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EBI Dbfetch

ID   ABBA01156626; SV 1; linear; genomic DNA; WGS; HUM; 2318 BP.
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AC   ABBA01156626;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276849991, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2318
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2318
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 1cdeb8c823d839e1d1735b5bc9a14856.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270509.
DR   ENA-CON; GJ212031.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01156626.1:1-2318; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2318
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2318 BP; 773 A; 471 C; 361 G; 713 T; 0 other;
     atgagatgaa cgcagacatc acaaagatat ttatctgtat acatctgcct agtttttatg        60
     tgaggatatt tccttttcca aatatccact tgcagattct acaaaaagat tttcaaactc       120
     ctcaatcaaa agaaaggttt acctctttga ggtgaatgca cacatcacaa agaagatttt       180
     gagattactt ctgtctagat tttatgtgaa gatatttaat tttctgccat tggccacaac       240
     gatctccaaa tatccactta caaattatac aaaaagagtg tttccatact gctaaatcaa       300
     aagaaaggtt caactctgtg agatgaacac acacatcatg aagaagtttc tcagaattct       360
     tctgtctagt ttttatgtga agatatttcc ttttccacca caggcctcaa ggcgcttgaa       420
     atgtccactt gcagattcta cagaaagagc gtttcaaaac tggtccatca acggaaatgt       480
     tcttctctgg gagatgaatg cgcatatcac aaaatgtttc tcagaatgct tctatctagt       540
     ttttatgtga agatatttcc ttttccacta ttggcgtcaa agcgtcccaa atgtcatctt       600
     gcagattcaa caaaagagag tttcagaact gctcaaacca aagagagagt taactctgtg       660
     agatgaatgc acacatcaca aagaagtttc taagattgct tctgtctaga ttttatgtga       720
     agatatttcc ttttctaacg tcagccacaa agtgctacaa atgtccactt gcagatcctt       780
     caaaaagaga gttaaagact tctcaatcaa aaggaaggtt taactctgtg aggtgaatgc       840
     acacatcaca aataagtttc tcagactgct tctctctaga ttttatgtaa agatatttcc       900
     ttttctacct taggccgcaa agcgctccaa atatccactt gcagattcta caaaatagtg       960
     tttccaaact gctcaatcaa aagaaaggtt caaatctgta aggtgaagac acacatcaca      1020
     aagaagtttc tcggaattct tctgtctagt ttttatgtga agatatttcc ttttccacca      1080
     taggccttta agtgctccaa atgttcactt gcagattcta caaaagagag tttcaaaact      1140
     gctctatcaa aagaaatttt taactctgtg agatgaatgc acacattaca aagaagtttc      1200
     acagattgct tctgtataga ttttatgtga ggatatttct ttttctacca tatgccacaa      1260
     agtactccaa atgtccactt gcagattcaa caaaaagagt gtttccacac tgctcaatca      1320
     aaaaaagatt caactcagtg agatgaacac acgcatcaca aagaagtttc tcataattct      1380
     cctgtgtagt ttttaagtga agataattta ttttccacaa taggtcacag ggcactccca      1440
     ttttccactt gcagatacta caaaaagaga gttccaaatc tgctccatca aaaaaaagat      1500
     caactctgtg agatgaacgc acacatcaca aagaagtttc tcagattgct tctgtctaga      1560
     ttttatgtta agatatttcc ttttctacca taggccacaa agccctccaa atgtccactt      1620
     gcagattcta caaaaagaat gttttgaaac tgctcaatca aaagaaatgt tcaactcttt      1680
     gagatgaatg cacacatcac aaacaaattt ctcagatagc ttctgtatag attttaggtg      1740
     agagtattta attttctaac ataggccgca agaagctcca aatatccact tgcggattct      1800
     acaaaaagcg agtttcaaaa ctgctctatc aaaagatagg ttaaaatctg tgacttgaat      1860
     gcacagctaa caacgaagtt tcccagaaag tttctgtgta gtttttatct gaagatattt      1920
     ccttttccaa aatagaccac aaagcttttc aaatatccac ttccagattc tacaaaaaga      1980
     gtgtttccaa attactcagt caagagagag attcaacact ttgtgatgaa tgcactcatc      2040
     acaaagactt ttcccggaat gattcttttt agtttttatt tgaagatatt tccttttcca      2100
     ctgtaggcca caaagggctc caaatatcca cctgcagatg ctacaaaaag agagattcaa      2160
     aactgctcaa tcaaaagata ggttcaactc tgtgagttga aggcacacat cacaaagtat      2220
     tttctcagaa tgcctctgtg tagtttttat gtgaagatat ttccttttcc acaatagcct      2280
     caaatcgctc caaatatcca attgcagatt ctgcaaaa                              2318
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