spacer

EBI Dbfetch

ID   ABBA01145982; SV 1; linear; genomic DNA; WGS; HUM; 1216 BP.
XX
AC   ABBA01145982;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276834589, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1216
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-1216
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 76f9f3315fa4b831e93c36cd88196480.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270388.
DR   ENA-CON; GJ211920.
DR   BioSample; SAMN02981236.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1216
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 1216 BP; 364 A; 197 C; 253 G; 402 T; 0 other;
     catagagcag gtttgaaaca ctctttctgt agtatctgca agcggacgtt tcaagcgctt        60
     tcaggcgtgt ggtgaaaaag gaaatatctt caaataaaaa ctagacagaa gcattctcag       120
     aaacttattt gcgatgtgtg ttctcaacta acagagttga acctttgttt tgatacagca       180
     ttttggaaac actctttttg tagaatctgc aggtggatat ttggatagct ttgaaggttt       240
     cgttggaaac gggaatatct tcatataaaa tcaagacaga agcattctca gaaacttctc       300
     tgtgatgttt gcattcaact catagagttg aacaattcct ttcatagagc tggtttgaaa       360
     tactcttttt gtaatatttg gaagtggata ttggcagcgc tttgaagctt atggtgaaaa       420
     aggagatatc ttctcctaaa taccagacag aagcattctc agaatctttc ttgtgatgtg       480
     tgtactcaag taacagagtt gaaccttcct tttgacagag cagttttgaa gcactctttt       540
     tgtagaatct gcaagtggat atttggatac ctttgaggat ttcgttggac acgggatatc       600
     ttcatataaa atctagacag aagcattctc agacacttct ttgtgctgta tgtcttcaat       660
     taacagagtt gaacctttgt ttggaaacag cattttggaa acgttccttt agtagaatct       720
     gcaagttgat atttagatag ctaggaagat ttccttggaa acgggaatat cttcacataa       780
     aatctagacg gaagcattct cagaaagtgc tttgtgatgt ttgcattcaa gtcacagagt       840
     tgaatattgc cttttataga gcaggtttga aacactcttt ctgcactacc tggaggtgga       900
     catttagagc gctttgagtc ttatgttgaa aaaggaaata tcttcccata aaaactagac       960
     agaagcattc tcagaaactt gtttgtgatg tgtgtattca actaacagag atgaatcttt      1020
     ctttttacag agcagttttg aaacactctt tttgtggaat ctgaaagtgg atatttggat      1080
     agcttttgag gatttcgttg gaaacgggat tacatataaa acctagagag aaggattctc      1140
     aggaacttct ttgtgatgtt tgcattcacg tcacagaact gaacattccc tttcatagag      1200
     catgtttgaa acactc                                                      1216
//


spacer
spacer