggacattt       360
     agagcatctc gaggcctatg gtggaaaatg aaatatcttc acataaaact agacagaaga       420
     attctgagtg agaaacttct ttgtgatgtg tgcgttcatc tcacagagtt gaacctttct       480
     tttgattgag cagtttgcaa acacaatttt tgtagattct gcaagtggac atttggagtg       540
     ctttgcggcc tatggtagaa aaggaaatat cctcacataa aacctagaca gaagcaatgt       600
     gagaaacttc tttttgattt gtgcattcat ctcacagagt taaacatttc ttttgattga       660
     gcagttttga aacactcctt ttgtggaatc tgcaagtgga catttggagg gctttgaggc       720
     ctatggtaga aaaggaaata tcttcacata aaatctagac agaagcaatc tgagaaacat       780
     ctttgtgatg tatgcattca tctcacagag ttaaaccctt ctttgtttga gcagttttga       840
     aaatcttttt ttatagaatc tgcaagagga cattttgagg gctttgaggc ctttggtgaa       900
     aaaggaaata tcttcacata aaactagaca gaagaattct gagaaacttc tttgtgatgt       960
     gtgcattcat ctcacagagt tgaacctttc ttttgattga gcagtttgga aacacaattt      1020
     ttatagattc tgcaagtgga catttggagc actttgcggc ctatggtaga aaaggaaata      1080
     tcttcacata aaacctaaac agaagcaatg tgagaaactt ctttgtgatg tgtgtattca      1140
     tctcacagag gtaacccttt ctttcaatag agcagtttag aaatgctctt tttgtaggat      1200
     ctgcaagtgg acatttggag cgcatttagt cctgtggtgg aaaagaaaat atcttcacat      1260
     aagtactaga cagaagaatt ctgagaaact tatttgtgat gtgtgcattc atctcacaga      1320
     gctgaacctt tcttttgatt gagcagtttg gaaacactct ttttgtggaa tctgcaagtg      1380
     gtcatttgga gcgctttgcg gcctaagata gaaaagcaat aacttcacat aaaatctaga      1440
     cagaagcaat ctgagaaact tctttgtgat gtgtccattc ataccacaga gttaaaactt      1500
     tcttttgatt gaggagtttt gaaactccct ttttgtagaa tctgctcatg gacacttgga      1560
     gggctttgag gcctattgtg gaaaaggaaa tatcttcaca taaaaactag acagaagaat      1620
     tctgagaaac ttctttttga tatgtacgtt cttctcacag agttgaatct ttcttttgat      1680
     tgagcagttt tgaaactctc tttttgtaga atctgcaagt ggacatttgg agcgctttga      1740
     ggcctatggt ggaaaaggaa atatcttcac gtaaaaacta gatagaagca ttctgagaaa      1800
     ctgctttgtg atgcgtgcat tcatctccca gagttgaacg tttcttttga tggaccagtt      1860
     ttgaaatact ctttttgtat aatctgcaag tggacatttc gagcgctttg tctcctattg      1920
     tgaaaaagga aatatcttca cttaaaatct agacagaagc aatctgagaa acttcttttt      1980
     gatgtgtgcg ttcatctcac agagttaaaa ctttcttttg attgaacagt tttgaaaatc      2040
     tctttttgta gtatctgtaa gtggacattt ggagtgcttt gaggccaatg gtagaaaagg      2100
     aaatcacttc acataaaaac tagacagaag aattctgaga aacttatttg tgatgtgtcc      2160
     attcatctca cagagttgaa cctttctttt gtttgagcag tatggaaaca cccttttggt      2220
     agaatctgca ggttgacatt tgacgtcctt tgaggccttg gttgaaaagg aaatatcctc      2280
     acataaaatc cagacagaag caatctggga accttctttg tgatgtgtgc attcatctcc      2340
     cagagttaaa cctttcttct gattgagcag ttttgaaact gtctttttgt agaatcttca      2400
     agtgaacatt tggagtgcat ttagtcctgt ggtggaaaag aaaatatctt cacataaaaa      2460
     ctagacagaa gaattctggg aaacttcttt tataagcgtg cattcatctc acagagttga      2520
     agctttcttt tgattgagca gtttggaaac actctttttg tagtatctgc aagtggacat      2580
     ttggagtgct ttgcggcctg cgatagaaaa ggaaatatct tcacataaaa tctggagaga      2640
     agcaatctga aaaacttctt tgtgatgtgt gccttcatct caaagaatta aacctttctt      2700
     ttgattgagt agttttgaaa cacacttttt gtggagtctg ctaatggaca tttggaaggc      2760
     tttgaggcct atggtggaaa aggaaatatc ttcacataaa aagtagacag aagaattctg      2820
     agaaacttct ttgttacatg tgcgttcatt tcacagagtt gtacctttct tttgattgag      2880
     cagtttggaa acactctatt tgtagaatct gcaagtggac atttggagcg ctttatggta      2940
     gaaaaggtaa tatctttaca taaaatctag acaaaagcaa actgagaaac tactttctga      3000
     tgtgtgcatt catctcacag tgttaaacct ttcttttgat t                          3041
//


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