spacer

EBI Dbfetch

ID   ABBA01140017; SV 1; linear; genomic DNA; WGS; HUM; 1368 BP.
XX
AC   ABBA01140017;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276825986, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1368
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-1368
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 53afe12d1371f250a3d1de655345d374.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211873.
DR   ENA-CON; KI270334.
DR   BioSample; SAMN02981236.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1368
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 1368 BP; 385 A; 248 C; 300 G; 435 T; 0 other;
     atatcttcac ataaaagcta gacagaagta ttctcagaca gttctttgtg atatgtccat        60
     tcaactcaca gagttgaatc tttcctttga tagagaagat tggaaacgtt ctttctgcat       120
     actctgcaag tgttcatttg gagcgcttag aggctcatgg tggaaagtga aatatcttca       180
     catataaact agatagaagc attctcagaa acatttaggg atgtgtgaac tcaactcaca       240
     gagttcaact ttccttttga tagagctgtc ttgaaatcct gcttttgcag aatctgcttg       300
     aggatatttg gagctctttc aggaattcgt tgccaacggg atatctgcac aaaattgaca       360
     gaagcattct cagaaacttt ttttgggatg tgtggattca actcacacag ttcaaccttc       420
     cttttgatag agcagtcttg aaatactgct tttgaagaat ctgcttcagg atatttggag       480
     ctctttgagg aattcgttgc aatcgggata tctgcacata caaattagac agaagcattc       540
     ccagaaactt tttcgtgatg tgtggattca actcacagaa ttcaaccttc cttttgatag       600
     agcattcctg aaaccctgct tgggtagaat ctgcttgagg atatttggag ctcttggagg       660
     aattcgtggc aaacgagata tctccacata caatctagac agaagcattc tcagaaaatt       720
     ttgtgttgtg tgcattcaag tcacagagtt gaacgtcttt ttggatagat cagttttgaa       780
     accatccttt tctagaatca gcttgaggat atttgtaggt ctttgaggaa ttcgttgtaa       840
     acgggatatc tgcacataca aggtagacag aaacatggtc agagactttt ttgtgatgtg       900
     tgaactcaac tcacagagtt caacctttct tttgatagag cagttttgca gcactgcttt       960
     tgtagaatct gcctgaggac atttggagct ctttgaggaa ttcgttgtaa acgggatgtc      1020
     cgcacataca aactagacac aactattctc agaaactttt ttgggatgtg tggattcaac      1080
     tcacagagtt cacccttcct tttgatagag cagtcttgaa atactgcttt tgtagaatct      1140
     gcttgaggat atttggagct cttgaggaat tcgttgtaaa cggggtatct gcacatacaa      1200
     actggacgga agcattctca gaaacttttt tgtgatgtct gcattcaact cacagagttg      1260
     aaccttcctt tgggagagca gctctgaaac agtgtttttg cagtatcagg aagtggatat      1320
     ttggagcgat atgaggccta tggtggaaaa ggagatacct tcacatgg                   1368
//


spacer
spacer