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EBI Dbfetch

ID   ABBA01153597; SV 1; linear; genomic DNA; WGS; HUM; 2969 BP.
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AC   ABBA01153597;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276845606, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2969
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2969
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 36be47659719f47b95caa51744aa8f70.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ212108.
DR   ENA-CON; KI270587.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2969
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2969 BP; 989 A; 595 C; 495 G; 890 T; 0 other;
     tacaaaaaga gtgtttcaaa actgctcaat caaaagaaag gttctactct gtgaggtgaa        60
     tgcacgcatc acaaagtggt ttctcagaat gcttctgcat agtttttatg tgaagatatt       120
     tccttctcca ccataggcct caaaaggctc caaatatcca cttgcagatt ctaaaaaaag       180
     agtgtttcaa aactgctcaa tccaaagaaa ggttctactc tgtgagatga atgcacacat       240
     cacaaagtag tttctcagaa tgcttctgca tagtttttat gtgaagatat ttccttctcc       300
     actataggcc tcaaaaggct ccaaatatcc acttgcagat tctgaaaaaa gagtgtttca       360
     aaactgctgt gtcaaaagaa agattcaact ctgttagatg aatgcacaga tcacaaagaa       420
     gtttctcagg ttgcttctgt gtagttttta tgtgaagata tttgtttttc cacagtaggc       480
     cccaatgagc tacaaatatc cactcgcaga ttctgtaaaa agagagattc aaaactgctg       540
     aatcaaaaga taggttcaac actgtgactt cagtgcacac ctcacaaaga agtttctcag       600
     aatgcttctt tgtagttttg atatgaagat atctccttct ccaaaataga tctcaaagcc       660
     ctccaaatat tcacttccag attctatgga aagagtctca aaactgctca gtcaaaataa       720
     aggtagaact ctgtgagaag aatgcacaca tcacaaagaa gtttctcaga atatatttgt       780
     gtagttttta tttgaggata gttccttttc taccataggc tgcaaagggc tccaaatatc       840
     cacttgcaga tggtacaaag agagagattc taaactgctc aatcaaaagg tagtttcaac       900
     cctgtgatat gaatgcacac atcccagaga agtttctcaa aatgcttctg tttagttttt       960
     atttgaagat atttcctttt ccaccatacg cctcaaaggt ctccaaatat ccacatgctg      1020
     cttctacaaa aagagagatt aaaaaatgtt ctatcaaaat ataggttcaa ctctgtgagt      1080
     tgaatgcgca catcacaaaa agtttctcag aatgcttctg tgtagttttt acgtgaagat      1140
     atctcctttt ccacaatagg cctcaaagct ctccaaatat ccgcaagcag agtctacaaa      1200
     gagagagatt caaaactgct caatgaaaag ataggttcaa ctctgtgaga tgagtgcaca      1260
     tctcacaaag aagttcctca gaatgcttct gtgtagtttt tatgtgaaga tatttccttt      1320
     tccgaaatag acctcaaagt cctccaaata tccacttcca gactctataa aaaggtgttt      1380
     caaaactact caatcaaaag aaaggttcaa ctatatgaga taaatgcaca catcacaaaa      1440
     tggtttctca gaatgcttct gtgtagtttt tatttgaaga tattttcttt tccaccatgg      1500
     gccacaaagg gctactaaaa cccacttgca gattctacaa aaagagagat tcaaaacggc      1560
     tcaatcaaaa gataggctct cccctgtgaa ttgaatgcac acatcacaaa gaagtttctc      1620
     agaatgtttc tgtgtagttt tttttttgaa gatatttcct tttccacagt acgcctcaaa      1680
     gcgctccaaa catccattgc taattcttca aaaagatcgc ttcaacactg ctctataaaa      1740
     aggaagtttc aactccatta gatgactgca cacatcacaa agaagtttct cagaatgcct      1800
     ctgtgtagtt tgtatgtgaa gatatttcct tttccacagt aggccacaaa gggctccaaa      1860
     tatctacttg cagaatcttc aaaaagagtg tttcaaaagt tctcaatcaa aagaaaagtt      1920
     aaactccatg agatgaatgc atacatcaca aagaaagttc tgagaatgct tctgtcttgt      1980
     ttttatgtga agatatttga ttctctcctg taggcaacaa ggcgctccaa atatccactt      2040
     tcagatacta caaaaagagt gttttgaaac tgctcaatca tatgataggt tcaaccttgt      2100
     gagatgaatg cccacatcac aaagtagctt ctcagaatgt ttttgtgtag tttttatttg      2160
     aagatatttc cttttccacc ataggccaca aagggctcca aacttccact tgcagattct      2220
     acaaaaagag agattcaaag ctgttcaatc aaaagatagt ttcaactctg cgtgttgaat      2280
     gcacaaatca caaagtagtt tctctgaatg cttctgtgtt gtgtttgttt atgtgaagat      2340
     atttgctttt ccactatagg gcaaaatagg gctccaaata tccacttgca gattctgcaa      2400
     aaagggagat tcaaaactgt acaatcaaaa gataagttca aatatgtgag ttgaatgcac      2460
     acaaaacaaa gaagtttctc agaatacctc tgtgtagttt ttaggtgaat atatttgatt      2520
     ttccacagta ggcctcaaag ggctccaaat atccactttc agattctgaa ataagagaga      2580
     ttcaaaactg ctcaatcaaa cgataggttc aaatctgtga gttgaatgca cacctcacaa      2640
     agaagtttct cataaagttt ctgtgtagtt tttatgtgaa gatatctcct tctccaaaat      2700
     aggccccaat gacctccaaa tatgcacttc cagattccat gacaatagtg cttcaaaact      2760
     gctcaatcca aagaaatgtt caacactgtg tgatgaatgc actcatcaca aagaagtttc      2820
     tctgaatgct tctgtgtatt ttgtatttga agatatttcc tcttccacca tagggctcat      2880
     agggctccaa atatccactt gcagattcta caaaaagagt attccaaaac tgctcaatca      2940
     aaagaaacgt ctaaaactgt gagatgaat                                        2969
//


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