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EBI Dbfetch

ID   ABBA01173735; SV 1; linear; genomic DNA; WGS; HUM; 2186 BP.
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AC   ABBA01173735;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276874148, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2186
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2186
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 3fd898b62ca859f50fb8b83e7706352b.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270518.
DR   ENA-CON; GJ212040.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01173735.1:1-2186; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2186
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2186 BP; 670 A; 350 C; 441 G; 725 T; 0 other;
     ttagcagttt tgagcaccct tttgataata cctgtgattg gacatttgga gtgctttgat        60
     gcctttggtg gaaaaggaaa tatcttcaca taagaactag acagacgcat tctgacaaac       120
     ttctttgtga tgtgtgcatt catctcagag agttgaacat ttattttgat tgaacagctt       180
     tgaaaacctc ttttgtggaa tctgcaagtg gacattggga gtgctttgag gcctatggta       240
     gaaaaggaaa tatcttcaca taaaaactag acagaagcat tctgacaaac atctttgtga       300
     tgtgtgcatt catctcacag agttgaacct aacttttgat tgagcagttt ggaaacactc       360
     tttttgtaga atctacaagt ggacatttag agtgctttga ggcctatggt ggataaagaa       420
     atatcatcac acaaaatata gacagaagca atcttggaaa tttatttgtg atgtgtgcat       480
     tcatctcaca gagttaaacc tttcttttga ttgagcagtt ttgaaacact ctttctgtag       540
     aatctgcaag tggatattcg gagtgctttg tggcctatgg tggaaaaggt aatatcttca       600
     cataaaaact acgcagaagc attctaagaa agttctttgt gatgtgtgca ttcaactcta       660
     agatttgaac ctatcttttg actgggcagt tttgaaacac tctttttgta gaatctgcaa       720
     ggggatattt agagcgattt gaggcctatt gtggaaaagg aaatatcttc acataaaaac       780
     tacagaaaag cattctacga aagttctttg tgatgtgtgc attcaattct cagagttgaa       840
     cctatctttt gatagagcag ttttgaaact ctctttttgt agaatttgca agtggatatt       900
     tggattcctt tgtggcctac ggtggaaaag gaaatatctt aacataaaaa ctacacagaa       960
     gcattctgag aaactacctt gtgatgtgtg aattcacatc acagtgttta acatttcttt      1020
     tgattgtgca gtttggaaac actcttttac tagtatctgc aagtggatat ttcgagccct      1080
     tgtaggccta ttgtggaaaa ggaaatatct tcacataaaa actacacaga agcattttga      1140
     gaaactcctg tgtgatgtgt gaattcatct tacagacttg aacctgtctt ttgattgagc      1200
     agttttgaaa cactcttttt atagactctg caagtggata tttgcatcac tttgaggcct      1260
     atggtggaaa aggaaatatc ttcccaaaaa acctacacag aagcattctc agaaacttct      1320
     ttgtgatgtg tgcattcatc ttacagagtt gaaactttct tttgattgag cagtttagaa      1380
     acactctttc atagaatctg caagtggata cttggagcgt tttgaggccc atggtggaaa      1440
     aggaaatatc ttcccataaa aactacaaag aagcattctg agaaacttct ttatgatatg      1500
     tgcattgaac gcaaagagtt gaacctatct tctgatacag caatttttaa aatcactttt      1560
     tatagaatct ggaagtggat atttggagcg ttttgtatcc tatggtggaa aaggaaatat      1620
     ctttccataa atgctacaca gaagtattcg gagtaactac tttgtgatgt gtgcattcaa      1680
     ctcatagagc tgaacctatc ttttgataga gcagttttga aaatctcttt ttgtagaatc      1740
     agcaagtgca tatttggaaa cctttgcagg ctatggtgga aaactaaata tcttcttata      1800
     aaaacttcac agaagcattc tgagaaactt ttttgtgatg tatgcattca tctcatggag      1860
     ttgaacctct ctttcaattg agaagtttgg aaacactctt tttgtggaat ctgcaaatgg      1920
     atatatggag ggcttgaggc ctattgtgga aaaggaaata tcttcccatg aaaactacac      1980
     agaggcattc tgagaaactt ccttgtgagg tgtacattca actcaccgat ttgaaccttt      2040
     ctttggattt agcagtttgg aaacactctt tttgtagaat ctgcaagtag ttattttgat      2100
     cgatttggag cctatgtggg aaaggaaata tcttcacata aaaactacac agaaatattc      2160
     tgagaaattt ctttgtgatg tgtgca                                           2186
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