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EBI Dbfetch

ID   ABBA01185959; SV 1; linear; genomic DNA; WGS; HUM; 1040 BP.
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AC   ABBA01185959;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276891187, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1040
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1040
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; f023f927ae84c5cc48dc4dce11ba90f2.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270329.
DR   ENA-CON; GJ211868.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1040
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1040 BP; 351 A; 216 C; 174 G; 299 T; 0 other;
     tggtctatca aagaaaggtt aaactcagtg agttgaaccc acacatcaca aagtagcttc        60
     tgagaatcat tgtgtctagt tctcctacga agatattgcc ttttctacca taggcctcaa       120
     acggcgctaa atatccacct ggaaattcta ccaaaactga ggttcaaaag tgctctattg       180
     aaaggaagct tcacctctgt gagttgaagg tacacatcac aaagaagttt ctgagaattc       240
     ttctgtctag ttgtaaatga agaaatcacg tttcaaacga aggccacaaa gaggtccaaa       300
     tatccacctg cagattctgc aaaaagagtg tttcaaaact gctccatcaa gaggaatgtt       360
     caactctgtg cgttgaatgc aaatatcaca agtaagtttc tgacaatact tctgtgtagt       420
     ttttatgtga agatatttcc tttcctactg taggcctcaa aacgctctaa atatacactt       480
     gcaaattcca caaaaagagt gtttccaaac tgctctatca aaggaagttt aaactgtgtc       540
     cgcttaatgc aagcatcaca aaacagcttc ggagaatgaa tctgcctagt ttttctgtga       600
     agatattcct ttttctgcca tagacctcaa accactgtaa aaatccactt ggaaattcta       660
     caaaaagagt atttcaaaac tcttctatcg aaaggaagtt tcaactccat gagttaaacg       720
     cacatatcac aaataatttt ctgaggattc ttctttcaaa ttttatatga agaaatcccg       780
     tttccaaaga tggcctcaga aaagtcccaa tatacacttg cagattctac aaaaagagtt       840
     tttcaaaact gctctatcaa aagaaaggtt aaactctgtg agttgaaggc acacatcaca       900
     cagtagtttc tgagaatcat tctgtctagt ttttctagga agatatcgcc ttttccacca       960
     taggcctcaa acggcgctaa atatccactt ggaaattcta caaaaagaga gttacaagac      1020
     tgctctattg aaaggaagct                                                  1040
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