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EBI Dbfetch

ID   ABBA01126756; SV 1; linear; genomic DNA; WGS; HUM; 1048 BP.
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AC   ABBA01126756;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276806797, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1048
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1048
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; fc13bda7dbd914c92fb7e49489d1350f.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270378.
DR   ENA-CON; GJ211910.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01126756.1:1-1048; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1048
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1048 BP; 315 A; 192 C; 215 G; 326 T; 0 other;
     aaaggaatat cttcccataa aaacgacata gaagctatct caggaacttg tttatgatgc        60
     atccaatcaa ctaacagtgt tgaacctttg tactgacaga gcagtttgaa acactctttt       120
     tttggaatct gcaagtggat atttgtatcg ctttgagaat ttcgttggaa acgggattac       180
     atataaaaag tagacagcag cattctcaga aacttcctta cgatgtttgc attcaagtca       240
     cagactggaa cattcccgtt catagagcag gttggaaaca ctctttttgt agcatctgga       300
     agtggacatt tggagcgcct tcttgcctgt ggtgaaaaag gaaatatctt cccataaaaa       360
     caagatagaa gcagtctcag aaacttattt gtgatgtgtg tcctcaacta acagacttga       420
     acctttcttt tcatgcagta cttctggaac actctttttt gaagattctg catgtggata       480
     tttggatagc tttcaggatt tcgttggaaa cgggtttaca tataaaaagt agacagcagg       540
     attctcagaa acttccttac gatgtttgcg ttcaagtcac agagtggaac attcccattc       600
     atagagcagg ttggaaacac tctttttgta gcatctggaa gtggacattt ctagcgcttt       660
     cttacctgtg gtgaaaaagg aaatatcttc ccataaaaac aagacagaag cattctcaga       720
     aacttttttg tgatgtgtgt cctcaactaa cggacttgaa cctttctttt catgcagtac       780
     ttctggaaca ctctttttga agattctgca tgtggatatt tggatggctt tgaggatttc       840
     gttgtaaacg ggattacata taaaaagtag acagcagcat tcagaaactt ctttgtggtg       900
     tctgcattca agtcacagaa ttgaacattc cctcacataa agcagttgtg aagcactcca       960
     tttgtagtat ctcgaagtgg atatttggcg ggctttgtag cctatctgga aaaagaaaat      1020
     atcttcccat gaatgcgaga tagaagca                                         1048
//


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