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EBI Dbfetch

ID   ABBA01173715; SV 1; linear; genomic DNA; WGS; HUM; 1553 BP.
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AC   ABBA01173715;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276874123, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1553
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1553
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 1df30dae0f605811d927dcea58e729fc.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270580.
DR   ENA-CON; GJ212100.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01173715.1:1-1553; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1553
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1553 BP; 331 A; 264 C; 326 G; 632 T; 0 other;
     gtagtttgta gttctccgcg aagaggtcct tcacatccct tgtaagttgg attctaggta        60
     ttttattctc tttgaagaca ttgtgaatgg gagttcactc atgatttggc tatctgtttg       120
     tctattattg gtgtataaga atgcttgtga tttttgtacg ttgattttgt atcctgagac       180
     tttgctgaag ttgcttatca gcttcaggag attttgggct gagacaatgg ggttttctag       240
     atatacagtc atgttgtctg caaacaggga caatttgact tcctcttttc ataattgaat       300
     accctttatt tccttctcct gcctgattgc cctggccaga acttccaaca ctatgttgaa       360
     taggagtggt gagagagggc atccctgtct tgtgccagtt ttcaaaggga atgcttccag       420
     tttctgccca ttccgtatga tattggctgt gggtttggca tagatagctc ttattatttt       480
     gagatacgtc ccatcaatac ctaatttatt gagagttgtt agtatgaagt gttgttgaat       540
     tttgtcaaag accttttctt catctattga gataatcatg tggtttttgt ctttggttct       600
     gtttctatgc tggattacat ttattgattt gcctatattg aaccagcctt gcatcctgag       660
     aatgaagccc acttgatcat gttggataag ctttttgatg tgctgctgaa ttcagtttgt       720
     cagtatgtta ttgaggattt ttgcatcaat gttcatcgag tatattagtt taaaattctc       780
     ttttttggtt gtgtctctgc caggctttgg tatcaggatg atgctggctt cataaaatgg       840
     gttagggagg attcgctctt tttctattga ttggaatagt ttcagaagga atggtaccag       900
     ttcctccttg tacctccggt agaattcgac tgtgaatcca tctggtcctg gactcctttt       960
     agttggtaag ctattgatta ttgccacaac ttcagctcct gtttttgttc tattcagaga      1020
     ttcaacttct tcctggttta gtcttgggag agtgtatgtg tcgactaatt taccaatttc      1080
     ttctagattt tctagtttat ttgaacagag gtgtttgtag tattctctga tggttctttg      1140
     tatttctatg ggatcggtgg tgatatccct tttatcattg tttattgtgt ctatttgatt      1200
     cttctctttt tttctttatt agtcttgcta gtggtctatc atttttttga tcctttcaaa      1260
     aaaccagctt aaggagctct tttagggcag gcctgttgga gacaaaatct ctcagcattt      1320
     gcgtgtctgt aaagtatttt atttctactt catttatgaa gcttagtttg gttggatatg      1380
     aaattctggg ttgaaaattc ttttctttaa gaatgttgaa tattggcccc cagatgttag      1440
     tctgattggc ttccctttgt gggtcaccca acctttctct caggctgccc ttaacatttt      1500
     ttcattcatt tcaactttgg tgaatctgac aattatgtgt cttgggagtt gct             1553
//


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