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EBI Dbfetch

ID   ABBA01188196; SV 1; linear; genomic DNA; WGS; HUM; 2378 BP.
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AC   ABBA01188196;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276894358, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2378
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2378
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; d678250c97e9b94aa390fa46e70a6d83.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270375.
DR   ENA-CON; GJ212199.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2378
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2378 BP; 810 A; 464 C; 393 G; 711 T; 0 other;
     caaacagtgt ttcaaaagtg ctcaataaaa aaaaggttca actctgtgag atgaatgcac        60
     acatcacaaa gtagtttctc agcatgtttc tgtatagttt ttatgtgaag atattacctt       120
     ttccacaata gacctcaagg cactccaaat atccacctgc agattctaca aaaaaagtgt       180
     ttcaaaacta ctcaatcata agataggttc aacgctgtga gttgaatgca catatcccaa       240
     agaagtttct cagaatgctt ctgtctagtt tttatgtgaa gacatttcct tttcagctat       300
     aggcctcaaa gtgctccaaa tatccacttg cagaatctac agcaagagag attcaaactg       360
     ctcaatcaaa gcataggttc aattctgtga gttgaatgca cacatcatga agaaatttct       420
     gagaatgctt ctgtgtaggt tttatttgaa gatattccct tttccaccac agggagcaaa       480
     gagctccaaa tatccacttg cagattctac aaaaagagag atactaaact gctcaatcaa       540
     aagataggtt caaccctgaa agttgaatat acaaatcata aagaagtttc tcagaatgct       600
     tctgtgtagt ttttatgtaa agataattcc ttctccacaa taggcctcaa aggactccaa       660
     atatccactt gaagattcaa caaaaagtat ttcaaaactg ttcaatcaaa agaaatgttc       720
     aattccgtga gttgaataca caccacacaa aattttttca gaattcttct gtgtagtttt       780
     tatgtgaaga tatttccttt tccacaatag gtgtaaaagc tctcctaaca tccacttgca       840
     gattctgcaa aaagagagat tccaaactgc tcaatcagaa gataggttca actctgtgag       900
     ttgaatgcac acatcaaaaa gaagtttctc agaatgcttc tgtgtagttt ttatgtgaac       960
     atattttgca cagtaggcct cacagcactt taaatatcca cttgcagatt ctacaaaaag      1020
     agagattcaa aactgtacaa taaaaagata ggttcaactc tgtgagttga ctgcacacat      1080
     aacaaagaag tttctcagaa tgcttctgag tagtttttaa ttgaaggtat tttcttttcc      1140
     acaatagacc tcaaatggct ccaattatcc acttgcagat tgtacaaaaa aagtgtttca      1200
     aaactgttca atcaaaagaa agattcaact ctgtgaattg aatgcacaca tgacaaagaa      1260
     gtttctcaga atgtttctgt gtagttttta tgtgaagata tttccttttc cacaaaaggc      1320
     ctcaaaaggc tccaaatatc cacttgcaga ttgtacgaaa agtgtttcaa aactgctcat      1380
     caaaagaaag gttcaactct gtgagatgaa tgcacacatc acaacgaagt ttctcagaat      1440
     gcttctgtgt agtatttatc tgaagttatt ggcttttcca cggtaggcct caaagtgctc      1500
     caaatatcca catgtagatt ctagaaaaag agtgtttcga aactgctcaa ccgtaagata      1560
     ggttcaaccc tgtgagatga atgcatacat cacaaagaag tttctcagaa tgtttctgtg      1620
     tagtttttat ttgaaaatat ttccttttcg accacaagcc acaaagggct ccaaatatcc      1680
     acttgcacat tctgcaaaaa gagagattga aaactgctca atcaaaagat aggttcacct      1740
     ctgtgagttg aatgcacata tctcaaagaa gtttctcaga atgcttccgt gtagttttta      1800
     tttgaagata tttccatttc caccataggg tgcaatgagc tccaaataac cactagcaga      1860
     ttctacaaaa agagagattc aaaactgctc aatcaaaaga taggttcaac tctgtgaggt      1920
     gaatgcacac atcatgaaga agtttctgag aatgcttctg tgtagttttt atttgaagat      1980
     atttcctttt ccactacagg gcacaaacgg ctccaaatac ctacttgcag attctacaaa      2040
     cagagagatt ctaaactgct caatcaaaag ataggttcaa ctctgtgagt tgaatgcaca      2100
     catcacaaag aagtttctca gcatgcttct gagtagtttt tatgtgaaga tatttccttt      2160
     tccacaatag gcctcaaagg gctccaatta tccacttgca gattgtacaa aaagagtgtt      2220
     tcaaaactgt tcaatcaaaa gaaagattca actctgtgaa ttgaatgcac acatcaaaaa      2280
     gaagtttctc agaatgcttc tgtgtagttt ttatatgaag atatttcctt ttccacaata      2340
     ggcctcaagg cacgccaaat atccacctgc agattcta                              2378
//


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