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EBI Dbfetch

ID   ABBA01178423; SV 1; linear; genomic DNA; WGS; HUM; 4055 BP.
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AC   ABBA01178423;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276880593, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-4055
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-4055
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 0a603090f06108ed7aff75df0767b822.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270468.
DR   ENA-CON; GJ212027.
DR   ENA-CON; GJ211990.
DR   ENA-CON; GJ212153.
DR   ENA-CON; DS489000.
DR   ENA-CON; GJ212190.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..4055
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 4055 BP; 1257 A; 674 C; 807 G; 1317 T; 0 other;
     ttctttggaa cgggattatc ttcacaaaaa actagacaga agcattctca gaaacttttt        60
     tgtgatgtgt gcattcaact cacagagttg aaattttctt ttgatagagg agattggaaa       120
     caatcttttt gtagaatttg gaagtggata tttggagaga ttggaggcct tcgctggaaa       180
     cgggtatatc ttcacataaa aaccacacag aagcattgta agaaacttct ttgtgatgct       240
     tccattcaac tcacagaatt gaacattcct tttcatagag cagttttgaa acactttttg       300
     tagaatgtgt aagtggaaac ttggagggct ttgaggtcta tgataaaaaa ggaaatatct       360
     tcccataaaa aatagacata aaaattctca gaaacttctt tgtgaggtgt gtactcaact       420
     cacagagttg aacttttctt ttgatagagc agttttgaaa cacgcttttt gtagaatctg       480
     caagaggata tttggatagc tttgaggatt tcgtaggaaa cgggaatgcc ttcacataaa       540
     aactagacag aagcattctc agaaacttct ttgtgatgtt tgcattcaac tcacagattt       600
     gaaaattccc ttacatagag cagttttgaa acacactttt tgtagtatct ggaagtggac       660
     atttggagcg atttgaggcc tatggtgaaa aaggaaatat cttcacataa aaactagtca       720
     gaagaattat cagagacttc tttgtgatgt gtgtactcaa ttcacagagt tgaactttat       780
     tttgatagac caattttgaa acaatctttt tgtagtatct gcaagtggat atttggatag       840
     ctttgaggat ttccgtggaa acgggaatat cctcacataa aaactagaaa gaagcattct       900
     cagaaacttc tttttgatgt ttgcattcaa ctcatggagt tgaacattcc ttttcatagg       960
     gcagttttga aacacacttt ttgtagaatc tgcaagtgga cgtttggagc tctttgaggt      1020
     gtattgtgat aaaggaaata tcttcccata aaaattacac acaagaattc acagaaactt      1080
     ctttgtgata tgtgtactca actcacagag tttaacaatt tttttgatag aggagatttg      1140
     aaacactcgt tttctggaat ctgcaggtgg acatttggag cgctttgtgg ccttcgttcg      1200
     aaacgggaat atcttcacat aaaaactaga cagaagcgtt ctcagaaact tctttgtgat      1260
     gtttgcattc aactcacaga gttgaacatt ccctttcata gagtagtttt gtaacactct      1320
     ttttgcagta tttggaagtg gacatttgga gcgctttgag gcctatggtg aaaaaggaaa      1380
     tatcttcaca taaaaactag acagaagcat gctaagaaac tgctttgtga tgtgtgtact      1440
     caactcacag tgttaaacct ttcctttgaa agagcacttt tgaaacactt cttgtagaat      1500
     tcataagtgg atattaggac atctttgagg ctttcgttgg aaacggtaat atcttcacat      1560
     aaaaaccaga cagaagcatt ctcagaaact tctttgtgac gtttgcattc aactctcaga      1620
     gttgaacatt tcttttcata gaacagtttt gaaacactct ttttgcagaa tctgcaagtt      1680
     gtcatttgta gcactttgag gccttcgttc gaaacgggaa tatctccaca taaaaactag      1740
     acagaatcat tatcagaaac atctttatgt tcacagatgt tgaacctttc ttttgataca      1800
     gcagttttga aacactcttt ttgtagaatc tgcaagtgga tctttggata gcgctaaata      1860
     tttctttgga aacgggaata tcttcatata aaatctcgac agaagcactc tcagaaaccg      1920
     ctttgtgata tccgcattca agtcacagat ttgaacatca ttccctttca tagagcaggt      1980
     ttgaaacact ctttttgtag tatctggaag tggatatttg gagcgttttg atgccttcgg      2040
     tgaaaaagga aatatcttcc cataaaaact agacagaagc attctcagaa accggtttgt      2100
     gatatatgta ctcaactaac agagttgaaa ttttcttttg acagaccagt tttgaaacac      2160
     tctttttgtc gaatctggaa gtggatattt ggatagcctt gaggatttcg ttggaaacgg      2220
     gaatatcttc ctataaaacc tagacagaag cattcccaga aacttcttgt gatgttttca      2280
     ttcaattcgt agagataaac attccctttc atagagcagg tttgaaacac tcttttttgt      2340
     agtatctgga attggacatt tggagcgctt tgacgcctat ggtgaaaaag gaaatatctt      2400
     ccattaaaaa ctggacagaa gcattctcag aaacctgttt gggatgtgtg tactcaatta      2460
     acagagttga acctttcttt ttacagagca gttttgaaac actctttttg tagaatcggc      2520
     aaggggatgt tggatggctt tgtggatttc gttggaaacg ggaatatctt catataaaat      2580
     ctacatagaa gcattctcag aaaactcttt gtgatgtgtg tcccaactaa cagagttgaa      2640
     ccttgctgtt catagaggag ttttgaaaca ctctttttgt ggaatctaca agtggatact      2700
     tggattgctt tgaggatttc attggaaacg ggaattcata taaaaagtag acagcagcat      2760
     tctcagaaat ttctttttga tgtttgcttt caactcatag agttgaacat ttcctttcat      2820
     agagcaggtt tgaaacacac tttttgtagt atgtgcaagt ggatatttcg agcactttgt      2880
     cgcctattgt gaaaaaggaa atatcttcca ataaaaaaaa gacagaagca ttctcagaaa      2940
     cttgtttgtg atgtgttacc tcaactaaca gagttgaacc tttcttttga cagagcaggt      3000
     ttgaaacact ctttttgaag aatctgtaag tggaaatttg gatagcttag agggtttcgt      3060
     tggaaacggg aataccttca tacaaaatct agacagaagc attctcagaa acttcttcat      3120
     gatcttttca ttcaactcgt agagttgaac attcaatttc atagagccgg gttgaaacac      3180
     cctttttgta gtatcgggaa gtggacatta ggagtgcttt gacgcctatg gtgaaaatgg      3240
     aaatatcttc ccataaaaac tagacagaag gattctcaga aatatgtttg tgatgtgcgt      3300
     actcacctaa cagagtggaa cctttctttt tacagagcag cttagaaact ctatttccgt      3360
     ggaatctgca agttgatatt tggattgctt taacgatatt cctggaaacg ggaatatctt      3420
     catacaaaat ctagagagaa gcattctcag aaacttcttt ctgatgtctg tcctcaacta      3480
     acagagttga acctttcttt tgatgcagca gtttggaaac actctttttg tagaaactgt      3540
     aagtggatat ttggataggt ctaacgatat cgttggaaac gggaatatct tcatctaaag      3600
     tatacacaga agcactctca gaaactactt tgtgatatct gcattcaagt cacagagttg      3660
     aacattccct ttcttagagc aggtttgaaa actcattttg tagaatctgg aagtggacat      3720
     ttggagcgct ttgacgcctt tggtgaaaaa ggaaatgtct tcccataaaa actagacaga      3780
     agcattctaa caaacttctt tgtgatgtat gtactcaacc aacagagttg aacttttcta      3840
     tttatagatc agttttcaaa cactcctttt gtggaatgtg caagtggata attggatagc      3900
     tttgaggatt tcgttagaaa cggtacgaca taaaaaagaa gacagcagaa ttctaagaag      3960
     cttctttgtg atgtttgctt ttaagtcaca gaattgaaaa tttcctttca tagagcaggt      4020
     ttgaaacact ctttctgtac taactggaag gggac                                 4055
//


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