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EBI Dbfetch

ID   ABBA01166420; SV 1; linear; genomic DNA; WGS; HUM; 1445 BP.
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AC   ABBA01166420;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276863842, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1445
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1445
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 3fce80eb4c0554376b591699031feb56.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211944.
DR   ENA-CON; KI270422.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01166420.1:1-1445; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1445
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1445 BP; 446 A; 301 C; 279 G; 419 T; 0 other;
     atccaatcat cacaaagaat tttctgagtg cttccgtttg gattttaggt gaagttattt        60
     cctttagtac cgtaggcctc aatgcagtcc aaatcagcaa tcacagattc tacaaaaaga       120
     gtgtttacaa actgctctat ccattggaag gttcaactct gtgagtcaaa tgcaatcatc       180
     ataaagtaga ttctcagaat gcttctatct actttttata tgcagatatt aacgtttccg       240
     ccacaggcct caaagccctc caaatgtcca cttgcagatt caagaaaagc aatgtttcat       300
     agctgctctg tcaagaggaa atttcactct gcaagttgaa cacaaacgtc ataaagtagt       360
     ttctgagaat gcttctgttt agtttttctg tgaagaagaa cccgtttcca acgaaatctt       420
     caaagaggtc cacacatcca cttgcagatt ccaaagaaag agagtttcaa aactgctcca       480
     tcaacaggat tgctcacctg tgtgagttga atgcagtcat cacaggaaac attctgagaa       540
     tgcttctgtc taggtttgat gtgaagatat acccgtttcg aaggaaggcc tcaaagtggt       600
     ccaaatatcc actagcagat tctacaaaaa gagtgtttga aagctgaact atgaaagcaa       660
     ggttcaactc tgtgagttga atgcaaacat cacaacgaag tttttgagaa tgattccgtg       720
     tagttctggg aagtttatcc cgtttccaac gaaatcttca gagaggtcca aatatccact       780
     tgcagattct acagaaagtg tgtttggaaa ctgcgccatc taaaggaatg ttcagctctc       840
     tgagttcaaa ccaaccatca caaaggattg tctgtgaatg cttccgtttg gtttttagat       900
     gaagttattt cctttactac agtaggcctc aaagcagtcc aaatctccaa tcgcagattc       960
     tacaaaaaga ttgtttacaa cctgctctat ctataggaat gttcaacact gtgagtcgaa      1020
     tgcaatcatc acaaagtagt ttctgagaat gcttctatct aggttttatg tgaagatatt      1080
     tccttttcca ccacaggcct caaagccctc caaatgtcca cctgcagatt ctagaaaaag      1140
     agggtttcag agctgctctg tcaagaggaa agttcaattc ttgaagtgga acacaaacat      1200
     cacaaagcag tttctgagaa tgcttctgtt tagtttttat gtgaagatga acccgtttcc      1260
     aaggaaatct tcaaagaggt ccacatatcc acttgcagat tccaaagaaa gagagtttca      1320
     aaactgctcc atcaacagga ttgttcacct ctgtgcgttg aatggagtca tcacaggaaa      1380
     cattctgaga atgcttctgt ctaggtttga tgtgaagata taccccgttg tcgaaggaag      1440
     gcctc                                                                  1445
//


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