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EBI Dbfetch

ID   ABBA01132178; SV 1; linear; genomic DNA; WGS; HUM; 2656 BP.
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AC   ABBA01132178;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276814866, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2656
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2656
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; dbc92c9a92e558946e58b4909ec95dd5.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270374.
DR   ENA-CON; GJ212198.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01132178.1:1-2656; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2656
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2656 BP; 783 A; 431 C; 544 G; 898 T; 0 other;
     gatgtgtgca ttcacctcac atagttgatc ctttcttttg attagaggag gcttgaagca        60
     ctctttttcc ttttttattt cattttttat tattttttta ttttttttta tttttttatt       120
     attatacttt aagttttagg gtacatgtgc acaatgtgca tgttagttac atatgtagca       180
     ctctattgat agaacccaga agtggatatt tggaggactt tgaggcctat tttggaaaag       240
     aaatatcatc acctaaaaac tacacagaaa tattctgaga tacttctttg ttatgtgtgc       300
     attaaactca cagaactgaa ggtatgtttt ggttgagcag tttggagtct ctctttttgg       360
     acaatctgaa agtggacatt tggagcgctt tgaggcctac tgtggaaaag caaatatctt       420
     cacataaaaa ctacacagaa gcattctgag gaacttctct gtgatgtgtg cattcaactc       480
     acagagtcta acctatcttt tgattgagca gttttgaatc tctctttttg aagaatctgc       540
     aagtggatat tttgagccct atgcggccta tggtggaaaa agaaatatct tcaaataaaa       600
     actaaacaga agcattctga gaaacttctt tgtgatattt gcattcatct cacagcgttg       660
     aacgtatctt atgattgagc agttttgtaa cactcttttt gtagaatctg caagtggatg       720
     tttggagtgc cttgaggcct attgtggaaa aggaaatatc ttcacataaa aactacatgg       780
     aagcattctg agaaacttct ttgtgatgtg tgcaatcatc tcacagagtt gatcttttct       840
     tttgattgaa cagttttgaa acactgtttc tgtaaaatct gcaagtggat atttggagcg       900
     ctttgaggcc tactgtggaa aagcaaatat attcacatga aaactacaca gaagcattct       960
     gagaaacttc gatgtgagag gtgcattcaa ctcacagagt cgaacctatc ttttgattga      1020
     gcagttttga atctcccttt tggcagaatc tgcaagtggg tattagtaga gctttgaggc      1080
     ctactgtgga aaatgaaata tcttcacaca aaaaccacac agaagaattc tgagaagctt      1140
     ctttgtgatg tgtgcattca actcagatag tggaacctat cttttgattg ggctgttttg      1200
     aatctctctt tttgtagtat ctgcaagtgg atatttggag ccctttgtgg cctatggagg      1260
     aaaaggaaat atcttcaaat aaaaactaca gaaaagcatt ctgagaaact tctttgtgat      1320
     gtgtgcattc atcacactgg atagaacctc ttatgattga gcagtttgga aacactcttt      1380
     ttatagaatc tgcaagtgta tatttggagg gctttgaagc cgtttgtgga aaaggaaata      1440
     tcttcacata aaactacaca gaagcattct gagaaagttg tttgtgatat gggcactcat      1500
     ctcacagagt tgatcctttc ttttgattga gcagttttga aacacttttt gaagaatctg      1560
     gaagtggatg tttggagggc tttgagtcct cttttggaaa aggaaatatc ttcacataaa      1620
     aactacacag aaggattctg agaaacttct ttgttatgtg tgcattcaac tcacagtgtt      1680
     gaacccatgc tttgaatgag cagtttttaa tctctctttt tggagaatct gcaagtggaa      1740
     atttggagag ctttgaggcc tactgtggaa aagcaaatat cttcacataa aaactacaca      1800
     gaagcattcg gagaaacttc tttttgatgt gtgcattcat ctcacatagt tgaaactctc      1860
     ttttatttga atagtttgga aacactcttt ttgcagtatc tgcaagggga catttggcac      1920
     actttgctgc caatggtaga aaaggtaata tcttcacata catactagac ggaagcattc      1980
     tgagaaactt ctttgtgatg tgtgcgttca tctcaccgag ttgaacctct cttttgattg      2040
     agcagtttgg aaacactctt tttgtagaat ctgctagtgg acatttggag cgctctggag      2100
     cctatggtag aaaaggcaaa atcttcaact aaaatctagt aagaaggaat ctgagaaact      2160
     tctttgtgct gggtacattc atctcacaga gttaaacctt tctcttgatt gagcagtttt      2220
     gaactctctt tttgtagaat atgcaagtgg acatttggag tgctttaagg cctaaggtgg      2280
     aaaaggaaac gtcttcgcat aaaaactaga cagaataatt cgagaaacta ctttgttatg      2340
     tgtgcattca tctcacagag ttgaaacttt cttttgattg aacagtttgg aagcactgtt      2400
     tttgtagaat ctgcaagtgg acatttggag ctctttgtgg cctatggcgg caaaggaaat      2460
     atcttcacat aaaatctaga cagaagcaat ctgagaaact tctttgtgat gtgtgcattc      2520
     atctcacaga gataaacctt tctttagatt gagcagtttt gaaattctct ttttgtataa      2580
     tctgcaagtg gatattttga ctgatttgag gcctatggtg gaaaaggaaa tatcttcaca      2640
     taaacattag acagaa                                                      2656
//


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