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EBI Dbfetch

ID   ABBA01134440; SV 1; linear; genomic DNA; WGS; HUM; 7046 BP.
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AC   ABBA01134440;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276818174, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-7046
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-7046
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 9f26945f9f9b3f865c9ebe953cbbc1a9.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270581.
DR   ENA-CON; GJ212101.
DR   ENA-CON; DS487874.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01134440.1:1-7046; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..7046
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 7046 BP; 2717 A; 1455 C; 1362 G; 1512 T; 0 other;
     aaggacagtt tgttccacaa taaatgctgg gaaaacaagt ccacattgaa accagtaaag        60
     ttgaatcttt atcacattcc aagtacaaaa attaaataaa aatagattaa agacataagt       120
     gttcaacatt agtggtttct aatggttgtt ttcatttatg tggggtcagt actaacatga       180
     acacctttat acacacaaac tagaaaactt taaagaaatg gatacattac tagatataca       240
     cactctccca agattaagcc aggaagacaa ttatttcctg aatggaccaa taaaaagctc       300
     tgatattata taggtaataa gtagcttgcc aatcaaaaaa ataaaagccc tggactttat       360
     ggatttacag ccaaattcta ccaaatgtac aaggaagagc tggtacaatt cctacagaaa       420
     ctatccccaa aaattgagga ggacggtctc ctccccaact cattctataa ggacagcatg       480
     atcttgacac caaaacctgg cagagacaca acaaaaacac aaaattaacc gggcttggta       540
     gcagacacct gtagtcccag ctacttggga ggctgaggca ggagaatgac atgaacccag       600
     gaggcggagc ttgcattaag cagagattgc accagtgcac tccagcctgg gcaacagagg       660
     gagactccat caaaaaaaaa aaagaaagaa agaaaagaaa acttcaggcc aatattcttc       720
     acaaacatca atacaaaagt tctcagaaaa atatttgtaa accaaatcca gcagcacatc       780
     aaacaggtaa tccgtcatta tcaagtaggc tgcctcctta ggatgcaagg ttggcccagc       840
     atgtgcaaat caataaatgt aatacatcac ataaacagaa ctaaatacaa aaaacagacg       900
     attatcccaa tagatgcaga aagtaataaa agccgtgtat aaaaaaccca cagccaacaa       960
     tctgttgaat gggcaaagtt gggagctttt tttctgaaaa ccagcacaag gcaagaatgc      1020
     cctctctcac catttctatt caacatagta ttgaaagtcc tgacgagagc aatcaggcta      1080
     gagaaagaaa tacaaaaagc atccaaatag gaagagagaa agccaaacta tttctgtttg      1140
     caaataacat aattctatat ctagaaaacc ctgtagtttc aggtacaaag cttctttagt      1200
     taacaaacaa cttcagcgaa ttttcaagat actaaatcaa tgtgcaaaga tcactaacat      1260
     ttctctacac caatgataac cacactgaca gcaaaatcag aaaggccatc ccattcacaa      1320
     ttgccacaaa aatgataaaa tacctggaaa tgcagctcac cagggaggtg aaagagctct      1380
     acagtgagaa ttacaaaaca ctgctcaaat aaatcagaga agacacaaac aaatggaaaa      1440
     ccacctcatg ctcatggata ggaagatcca atataactaa aatggctata cttcacaaag      1500
     caattgacag atttaatgct atttccatca aactgccaat aaaatttttt acagagctag      1560
     aaaaaactat tttaaaattc ctataggctg ggtgcagtgg ctcacgcctg taatcccagc      1620
     actctgggag gccgagggct gcagatcatg aggtcaggag atcgagacca tcctggccaa      1680
     catggtgaaa ctccttctca actaattttt taatagctgg gtgtagtggc aagcgcttgt      1740
     aatcccagct actcgggagg ctgaggcagg agaatccatt gaaccaggta gtcagaggtt      1800
     gcagtgagct gagattgcac cactgcactc cagcctgatg acagagtgac attccatcaa      1860
     aaaaaaatta tatatatgaa accaaaaagg agcacacata gtcaaggcaa tcctaagcaa      1920
     aaaagaacaa agctgcaggc atcaggttgc ctggcttcaa attacactac agggctatag      1980
     taacgaaaac agcataatat tgataaaaac agacacatag acaaatggag cagaatagag      2040
     agcccagaaa caaggctgca catctatgcc atgtgataat tgacaaggct gacaaaaaca      2100
     agcaatgaga aaaagattat ttattcaata agtggtgctg gaataattgg ctggcaacat      2160
     gtggaagatt gaagctggac cccttattta catcatatac aaaaaaaaat caactcaaga      2220
     ctgattgaag acttaaatat aaaatcttta tgtataaaaa ccatgaaaga caatccaggc      2280
     aataccatcc tggatatagg aatgggcaaa gatttcatga tagaaagacc aaaagcaaca      2340
     gcaagaaaag caaaaattaa caagtaggat ttaattaaag taaagagatt ttgcatagca      2400
     gaaaaaaaaa actattaaca gagtaaacag aaaacctatg gagtggaaaa aaaaatattt      2460
     gtaaactatc catctaacaa aggtctaata tctagcatct ataaggaact taaatttaca      2520
     aaagaaaaac aaccccatta aaaagtgggc aaagacatga acggacagtt ttcgaaagaa      2580
     gacatacatg aggccaacaa gtgtatgaga aaaagctcag aatcaatgat agttagagaa      2640
     atgaaaatta agtgatcctt gtgcctcagt ctcccaaata gctgggacta caagcaagca      2700
     ccacaatgcc cagctaattt ttgaattttt agtagagatg gggttttgcc atgtttccat      2760
     ggctggtctc gaactcctga gcttaagtga tctgcctgcc tcagcctccc aaagttttgg      2820
     gattacaagt gtgaaccacc atgcctggac tccattattc aatctaagaa ctgcatgcag      2880
     aaatgtgttc aggttttaaa attttattca cttctgcact gatactttca aaccaaattt      2940
     tatagcagca tcatttacag taaaaaattt aaaaagaaat ccagatatct tctaagagtc      3000
     aaacagatga agaaaatatg gtatatacac acaacagaat attatttatc cttaaaatga      3060
     atgtgggggg gaggagccaa gaaggccgaa taggaacagc tccgctctac agctcccagt      3120
     gtgagtgacg cagaagacgg gtgatttctg catttccaac tgagttacca ggttcaactc      3180
     actggggagt gccagacagt gggtgcagtg caccgtgcat gagccgaagc agggcaaggc      3240
     attgcctcac cagcgaagtg caaggggtca gggaattccc tttcctagtc aaagaaagtg      3300
     gtgacagatg gcatctggaa aatcgggtca ctcccaacct aacactgtgc ttttccaaca      3360
     ggcttaaaaa atgtcacacc aggagattat atcctgcacc tggctcagag agtcctacgt      3420
     ccacggagcc tcactcattg ctagcacagc agtctaagat caaactgcaa agtggcagtg      3480
     aggctggggg agggatgccc gccattgcta aggcatgagt acgtaaacaa agtggccagg      3540
     aagcgggaac tgggtggagc ccaccacagc tcaaggaggc ctgcctgcct ctgtaggctc      3600
     cacctctggg ggcagggcac agacaaacaa aaagacagca gtaaccgctg cagacttaaa      3660
     tatccctctc tgacagcttt gaagagtgta gtggttctcc cagcttgcag cttgagatct      3720
     gagaatggac agactgcctc ctcaagtggg tccctgactc ctgagtagcc taactgggag      3780
     gcacccccaa gtatggttgg actgaaacct cacacagcct ggtactcttt tgagacaaaa      3840
     tttccagagg aacaatcagg cagcagcatc tgcagttcac caatatctgc tgttctgcag      3900
     tgagcgctgc tgataagcag gcaaacaggg tctggaatgg acctccagta aactccaaca      3960
     gacctgcagc tgagggtccc aactgttaga aggaaaacta ataaacagaa aggacattca      4020
     caccaaaaac ccatctgtac ataaccatca tcaaagccca agttagataa aaccacaaag      4080
     atgggaaaca aatagaacag aaaaactgga aactctaaac ttcagagcac ctctccgcct      4140
     ccaaaggaac acagctcctt accagcaatg gaacaaagct ggatggagaa tgacttcgat      4200
     gagtggagac aagaaggctt cagatgatca aacttctctg agctacagga ggagattcga      4260
     accaatggca aagaagataa aaactttgaa aaaaaaatag atgaatgggt cactagaata      4320
     accaatgcag agaagtccct aaaggacctg atggagctga aaaccaaggc atgagaacta      4380
     cgtgatgaat gcagaagcct cagtagccga tgcgatcaac tggaagaaag ggtatcagtg      4440
     atggaagaca aaaggaatga aatgaagaga gaagagaagt ttagcaaaaa agaataaaaa      4500
     gaaatgaaca gagcctccaa gaaatacggg actatgtaaa aagaccaaat ctatgtctga      4560
     ttggtgtacc tgaaagtgac gggtagaatg gaaccaaatt ggaaaacact ctgcaggata      4620
     ttatccagga gaacttcccc aatctagcaa gacaggccaa cattcaaatt cagaaaatac      4680
     atagaagtcc actaacgtac tcctcgagaa tagcaactcc aagacacata attgtcagat      4740
     tcaccaaagt tgacatgaat gaaaaaatgt taagggcagc ctgagagaaa ggttgggtga      4800
     cccacaaagg gaagcccatc agactaacat ctgggggcca atattcaaca ttcttaaaga      4860
     aaagaatttt caacccagaa tttcatttcc agccaaacta agcttcataa atgaagtaga      4920
     aataaaatac tttacagaca cgcaaatggt gagagatttt gtctccaaca ggtctgccct      4980
     aaaagagctc cttaagctgg ttttttgaaa ggatcaaaaa aagatagacc actagcaaga      5040
     ctaataaaga aaaaaagaga acaatcaaat agacacaata aacaatgata aaagggatat      5100
     caccaccaat cccatagaaa tacaaactac catcagagaa tactacaaac acctctgtgc      5160
     aaataaacta gaaaatctag aagaaattga taaattagtc gacacataca ctctcccaag      5220
     actaaaccag gaagaagttg aatctctgaa tacaacaaaa acaggagctg aagttgtggc      5280
     aataatcaat agcttaccaa cgaaaaggag tccaggacca gatggattca cagccgaatt      5340
     ctaccggagg tacaaggagg aactggtacc attccttctg aaactattcc aatcaataga      5400
     aaaagagtga atcctcccta acccatttta tgaggccaac atcatcctga taccaaagcc      5460
     tggcagagac acaaccaaaa aagagaattt taaactaaca tactcgatga acattgatgc      5520
     aaaaatcctc aataacatac tgacaaaccg aatccagcag cacatcaaaa agcttatcca      5580
     acataatcaa gtgggcttca ttctcaggat gcaaggctgg ttcaatatag gcaaatcaat      5640
     acatgtaatc cagcatagaa acagaaccaa acacaaaaac gacatgatta tctcaataga      5700
     tgaagaaaag gcctttgaca aaattcaaca acacttcata ctaaaaactc tcaataaatt      5760
     aggtattgat gggacgtatc tcaaaataat aagagatatc tatgccaaac ccattcatac      5820
     tgaatgggca gaaactggaa gcattccctt tgaaaactgg cacaagacag ggatgctctc      5880
     tctcaccact cctattcaac atagtgttgg aagttctggc cagggcaatc aggcaggaga      5940
     aggaaataaa gggtattcaa ttatgaaaag aggaagtcaa attgtccctg tttgcagaca      6000
     acatgattgt atatctagaa aaccccattg tctcagccca aaatctcctt aagctgataa      6060
     gcaaattaag caatgtctca ggatacaaaa tcaacataca aaaatcacaa gcattcatat      6120
     acaccaacaa cagaaaaaca gagagccaaa tcatgagtga actcccattc acaatgtctt      6180
     caaagagaat aaaataccta ggaatccaac ttacaaggga tgtgaaggac ctcttcacgg      6240
     agaactacaa accactgctc attgaaataa aacaggatac aaacaaatgg aagaacattc      6300
     catgctcatg ggtaggaaga atcaatatcg tgaaaatggc catactgccc aaggtaattg      6360
     atagattgaa tgtcatcccc atcaagctac caatgacttt cttcccagaa ttggaaaaaa      6420
     ctactttaaa gttcctatgg aaccaaaaaa gagctggcat cgccaagtca attttaagcc      6480
     aaaagaacaa agctggaggc atcacactac ctgacttcaa actatactac aaggatacag      6540
     taaccaaaac agcatggtac tggtaccaaa acagagatat agaccaatgg aacagaacag      6600
     agccctcaga aataatgccg catatctaca actatctgat ctttgacaaa cctgagaaaa      6660
     acaagaaatg gggaaaggat tccctattta ataaatggtg ctgggaaaac tggctagcca      6720
     tatgtggaaa gctgaaattg gatcgcttcc ttacacctta tacaaaaatc aattcaagat      6780
     ggattaaaga cttacatatt agacctaaaa ccataaaaaa cctagaagaa aacctaggca      6840
     ttaccattca gaacataggc atgggcaagg acgtcatgtc taaaacacta aaagcaatgg      6900
     caacaaaagc caaaatagac aaatgggatc taattaaact aaagagcttc tgcatagcaa      6960
     aagaaactac tgtcagagtg aacaggcacc tacaaaatgg gagaaaaatt tcacaaccta      7020
     ctcatctgac aaagggctaa tatcca                                           7046
//


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