spacer

EBI Dbfetch

ID   ABBA01137754; SV 1; linear; genomic DNA; WGS; HUM; 1179 BP.
XX
AC   ABBA01137754;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276822738, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1179
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-1179
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 7bb9612f733fb7f098be79499d46350c.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270412.
DR   ENA-CON; GJ211935.
DR   BioSample; SAMN02981236.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1179
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 1179 BP; 407 A; 242 C; 211 G; 319 T; 0 other;
     aaaagagtgt ttcaaaactg ccctgaataa aggaaggttc aactctgtga gttgaattca        60
     cacaacacaa aggatttact gagaattctt ctgtctagca gtaaatgaaa aaatctctct       120
     tccaacgaag tacacaaagg ggtccaagta ttcacttgca gactttacag acagagtctt       180
     tccaaactgc tctataaaaa gaaaggtgaa actctgtaag ctgaacgcag acatcacaaa       240
     gcagtttctg agaatgattc tgtgtagttt ttacacgaag agatttccat ttcaaagatt       300
     ggcctcaaat cgcttgaaat ctccacttgc aaattccaca gaaagagttt ttcaaaactg       360
     ctctgtctaa aggaaggttc aactctgtga cttgaataca cacaacagaa agaagttact       420
     gagaattctt ctgtctagca ttatatgaag aaatcccgtt tccaacgaag gcctcagaga       480
     ggtccaaata tccacttgca gactttacaa atagagtgtt tccaaactgc tctattaaaa       540
     gaaaggttaa actctgtgtg ttgaaggcac acatcagaaa ctagtttctg cgaatgactc       600
     tgtgtagttt tactacgaag atatttccat gtctaagatt ggcctcaaat cgcttgaatt       660
     ctccacttgc aaattccaca caaagagtgt ttcaaaactg ctcaggataa aggatggttc       720
     aactctgtgt gttgaataca cacagcaaaa agatttactg agaattcttc tgtctagcag       780
     tatatgaaaa aattccgctt ccaatgaagg cctcaaaggg atccaaatat tcactagcag       840
     acattacagg cagagtcttt cctaactgct ctatgaaaag aaaggtgaaa ctctgtgagc       900
     tgaacgcaca catcacaaag tagtttctga caatgattct gtcaaatttt acacgaagat       960
     atttccattt caaagattgg cctcaaatca cttgaaatcc ccacttgcaa attgcacaga      1020
     aagagttttc caaaactgct ctgtctaaag gaaggttcaa atctgtgaga tcaatacaca      1080
     caacacaaag aggtgactga gaattcttct gtctagcatt atatgaagaa atcccgtttc      1140
     caacgaacgc ctcaaagagg tccaaataag cacttgcag                             1179
//


spacer
spacer