spacer

EBI Dbfetch

ID   ABBA01200344; SV 1; linear; genomic DNA; WGS; HUM; 2168 BP.
XX
AC   ABBA01200344;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276911962, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-2168
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-2168
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 04549369e1197c626669a10164613635.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ212050.
DR   ENA-CON; KI270530.
DR   BioSample; SAMN02981236.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2168
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 2168 BP; 623 A; 393 C; 447 G; 705 T; 0 other;
     taacttcctt gtgttgtgtg tattcaactc acagagttga acgatccttt acacagagca        60
     gatttgaaac actctttttc tggaatttgc aagtggagat ttcagccgct ttgaggtcaa       120
     tggtagaaaa ggaaatatct tcgtataaaa actagacaga atgattctca gaaactcctt       180
     tgtgatgtgt gcgttcaact cacagagttt aacctttctt ttcatagagc agttaggaaa       240
     cactctgttt gtgaagtctg ccagtggata ttcggacctt tttgaggcct tcgttggaaa       300
     tgggatttct tcatattatg ctagacagaa gatttctcag taactacttt gtgttgtctg       360
     tatgcaactc acagagttca accttccttt agacagagca gatttgaaac actctttttg       420
     tggaatttgc aagtggagat ttcaagcgct tcgatgccaa tggtagaaaa ggaaatatct       480
     tcgtataaaa acaagacaaa atcattccca gaaactgcgt agtgatgtat gtgtttaact       540
     cacagagatt aacctttctt ttcatacagc attctggaaa ctctctgttt ggaaagtcta       600
     caagtggata tttggagctc ttagatgcct tctttggaaa cggaatttct taatataatt       660
     ctagagggaa gaattcttag taacttcttt gtgttatgtg tattcaactg acacagttga       720
     accttccttt agacagagca gattcgaaac actctttatc tggaatttcc aagaggagac       780
     ttcaagcgct ttcaggccaa aggcagaaaa ggcattatct tcgtataaaa acttgacata       840
     atcattctca gaaactgctc tgtgatgtgt gcgttcaact cacagagttt aacttttctt       900
     ttcattcagc agtttggaag cactctgttt gtatagtctg caagtggata tattgaccac       960
     tttgaggcct tcgttggaaa cggttttttt tcatgtaagg ctagacagaa gaattcccag      1020
     taacttcttt gtgttgtgtg cattcaactc acagagttga acgttccttt agacagagca      1080
     gatttgaaac actctttttg tgcaatttgc aagtggagat ttcaagcgct ttgaggtcaa      1140
     tggcagaaaa ggaaataact tcgtttcaaa actagacagt atcattccca caaactgcat      1200
     tgtgatgtgt gcgttcaact cacagagttt aacctttctt ttcatagagc cgtttgtaag      1260
     cgctctgttt gtcaagtctg caagtggata ttctgacctc tttgaggact tcgttggaaa      1320
     caggatttcg tcctataata ctagacagaa gaattctcag taacttcctt gtgttgtgtg      1380
     tattcaactc acagagttga accatctttc acacagagca gatctgaaac actctttttg      1440
     tggaatttgc aagtggagat ttcagccacc ttgaggtcaa tggtagaaaa ggaaatatct      1500
     tcgtataaaa actagacaga atgattctca gaaactcctt tgtgatgtgt gtgttcaact      1560
     cactgagttc aacctttctt ttcatacaac attctggaaa cactctgttt gtaaagtctg      1620
     caagtggata tctggacctc ttagatgcgt tcgttggaaa cgggatttct ccatataatg      1680
     ctagagggaa gaattcttag taacttcttt gtgttgtgtg tattcaactg acagagttga      1740
     accttccttt agacagagca gatttgaaac aatctttttg tggaatttgc aagtggagat      1800
     ttcaagcgct ttgaggccaa aggcagaaaa ggaaatattt tcctataaaa actagacaga      1860
     atcattctca aaactgctct gtgatgtgtg cgttcaactc acagagttta acttttcatt      1920
     cagcagtttg gaaacactct gtttgtaaag tctgcaagtg gatattttga cctctttgag      1980
     gccttcgttg gaaacgggtt tttttcatgt caggctagac agaagaaatc tcagtaactt      2040
     ccttgtgttg tgggtattca actgacagag ttgaaccttc ctttagacag agcagattcg      2100
     aaacatcttt ttgtgcaatt tgcaagtgga gacatcaagc gccttgaggt caaaggcaga      2160
     aaaggaaa                                                               2168
//


spacer
spacer