spacer

EBI Dbfetch

ID   ABBA01129916; SV 1; linear; genomic DNA; WGS; HUM; 2145 BP.
XX
AC   ABBA01129916;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276811153, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-2145
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-2145
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 1537ec12b9c58d137a2d4cb9db896bbc.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270418.
DR   ENA-CON; GJ211940.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01129916.1:1-2145; homo_sapiens.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2145
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 2145 BP; 655 A; 435 C; 420 G; 635 T; 0 other;
     tcgatgcatc atcacaaagt agtttctgag aatgcttcca tctaggtttt atgtgaagat        60
     atttcctttt ccaccacagg cctcaaagcc ctccaaatgt ccacttgcag attctagaga       120
     aagagggttt cagagctgtt ctgtcaagag gaaagttcaa ttcttgaagt ggaacacaaa       180
     catcacaaag cagtttctga gaatgcttct gtttagtttt tctttgaaga tgaacccgtt       240
     tccaaggaaa tcgtcaaaga ggtccacata tccacttgca gattccaaag aaagagaggt       300
     tcaaaactgc tccatcaaca ggattgttca cctctgtgcg ttgaatgcag tcatcacagg       360
     aaacattctg agaatgcttc tgtctaggtt tgatgtgaag atatacccgt ttcgaaggaa       420
     ggccacaaag tggtccaaat atccacttgc agattctaca aatagagtgt ttgaaagctg       480
     aactatgaaa ggaaggttca actctgtgag ttgaatgcaa aagtgagaaa gatatttctg       540
     agaatgcttt cgtgtagttc tgggaaattt atcccatttc caacgaaatc ctcagagagg       600
     tccaaatatc cacttgcaga ttctacagaa agtgtgtttg gaaactgctg catctaaagg       660
     aatgttcagc tctctgagtt caatccaatc atcacaaaga attttctgtg aatgcttccg       720
     tttggttttt agatgaagtt atttccttta gtaccgtagg cctcaatgca gtccaaatca       780
     gcaatcacag attctgcaaa aggagtgttt acaaactgct ctatctattg gaaggttcaa       840
     ctctgtgagt cgaatgcaat catcacaaag taggttctca gaatgcttct atctagttat       900
     tatatgcaga tatttacgtt tccgccaaag gccccaaaac cctccaaatg tccacttgca       960
     ggttctagaa aaacaatgtt tcatagctgc tctgtcaaga ggaatgttca actctgcaag      1020
     ttgaacacaa acatcacaaa gttgtttctg agaatgctac tgtttagttt ttctttgaag      1080
     atgaaaccgt ttccaacgaa atcttcaaat aggtccacat atccactttc agattccaga      1140
     gaaagagaga ttcaaaactg ctccatcagc aggattgttc acctctgtgc gttgaatgca      1200
     gtaatcacag gaaacattgt gagaatgctt ctgtctaggt ttgatgtgaa gatatacccg      1260
     tttcgaagga aggccacaaa gtggtccaaa tatccacttg cagtttctac aaaaagagtg      1320
     tttgaaagct gaactatgaa agcaaggttc aactctgtga gttgaatgca acatcacaaa      1380
     gtagtttctg agaatgcttc tgtgtagttc tgggaattta tcccttttcc aacgaaatcc      1440
     tcagagaagt cccaatatcc acttgcatat tctacagaaa gtgtgttggg aaactgcgcc      1500
     atctaaagga atgttcagct ctcttagttc aatccaatga tcacaaagta ttgtctgtga      1560
     atgcttccgc ttggtttttc gatgaagtta tttcctttac tacagtaggc ctcaaagaag      1620
     tccaaatctc caatcgcaga ttctacagaa agattgttta caacctgctc tatctatagg      1680
     aattttcaac tctatgagtc gaatgcaatc atcacaaagt agtttctgag aatgcttcta      1740
     tctaggtttt atgtgaagat gtttcctttt ccaccacagg cctcaaagcc ctccaaatgt      1800
     ccacttgcag attctagaaa aagggagttt cagagctgct ctgtcaagag gaaagttcaa      1860
     ttcttgaagt ggaacacaaa caacacaaag gagtttctga gaatgcttct gtttagtttt      1920
     tctttgaaga tgaacacttt tccaaggaaa tcttcaaaga ggtccaaata tccacttgca      1980
     gattccaaag aaagagagtt tcaaactgct ccatcaacag gattgttcac ctctgtgcgt      2040
     tgaatgcagt cttcacagga aacattctga gaatgcttct gtctaggttt gatgtgagat      2100
     atacacgttt cgagaaggcc acaaagtggt ccaatatcca cttgc                      2145
//


spacer
spacer