spacer

EBI Dbfetch

ID   ABBA01131506; SV 1; linear; genomic DNA; WGS; HUM; 1143 BP.
XX
AC   ABBA01131506;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276813873, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1143
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-1143
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 7c03ca4756c1620f318fb189214388d8.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211913.
DR   ENA-CON; KI270395.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01131506.1:1-1143; homo_sapiens.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1143
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 1143 BP; 378 A; 229 C; 194 G; 342 T; 0 other;
     cacctgctct ataaaaggga atattcacct ctgtgacttg aatgcaaaca tcacaaagca        60
     ctttctgaga atgcttccgt ctagatttta tatgaagata ttcccgtttc caaggaaatc       120
     ttcctagcta tctaaatatc aacttgcaga ttctactaaa ggaatgtttc caaaatgctg       180
     tatccacaca aaggttcaac tctgttaatt gaggacatac agcacaaaga agtttctgag       240
     aatgcttctg tctagatttt atatgaagat atcccgtgtc taacgaaatc ctcaaaggta       300
     tcaaaatatc cacttgcaga ttctacaaaa agagtgcttc aaaactgctc tgtcaaaatg       360
     aaggttcaac tctgttactt gagtacacac atcacaagaa agattctgag aatgcttctg       420
     tctggttttt aggagaagat atctcctttt tcaccatagg cttcaaagcg ctgccaatgt       480
     ccacttccaa atattacaaa aagagtattt caaaccagct ctatgaaagg aagtgttcaa       540
     ctctgtgagt tgaatgcaaa catcacagag aagtttctga gaatgcttct gtcttgattt       600
     tacatgaaga tattcccatt tccaaggaaa tcttcctagc tatctaaata tcaacttgca       660
     gattctacta aaggaatgtt tccaaaatgc tgtatccaca caaaggttca actctgttaa       720
     ttgaggacat acagcacaaa gaagtttctg agaatgcttc tgtctagatt ttatatgaag       780
     atatcccgtg tccaacgaaa tcctcaaagg tatcaaaata tccacttgca gattctacaa       840
     aaagagtgct tcaaaactgc tctgtcaaaa ggaaggttca actctgttac ttgagtacac       900
     acatcacaag gaagtttctg agaatgcttc tgtctggttt ttaggagaag atatttcctt       960
     tttcaacata ggcctcaaag cgctgcaaaa gtccacttcc aaatattaga aaaagagtgt      1020
     ttcaaacctg ctgtatgaag ggaagtgttc aactctatga gttgaatgca aacatcacag      1080
     agaagtttct gagaatgctt ctgtcttgat ttcatatgaa gatattcccg tttccaacga      1140
     aac                                                                    1143
//


spacer
spacer