spacer

EBI Dbfetch

ID   ABBA01175335; SV 1; linear; genomic DNA; WGS; HUM; 1444 BP.
XX
AC   ABBA01175335;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276876367, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1444
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-1444
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 6adde7a9fe7bd6918f12d0f0924aa8ba.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ212146.
DR   ENA-CON; GJ212183.
DR   ENA-CON; GJ212087.
DR   ENA-CON; GJ211898.
DR   ENA-CON; GJ211983.
DR   ENA-CON; GJ211852.
DR   ENA-CON; KI270316.
DR   ENA-CON; GJ212020.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01175335.1:1-1444; homo_sapiens.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1444
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 1444 BP; 419 A; 252 C; 303 G; 470 T; 0 other;
     gttccttaga cagagcagat ttgaaacact ctttttgtgc aattggcaag tggtgatttc        60
     agccgctttg aggtcaatgg tataaaagga aatatcttcg tataaaaact agacagaatg       120
     attctcagaa acttcattgt gatgtgtgcg ttcaactcac agagtttaac ctttcttttc       180
     atagggcagt tagaaaacac tctgtttcta aactgtgaaa gtggatattg agacctcttt       240
     gaggccttcg ttggaaacgg gatttcttca tactgtgcta gacagaagaa ttctcagtaa       300
     cttccttgtg ttgtgtgtat tcaactcaca gagttgcacg atcctttaca cagagcagac       360
     ttgtaacact ctttttgtgg aatttgcaag tggagatttc agccgctttg aagtcaaagg       420
     tagaaaagga aatatcttcc tataaaaact agacagaatg attctcagaa actcctttgt       480
     gatgtgggtg ttcaactcac agagtttaac tttcttttca tagagtagtt agaaaacact       540
     ctggttgaaa tgactgcaag tggatattca gacctctttg aggccttcgt tggaaacggg       600
     ttttttccat agaaggctag acagaagaat tcccagtaac ttccttgtgt tgtgtgtatt       660
     caactcacag agttggactt tcatttacac agagcagatt tgaaacactc tttttgtggt       720
     atttgcaagt ggagatttca gccgctttga cgtcaaagat agaaaaggaa atatcttcgt       780
     ataaaaacta gacagaatga ttctcagaaa cttctttgtg atgtgtgcgt tcaactcaca       840
     gagtttaacc tttcttttca tagagcagtt aggaagcact ctgtttgtaa actctgcaag       900
     tggatattca gacgtctttg aggccttcgt tggaaacggg atttcttcat attaggcctg       960
     acagaagaat tctcagcaac ttccttgtgt tgtgtgtatt caactcacag agttgaacga      1020
     tcctttgagc agacttgaaa cactcttttt gtggaatttg caaatggaga tttcagccgc      1080
     tttgaggtca atggttgaaa aggaaataac ttcatacaaa aattagacag aatgattctc      1140
     agaaactcct ttgtgatgtg ggtgttcaac tcacagagtt taactttcta ttcatagagc      1200
     agttaggaaa cactctgtaa agtctgcaag tggatatttt cacctctttg aggccttctt      1260
     tggaaacggg ttttttttca tgtaaggcta gacagaagaa ttctcagtaa cttctttgtg      1320
     ttgtgtgtat tcaactgacc gcattgaact ttcattacac agagagattt gaacactctt      1380
     tttgtgaatt tgcaattcga gatttcaagc gctttgaggc caaaggcaga aaaggaaata      1440
     tctt                                                                   1444
//


spacer
spacer